Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p24800 Brassica napus HOM05D000806 ORTHO05D002320 2.6e-49 198.4 97 100.0
BolC2t08571H Brassica oleracea HOM05D000806 ORTHO05D002320 4.9e-48 194.1 97 97.9
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 3.2e-15 85.1 44 81.8
BraSC25t45846Z Brassica rapa HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 3.2e-15 85.1 44 81.8
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 4.6e-14 81.3 44 79.5
BolSC29t60587H Brassica oleracea HOM05D000806 ORTHO05D002320 4.6e-14 81.3 44 79.5
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 4.6e-14 81.3 44 79.5
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 4.6e-14 81.3 44 79.5
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 4.6e-14 81.3 44 79.5
BolSC49t61185H Brassica oleracea HOM05D000806 ORTHO05D002320 4.6e-14 81.3 44 79.5
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 6.0e-14 80.9 44 75.0
BraSC25t45868Z Brassica rapa HOM05D000806 ORTHO05D002320 6.0e-14 80.9 45 77.8
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 3.0e-13 78.6 44 72.7
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 3.3e-12 75.1 38 81.6
BNapus_Darmor_BZH_scaffold_287p00130 Brassica napus HOM05D000806 ORTHO05D002320 3.3e-12 75.1 38 81.6
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 5.7e-12 74.3 40 75.0
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 1.2e-09 66.6 53 58.5
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 1.2e-09 66.6 45 62.2
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 2.6e-09 65.5 38 68.4
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.4e-09 65.1 60 53.3
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.4e-09 65.1 60 53.3
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.4e-09 65.1 60 53.3
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 5.9e-09 64.3 38 65.8
HanXRQChr10g0318221 Helianthus annuus HOM05D000806 ORTHO05D002320 7.6e-09 63.9 37 67.6
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.0e-08 63.5 37 70.3
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.0e-08 63.5 37 67.6
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.0e-08 63.5 34 73.5
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.3e-08 63.2 48 56.2
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.3e-08 63.2 37 70.3
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.3e-08 63.2 38 65.8
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.3e-08 63.2 38 65.8
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.3e-08 63.2 38 65.8
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.3e-08 63.2 38 65.8
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.7e-08 62.8 55 54.5
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.7e-08 62.8 55 54.5
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.7e-08 62.8 47 57.4
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 1.7e-08 62.8 31 87.1
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.7e-08 62.8 38 63.2
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 1.7e-08 62.8 35 68.6
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 1.7e-08 62.8 35 68.6
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 1.7e-08 62.8 50 54.0
Peaxi162Scf00937g00111 Petunia axillaris HOM05D000806 ORTHO05D002320 1.7e-08 62.8 37 67.6
Peaxi162Scf01064g00230 Petunia axillaris HOM05D000806 ORTHO05D002320 1.7e-08 62.8 37 67.6
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 2.2e-08 62.4 35 68.6
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 2.9e-08 62.0 38 63.2
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 3.8e-08 61.6 38 65.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.8e-08 61.6 40 62.5
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 3.8e-08 61.6 38 63.2
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 3.8e-08 61.6 38 63.2
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 3.8e-08 61.6 38 57.9
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 3.8e-08 61.6 55 54.5
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 3.8e-08 61.6 55 54.5
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 5.0e-08 61.2 38 63.2
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.5e-08 60.8 40 60.0
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 6.5e-08 60.8 37 67.6
Lsat_1_v5_gn_4_69500 Lactuca sativa HOM05D000806 ORTHO05D002320 1.1e-07 60.1 45 55.6
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 1.1e-07 60.1 54 53.7
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 1.4e-07 59.7 56 48.2
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 1.4e-07 59.7 56 48.2
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.9e-07 59.3 55 52.7
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.9e-07 59.3 55 52.7
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.9e-07 59.3 45 55.6
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 1.9e-07 59.3 54 50.0
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 2.5e-07 58.9 37 64.9
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 3.2e-07 58.5 39 61.5
Hund08575 Selenicereus undatus HOM05D000806 ORTHO05D002320 3.2e-07 58.5 39 56.4
Hund28450 Selenicereus undatus HOM05D000680 ORTHO05D002320 3.2e-07 58.5 39 56.4
Hund29174 Selenicereus undatus HOM05D000680 ORTHO05D002320 3.2e-07 58.5 39 56.4
Hund29492 Selenicereus undatus HOM05D000806 ORTHO05D002320 3.2e-07 58.5 39 56.4
Hund29619 Selenicereus undatus HOM05D000806 ORTHO05D002320 3.2e-07 58.5 39 56.4
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 3.2e-07 58.5 35 68.6
CAN.G1012.3 Capsicum annuum HOM05D000806 ORTHO05D002320 4.2e-07 58.2 37 62.2
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 9.3e-07 57.0 38 60.5
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-06 56.6 37 59.5
Lalb_Chr10g0102281 Lupinus albus HOM05D000806 ORTHO05D002320 1.6e-06 56.2 35 62.9
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 7.9e-06 53.9 49 49.0
Medtr3g080300 Medicago truncatula HOM05D000806 ORTHO05D002320 7.9e-06 53.9 34 67.6
Psat5g134840 Pisum sativum HOM05D000806 ORTHO05D002320 7.9e-06 53.9 37 62.2


User provided reference genes

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