Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p23760 Brassica napus HOM05D000212 ORTHO05D005509 3.8e-35 151.0 77 100.0
BolC2t08505H Brassica oleracea HOM05D000212 ORTHO05D005509 6.2e-30 133.7 86 83.7
BraA02t06533Z Brassica rapa HOM05D000212 ORTHO05D005509 1.2e-17 92.8 66 77.3
AL2G26910 Arabidopsis lyrata HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
BcaB03g15139 Brassica carinata HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
BcaB03g15394 Brassica carinata HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
BcaC08g46003 Brassica carinata HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
BcaNung05109 Brassica carinata HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
A07p34520 Brassica napus HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.6e-14 82.4 106 50.9
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
Carub.0002s1449 Capsella rubella HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
Sp5g23030 Schrenkiella parvula HOM05D000212 ORTHO05D005509 1.6e-14 82.4 106 50.9
CARHR060660 Cardamine hirsuta HOM05D000212 ORTHO05D005509 4.8e-14 80.9 106 50.0
Thhalv10018534m.g Eutrema salsugineum HOM05D000212 ORTHO05D005509 4.8e-14 80.9 106 50.0
BcaC08g46227 Brassica carinata HOM05D000212 ORTHO05D005509 6.3e-14 80.5 102 51.0
AT1G68010 Arabidopsis thaliana HOM05D000212 ORTHO05D005509 8.2e-14 80.1 106 50.0
MBI08_g39930_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D005509 2.4e-13 78.6 74 60.8
THA.LOC104807808 Tarenaya hassleriana HOM05D000212 ORTHO05D005509 2.4e-13 78.6 106 48.1
CiPaw.05G082600 Carya illinoinensis HOM05D000212 ORTHO05D005509 3.1e-13 78.2 106 47.2
Nn5g30798 Nelumbo nucifera HOM05D000212 ORTHO05D005509 3.1e-13 78.2 105 48.6
Nitab4.5_0000283g0400 Nicotiana tabacum HOM05D000212 ORTHO05D005509 3.1e-13 78.2 106 46.2
Nitab4.5_0003914g0050 Nicotiana tabacum HOM05D000212 ORTHO05D005509 3.1e-13 78.2 106 46.2
Oeu005702.1 Olea europaea HOM05D000212 ORTHO05D005509 3.1e-13 78.2 106 46.2
Cpa.g.sc20.87 Carica papaya HOM05D000212 ORTHO05D005509 5.3e-13 77.4 106 47.2
Haze_02134 Corylus avellana HOM05D000212 ORTHO05D005509 6.9e-13 77.0 106 46.2
Peaxi162Scf00362g00646 Petunia axillaris HOM05D000212 ORTHO05D005509 6.9e-13 77.0 106 45.3
Lj5C178T12 Lonicera japonica HOM05D000212 ORTHO05D005509 9.1e-13 76.6 106 45.3
Thecc.02G059100 Theobroma cacao HOM05D000212 ORTHO05D005509 9.1e-13 76.6 106 44.3
CAN.G588.84 Capsicum annuum HOM05D000212 ORTHO05D005509 1.2e-12 76.3 104 46.2
Cc09_g10170 Coffea canephora HOM05D000212 ORTHO05D005509 1.2e-12 76.3 106 46.2
Dinv14109 Davidia involucrata HOM05D000212 ORTHO05D005509 1.2e-12 76.3 106 45.3
GSVIVG01024012001 Vitis vinifera HOM05D000212 ORTHO05D005509 1.2e-12 76.3 106 46.2
Prupe.8G166000 Prunus persica HOM05D000212 ORTHO05D005509 1.5e-12 75.9 106 45.3
AUR62013028 Chenopodium quinoa HOM05D000212 ORTHO05D005509 2.0e-12 75.5 106 44.3
AUR62043666 Chenopodium quinoa HOM05D000212 ORTHO05D005509 2.0e-12 75.5 106 44.3
Solyc01g111630.3 Solanum lycopersicum HOM05D000212 ORTHO05D005509 2.0e-12 75.5 106 44.3
Sopen01g053670 Solanum pennellii HOM05D000212 ORTHO05D005509 2.0e-12 75.5 106 44.3
PGSC0003DMG400006186 Solanum tuberosum HOM05D000212 ORTHO05D005509 2.0e-12 75.5 106 44.3
unitig_899.g15611 Utricularia gibba HOM05D000212 ORTHO05D005509 2.6e-12 75.1 106 44.3
EL10Ac9g21375 Beta vulgaris HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 44.3
Cfa005249 Carpinus fangiana HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 45.3
FvH4_5g30340 Fragaria vesca HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 44.3
FAN08G0938 Fragaria x ananassa HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 44.3
FAN13G2675 Fragaria x ananassa HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 44.3
FAN18G0770 Fragaria x ananassa HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 44.3
MBI08_g29141_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D005509 3.4e-12 74.7 106 44.3
Aqoxy6G02140 Aquilegia oxysepala HOM05D000212 ORTHO05D005509 5.9e-12 73.9 106 43.4
Dinv41936 Davidia involucrata HOM05D000212 ORTHO05D005509 5.9e-12 73.9 106 44.3
Hma1.2p1_0163F.1_g072510 Hydrangea macrophylla HOM05D000212 ORTHO05D005509 5.9e-12 73.9 106 44.3
Hma1.2p1_0163F.1_g072520 Hydrangea macrophylla HOM05D000212 ORTHO05D005509 5.9e-12 73.9 106 44.3
CDE02G3685 Ceratophyllum demersum HOM05D000212 ORTHO05D005509 7.7e-12 73.6 106 43.4
Duzib132G0804 Durio zibethinus HOM05D000212 ORTHO05D005509 7.7e-12 73.6 106 42.5
Os02g0101500 Oryza sativa ssp. japonica HOM05D000212 ORTHO05D005509 7.7e-12 73.6 106 44.3
RcHm_v2.0_Chr7g0224761 Rosa chinensis HOM05D000212 ORTHO05D005509 7.7e-12 73.6 106 43.4
TAR381G1304 Trochodendron aralioides HOM05D000212 ORTHO05D005509 7.7e-12 73.6 106 43.4
Zm00001eb229250 Zea mays HOM05D000212 ORTHO05D005509 7.7e-12 73.6 106 44.3
CDE04G1730 Ceratophyllum demersum HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 42.5
Manes.04G076300 Manihot esculenta HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 43.4
Prupe.7G264000 Prunus persica HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 42.5
Sabra04G0117700 Salix brachista HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 43.4
SalBow7G0649 Salvia bowleyana HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 44.3
SalBow7G2155 Salvia bowleyana HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 44.3
TWI79G0672 Tripterygium wilfordii HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 43.4
VMungo0720G0733 Vigna mungo HOM05D000212 ORTHO05D005509 1.0e-11 73.2 106 44.3
Actinidia21457 Actinidia chinensis HOM05D000212 ORTHO05D005509 1.3e-11 72.8 106 44.3
Glyma.10G281400 Glycine max HOM05D000212 ORTHO05D005509 1.3e-11 72.8 106 44.3
Glyma.20G107800 Glycine max HOM05D000212 ORTHO05D005509 1.3e-11 72.8 106 44.3
Rhsim05G0056500 Rhododendron simsii HOM05D000212 ORTHO05D005509 1.3e-11 72.8 106 44.3
vmacro17343 Vaccinium macrocarpon HOM05D000212 ORTHO05D005509 1.3e-11 72.8 104 44.2
MSTRG.5454 Avicennia marina HOM05D000212 ORTHO05D005509 1.7e-11 72.4 106 44.3
Ciclev10028639m.g Citrus clementina HOM05D000212 ORTHO05D005509 1.7e-11 72.4 106 43.4
Lj5g0017900 Lotus japonicus HOM05D000212 ORTHO05D005509 1.7e-11 72.4 106 43.4
Lalb_Chr21g0306931 Lupinus albus HOM05D000212 ORTHO05D005509 1.7e-11 72.4 106 44.3
Psat6g231880 Pisum sativum HOM05D000212 ORTHO05D005509 1.7e-11 72.4 106 43.4
PGR142G1333 Punica granatum HOM05D000212 ORTHO05D005509 1.7e-11 72.4 106 44.3
CANSAT25G2634 Cannabis sativa HOM05D000212 ORTHO05D005509 2.2e-11 72.0 106 42.5
DCAR_022947 Daucus carota HOM05D000212 ORTHO05D005509 2.2e-11 72.0 106 42.5
MD05G1122100 Malus domestica HOM05D000212 ORTHO05D005509 2.2e-11 72.0 106 42.5
Potri.004G175800 Populus trichocarpa HOM05D000212 ORTHO05D005509 2.2e-11 72.0 106 42.5
Hund00191 Selenicereus undatus HOM05D000212 ORTHO05D005509 2.2e-11 72.0 106 42.5
Sc08g0002900 Simmondsia chinensis HOM05D000212 ORTHO05D005509 2.2e-11 72.0 106 43.4
CSS0004363 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D005509 2.9e-11 71.6 106 43.4
ECA246G1556 Erigeron canadensis HOM05D000212 ORTHO05D005509 2.9e-11 71.6 106 41.5
Gohir.A01G169100 Gossypium hirsutum HOM05D000212 ORTHO05D005509 2.9e-11 71.6 106 42.5
Gohir.D01G160100 Gossypium hirsutum HOM05D000212 ORTHO05D005509 2.9e-11 71.6 106 42.5
Gorai.002G198600 Gossypium raimondii HOM05D000212 ORTHO05D005509 2.9e-11 71.6 106 42.5
Phvul.007G019300 Phaseolus vulgaris HOM05D000212 ORTHO05D005509 2.9e-11 71.6 106 44.3
TPR.G36351 Trifolium pratense HOM05D000212 ORTHO05D005509 3.8e-11 71.2 106 42.5
Cpa.g.sc20.88 Carica papaya HOM05D000212 ORTHO05D005509 5.0e-11 70.9 67 58.2
ClCG02G004060 Citrullus lanatus HOM05D000212 ORTHO05D005509 5.0e-11 70.9 106 44.3
Medtr1g112510 Medicago truncatula HOM05D000212 ORTHO05D005509 5.0e-11 70.9 106 41.5
PSO541G1525 Papaver somniferum HOM05D000212 ORTHO05D005509 5.0e-11 70.9 106 41.5
PSO675G7560 Papaver somniferum HOM05D000212 ORTHO05D005509 5.0e-11 70.9 106 41.5
Lalb_Chr02g0143391 Lupinus albus HOM05D000212 ORTHO05D005509 6.5e-11 70.5 106 41.5
HPP92_022190 Vanilla planifolia HOM05D000212 ORTHO05D005509 6.5e-11 70.5 106 42.5
Eucgr.I01423 Eucalyptus grandis HOM05D000212 ORTHO05D005509 1.1e-10 69.7 106 41.5
arahy.Tifrunner.gnm1.ann1.71EHKP Arachis hypogaea HOM05D000212 ORTHO05D005509 1.4e-10 69.3 106 41.5
CiPaw.06G121600 Carya illinoinensis HOM05D000212 ORTHO05D005509 1.4e-10 69.3 97 46.4
CsaV3_7G001060 Cucumis sativus L. HOM05D000212 ORTHO05D005509 1.4e-10 69.3 106 42.5
HanXRQChr17g0544201 Helianthus annuus HOM05D000212 ORTHO05D005509 1.4e-10 69.3 106 41.5
Lsat_1_v5_gn_3_46860 Lactuca sativa HOM05D000212 ORTHO05D005509 1.4e-10 69.3 106 41.5
Sed0017644 Sechium edule HOM05D000212 ORTHO05D005509 1.4e-10 69.3 106 42.5
Ah.01g023040 Amaranthus hybridus HOM05D000212 ORTHO05D005509 1.9e-10 68.9 87 47.1
Ca_11207_v3 Cicer arietinum L. HOM05D000212 ORTHO05D005509 1.9e-10 68.9 106 42.5
Mapoly0015s0044 Marchantia polymorpha HOM05D000212 ORTHO05D005509 1.9e-10 68.9 105 41.0
CAN.G1305.30 Capsicum annuum HOM05D000212 ORTHO05D005509 2.5e-10 68.6 105 41.9
QL11p050728 Quercus lobata HOM05D000212 ORTHO05D005509 2.5e-10 68.6 106 41.5
Aa31LG11G2730 Aethionema arabicum HOM05D000212 ORTHO05D005509 3.2e-10 68.2 87 47.1
Pp3c19_20080 Physcomitrium patens HOM05D000212 ORTHO05D005509 3.2e-10 68.2 105 41.0
CAN.G1181.28 Capsicum annuum HOM05D000212 ORTHO05D005509 4.2e-10 67.8 104 41.3
CAN.G798.47 Capsicum annuum HOM05D000212 ORTHO05D005509 4.2e-10 67.8 99 46.5
THA.LOC104824763 Tarenaya hassleriana HOM05D000212 ORTHO05D005509 4.2e-10 67.8 106 42.5
Ah.01g008420 Amaranthus hybridus HOM05D000212 ORTHO05D005509 5.5e-10 67.4 85 48.2
Pp3c18_12500 Physcomitrium patens HOM05D000212 ORTHO05D005509 5.5e-10 67.4 105 40.0
SMO145G0129 Selaginella moellendorffii HOM05D000212 ORTHO05D005509 5.5e-10 67.4 106 40.6
Lalb_Chr06g0163651 Lupinus albus HOM05D000212 ORTHO05D005509 9.4e-10 66.6 106 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3207 Anthoceros agrestis HOM05D000212 ORTHO05D005509 2.7e-09 65.1 106 37.7
CAN.G426.19 Capsicum annuum HOM05D000212 ORTHO05D005509 3.6e-09 64.7 87 46.0
Migut.N01323 Erythranthe guttata HOM05D000212 ORTHO05D005509 3.6e-09 64.7 87 43.7
arahy.Tifrunner.gnm1.ann1.KVXN1E Arachis hypogaea HOM05D000212 ORTHO05D005509 4.6e-09 64.3 87 44.8
ATR0180G008 Amborella trichopoda HOM05D000212 ORTHO05D005509 6.1e-09 63.9 106 37.7
SalBow1G2308 Salvia bowleyana HOM05D000212 ORTHO05D005509 7.9e-09 63.5 100 41.0
CBR_g49204 Chara braunii HOM05D000212 ORTHO05D005509 1.0e-08 63.2 105 38.1
MBI15_g00259_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D005509 8.8e-08 60.1 80 46.2
CAN.G1040.7 Capsicum annuum HOM05D000212 ORTHO05D005509 3.3e-07 58.2 88 40.9
PRCOL_00005045 Prasinoderma coloniale HOM05D000212 ORTHO05D005509 4.8e-06 54.3 106 36.8


User provided reference genes

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