Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 8.9e-139 496.9 245 100.0
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.2e-138 496.5 244 100.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.6e-138 495.4 244 99.6
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 2.2e-137 492.3 244 99.2
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 6.4e-137 490.7 244 98.8
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 5.6e-125 451.1 244 90.6
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 8.1e-124 447.2 244 88.5
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 5.8e-122 441.0 244 87.7
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 9.9e-122 440.3 244 86.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 4.9e-121 438.0 244 86.9
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 8.4e-121 437.2 242 86.8
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 8.7e-118 427.2 261 80.1
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 6.9e-107 391.0 240 77.5
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 9.0e-107 390.6 244 75.4
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 1.9e-96 356.3 175 100.0
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.1e-93 347.1 240 68.3
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 4.3e-93 345.1 230 70.9
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 7.4e-93 344.4 231 70.1
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 8.2e-92 340.9 237 68.4
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 8.2e-92 340.9 236 68.2
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 2.4e-91 339.3 238 69.3
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 9.1e-91 337.4 237 68.4
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 5.9e-90 334.7 238 66.4
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 2.2e-89 332.8 238 68.1
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 8.5e-89 330.9 244 63.9
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 1.9e-88 329.7 238 67.6
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.5e-88 329.3 244 66.0
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.2e-88 328.9 238 66.4
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 9.4e-88 327.4 232 66.8
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 2.1e-87 326.2 237 64.1
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 2.1e-87 326.2 235 66.8
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 2.1e-87 326.2 245 65.3
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.7e-87 325.9 245 62.9
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 4.6e-87 325.1 242 62.8
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.6e-87 325.1 235 66.0
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 6.1e-87 324.7 238 62.6
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 7.9e-87 324.3 238 66.0
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.0e-86 323.9 235 66.8
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.4e-86 323.6 238 63.4
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 3.9e-86 322.0 240 61.2
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 3.9e-86 322.0 245 64.1
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.9e-86 322.0 235 66.8
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 5.1e-86 321.6 241 65.6
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 8.8e-86 320.9 241 64.7
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 8.8e-86 320.9 240 66.7
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 8.8e-86 320.9 238 64.7
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.1e-85 320.5 235 66.8
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 2.0e-85 319.7 245 63.7
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 4.4e-85 318.5 231 67.5
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 4.4e-85 318.5 241 65.1
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 5.7e-85 318.2 235 66.8
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 9.7e-85 317.4 236 64.8
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 9.7e-85 317.4 235 66.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.3e-84 317.0 231 64.9
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.7e-84 316.6 235 65.1
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.7e-84 316.6 238 63.0
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 6.3e-84 314.7 230 66.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 6.3e-84 314.7 217 70.0
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.2e-84 314.3 231 64.1
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.1e-83 313.9 239 63.6
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 1.1e-83 313.9 246 64.2
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.4e-83 313.5 231 64.1
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.8e-83 313.2 238 64.7
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 3.1e-83 312.4 244 62.7
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 3.1e-83 312.4 231 64.1
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 4.1e-83 312.0 243 64.6
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 5.3e-83 311.6 238 63.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 6.9e-83 311.2 235 62.6
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 6.9e-83 311.2 239 64.0
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 6.9e-83 311.2 234 64.1
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.1e-83 310.8 244 62.3
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 9.1e-83 310.8 241 61.0
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.5e-82 310.1 240 63.3
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 2.0e-82 309.7 235 65.1
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.0e-82 309.7 231 63.2
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 2.6e-82 309.3 250 62.4
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 4.5e-82 308.5 234 64.1
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 4.5e-82 308.5 231 64.1
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 5.9e-82 308.1 234 64.1
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 5.9e-82 308.1 235 59.1
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 2.9e-81 305.8 250 61.2
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 1.4e-80 303.5 244 61.9
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.9e-80 303.1 235 61.7
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 2.5e-80 302.8 242 62.0
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 3.2e-80 302.4 237 62.0
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.6e-79 300.1 268 55.2
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.7e-79 299.3 251 58.6
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 5.7e-77 291.6 191 72.8
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 3.7e-76 288.9 235 61.3
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.0e-75 284.6 282 52.5
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.6e-74 282.7 182 76.4
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 3.8e-73 278.9 193 68.9
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.8e-73 278.9 212 60.4
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 3.2e-72 275.8 217 61.3
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 8.0e-71 271.2 193 66.8
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.5e-69 266.9 192 67.7
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.8e-68 262.7 216 57.9
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 4.8e-68 261.9 195 65.6
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.4e-67 259.6 300 46.7
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 4.1e-67 258.8 189 62.4
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.0e-66 256.5 209 57.4
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 5.0e-65 251.9 210 55.7
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.6e-61 239.6 226 54.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 2.0e-58 229.9 193 62.2
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.7e-57 226.9 150 70.7
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 2.6e-53 213.0 208 55.8
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 3.4e-53 212.6 142 71.1
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 1.2e-50 204.1 223 48.9
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 3.8e-49 199.1 245 44.5
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 4.7e-47 192.2 121 75.2
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 3.0e-46 189.5 114 79.8
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.4e-43 179.9 121 70.2
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 6.6e-33 145.2 110 64.5
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 4.9e-28 129.0 96 61.5
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.8e-22 110.5 124 51.6
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.4e-14 83.6 50 74.0
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 4.0e-14 82.8 62 62.9
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.5e-13 80.9 189 32.3
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 1.5e-13 80.9 123 39.8
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 1.7e-12 77.4 53 75.5
Psat0s3488g0040 Pisum sativum HOM05D002270 ORTHO05D030496 2.9e-12 76.6 53 75.5
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 4.9e-12 75.9 100 44.0
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 6.4e-12 75.5 98 43.9
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 6.4e-12 75.5 191 30.9
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 8.4e-12 75.1 100 45.0
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 4.2e-11 72.8 112 41.1
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.5e-10 69.7 130 32.3
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 1.0e-09 68.2 107 39.3
SEGI_12162 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.0e-09 66.6 163 29.4
arahy.Tifrunner.gnm1.ann1.X0CJR3 Arachis hypogaea HOM05D000682 ORTHO05D000510 3.9e-09 66.2 41 78.0
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 2.5e-08 63.5 164 29.9
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 7.3e-08 62.0 130 33.8
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 7.3e-08 62.0 103 35.0
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 2.1e-07 60.5 111 36.0
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.8e-07 60.1 109 35.8


User provided reference genes

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