Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p19790 Brassica napus HOM05D008309 ORTHO05D010308 1.4e-164 582.8 278 100.0
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 3.6e-136 488.4 255 93.3
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 2.7e-131 472.2 286 83.2
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 1.3e-130 469.9 286 82.9
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 8.6e-130 467.2 283 83.4
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 6.9e-103 377.9 236 81.4
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 3.4e-102 375.6 286 65.7
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 4.9e-101 371.7 286 64.7
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 5.1e-98 361.7 286 64.7
C03p39230 Brassica napus HOM05D008309 ORTHO05D010308 3.3e-97 359.0 275 65.1
C05p49520 Brassica napus HOM05D008309 ORTHO05D010308 6.4e-93 344.7 255 72.2
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 1.1e-92 344.0 255 67.5
A09p53580 Brassica napus HOM05D008309 ORTHO05D010308 3.2e-92 342.4 255 65.1
BolC7t46146H Brassica oleracea HOM05D008309 ORTHO05D010308 1.3e-90 337.0 275 62.5
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 6.7e-90 334.7 286 59.4
C07p56660 Brassica napus HOM05D008309 ORTHO05D010308 4.8e-88 328.6 275 61.8
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 3.9e-82 308.9 245 64.1
C01p25750 Brassica napus HOM05D008309 ORTHO05D010308 3.1e-79 299.3 275 57.8
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 9.7e-73 277.7 230 63.9
BolC1t02525H Brassica oleracea HOM05D008309 ORTHO05D010308 3.4e-70 269.2 234 60.3
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 1.9e-68 263.5 230 62.2
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 1.2e-62 244.2 286 49.0
BraA04t17824Z Brassica rapa HOM05D008309 ORTHO05D010308 2.6e-62 243.0 219 59.8
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 4.5e-62 242.3 286 47.9
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 7.4e-57 224.9 228 54.8
A09p31570 Brassica napus HOM05D008309 ORTHO05D010308 8.8e-50 201.4 115 79.1
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 1.9e-44 183.7 264 42.4
BolC4t25321H Brassica oleracea HOM05D008309 ORTHO05D010308 4.8e-40 169.1 100 76.0
C04p37540 Brassica napus HOM05D000855 ORTHO05D002321 8.3e-40 168.3 128 64.8
BraSC39t46182Z Brassica rapa HOM05D008309 ORTHO05D010308 2.0e-38 163.7 115 67.0
A09p43070 Brassica napus HOM05D008309 ORTHO05D010308 1.3e-37 161.0 123 61.8
BcaC06g31080 Brassica carinata HOM05D008309 ORTHO05D010308 1.5e-36 157.5 194 50.5
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 3.0e-34 149.8 239 36.8
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 6.3e-32 142.1 156 51.3
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 2.7e-30 136.7 187 46.0
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 2.7e-30 136.7 187 46.0
BcaC06g32085 Brassica carinata HOM05D008309 ORTHO05D010308 3.8e-29 132.9 71 85.9
BraA01t02998Z Brassica rapa HOM05D008309 ORTHO05D010308 5.0e-29 132.5 249 37.8
A01p29020 Brassica napus HOM05D008309 ORTHO05D010308 7.2e-28 128.6 249 37.8
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 3.0e-26 123.2 163 49.1
BraA01t02865Z Brassica rapa HOM05D008309 ORTHO05D010308 6.3e-24 115.5 78 65.4
BraA05t22683Z Brassica rapa HOM05D008309 ORTHO05D000062 6.3e-24 115.5 78 65.4
C01p31730 Brassica napus HOM05D001350 ORTHO05D001091 1.1e-23 114.8 93 55.9
BolC1t03108H Brassica oleracea HOM05D001350 ORTHO05D001091 5.4e-23 112.5 92 55.4
A05p38920 Brassica napus HOM05D008309 ORTHO05D010308 2.0e-22 110.5 107 56.1
C03p71000 Brassica napus HOM05D008309 ORTHO05D010308 8.6e-21 105.1 63 74.6
BolC3t19382H Brassica oleracea HOM05D008309 ORTHO05D010308 1.2e-19 101.3 58 75.9
C01p31680 Brassica napus HOM05D008309 ORTHO05D000062 2.8e-19 100.1 77 57.1
BolC8t48093H Brassica oleracea HOM05D008309 ORTHO05D010308 3.6e-19 99.8 131 48.9
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 6.1e-19 99.0 80 52.5
Lj1g0024925 Lotus japonicus HOM05D002954 ORTHO05D003353 4.9e-16 89.4 161 33.5
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.1e-15 88.2 163 33.7
AL1G48750 Arabidopsis lyrata HOM05D039413 ORTHO05D010308 7.8e-14 82.0 167 31.1
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 7.8e-14 82.0 168 28.0
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 7.8e-14 82.0 168 28.0
VMungo0720G1591 Vigna mungo HOM05D002954 ORTHO05D000385 7.8e-14 82.0 167 29.3
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.0e-13 81.6 154 32.5
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 1.0e-13 81.6 160 29.4
Nitab4.5_0002394g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.0e-13 80.1 137 33.6
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 5.0e-13 79.3 193 29.5
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 8.6e-13 78.6 162 31.5
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 4.3e-12 76.3 202 27.7
Peaxi162Scf00109g00210 Petunia axillaris HOM05D002954 ORTHO05D003353 5.6e-12 75.9 169 29.6
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 7.3e-12 75.5 122 40.2
Cpa.g.c35072.1 Carica papaya HOM05D001309 ORTHO05D000385 7.3e-12 75.5 137 32.1
Lj2g0015436 Lotus japonicus HOM05D002954 ORTHO05D010308 2.8e-11 73.6 153 28.1
Nitab4.5_0004891g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.6e-11 73.2 153 30.1
Phvul.L002237 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 3.6e-11 73.2 174 30.5
AUR62041672 Chenopodium quinoa HOM05D001309 ORTHO05D000385 6.2e-11 72.4 145 31.0
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 8.0e-11 72.0 154 29.9
arahy.Tifrunner.gnm1.ann1.LZRM5J Arachis hypogaea HOM05D011000 ORTHO05D000385 1.8e-10 70.9 161 28.6
Gohir.D10G156350 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.8e-10 70.9 166 29.5
arahy.Tifrunner.gnm1.ann1.2IZ9JW Arachis hypogaea HOM05D002954 ORTHO05D003353 4.0e-10 69.7 181 29.3
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 4.0e-10 69.7 199 29.1
TPR.G34719 Trifolium pratense HOM05D002954 ORTHO05D000385 4.0e-10 69.7 181 29.3
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 6.8e-10 68.9 173 28.9
Os04g0610000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 6.8e-10 68.9 168 26.8
Phvul.001G118100 Phaseolus vulgaris HOM05D002954 ORTHO05D000385 6.8e-10 68.9 139 26.6
Gohir.D04G003250 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.2e-09 68.2 149 32.2
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 1.5e-09 67.8 181 29.3
Zm00001eb267220 Zea mays HOM05D008576 ORTHO05D000385 1.5e-09 67.8 174 29.3
Carub.0001s3238 Capsella rubella HOM05D039413 ORTHO05D010308 2.0e-09 67.4 107 37.4
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 2.0e-09 67.4 138 31.9
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.0e-09 67.4 129 34.1
Peaxi162Scf00006g00207 Petunia axillaris HOM05D002954 ORTHO05D003353 2.0e-09 67.4 238 25.6
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 2.0e-09 67.4 150 29.3
arahy.Tifrunner.gnm1.ann1.E8HHXW Arachis hypogaea HOM05D002954 ORTHO05D010308 3.4e-09 66.6 152 25.7
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 3.4e-09 66.6 126 31.7
Phvul.008G149000 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 4.4e-09 66.2 185 29.7
arahy.Tifrunner.gnm1.ann1.Y6RTQD Arachis hypogaea HOM05D002954 ORTHO05D010308 5.8e-09 65.9 152 25.7
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.8e-09 65.9 126 30.2
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 7.5e-09 65.5 70 48.6
Peaxi162Scf02065g00005 Petunia axillaris HOM05D002954 ORTHO05D010308 7.5e-09 65.5 82 35.4
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 9.8e-09 65.1 136 28.7
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-08 64.7 125 32.0
Carub.0033s0009 Capsella rubella HOM05D039413 ORTHO05D010308 1.3e-08 64.7 107 36.4
Peaxi162Scf01071g00046 Petunia axillaris HOM05D040622 ORTHO05D010308 1.7e-08 64.3 89 32.6
Lj6g0018783 Lotus japonicus HOM05D002954 ORTHO05D000385 2.2e-08 63.9 155 28.4
Zm00001eb380870 Zea mays HOM05D008576 ORTHO05D000385 2.2e-08 63.9 174 28.7
Peaxi162Scf00485g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 2.9e-08 63.5 158 31.0
TWI31G0781 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.9e-08 62.8 132 29.5
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.9e-08 62.8 143 28.0
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 6.4e-08 62.4 105 32.4
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 6.4e-08 62.4 65 53.8
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 8.3e-08 62.0 123 39.0
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.3e-08 62.0 133 28.6
Nn7g37626 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.4e-07 61.2 147 32.0
Ah.06g194520 Amaranthus hybridus HOM05D000711 ORTHO05D000545 2.4e-07 60.5 130 30.0
Nitab4.5_0000074g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.2e-07 60.1 155 29.7
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 3.2e-07 60.1 109 33.0
Hund07415 Selenicereus undatus HOM05D004066 ORTHO05D004434 3.2e-07 60.1 207 25.6
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 3.2e-07 60.1 153 26.8
EL10Ac3g06257 Beta vulgaris HOM05D008455 ORTHO05D009597 4.1e-07 59.7 170 26.5
COL.COLO4_15543 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.1e-07 59.7 146 26.0
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 5.4e-07 59.3 118 32.2
Solyc04g150154.1 Solanum lycopersicum HOM05D001309 ORTHO05D000385 7.1e-07 58.9 129 27.1
EL10Ac4g08902 Beta vulgaris HOM05D008455 ORTHO05D009597 1.2e-06 58.2 142 27.5
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 1.2e-06 58.2 142 27.5
EL10Ac9g22691 Beta vulgaris HOM05D008455 ORTHO05D009597 1.6e-06 57.8 142 27.5
AUR62040089 Chenopodium quinoa HOM05D001309 ORTHO05D000385 1.6e-06 57.8 101 31.7
EL10Ac2g03097 Beta vulgaris HOM05D008455 ORTHO05D009597 2.1e-06 57.4 142 27.5
EL10Ac2g03454 Beta vulgaris HOM05D008455 ORTHO05D009597 2.1e-06 57.4 142 27.5
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 2.1e-06 57.4 149 25.5
EL10Ac2g03816 Beta vulgaris HOM05D008455 ORTHO05D009597 2.7e-06 57.0 142 27.5
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 2.7e-06 57.0 139 27.3
FvH4_3g14251 Fragaria vesca HOM05D000539 ORTHO05D000233 2.7e-06 57.0 144 29.9
AUR62041429 Chenopodium quinoa HOM05D000107 ORTHO05D000062 3.5e-06 56.6 137 24.8
Nitab4.5_0007229g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.5e-06 56.6 86 34.9
Os07g0212400 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 3.5e-06 56.6 158 28.5
arahy.Tifrunner.gnm1.ann1.I134XL Arachis hypogaea HOM05D011000 ORTHO05D003353 4.6e-06 56.2 133 27.8
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 6.0e-06 55.8 70 47.1
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 6.0e-06 55.8 70 47.1
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 6.0e-06 55.8 87 32.2
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 6.0e-06 55.8 122 28.7
Nitab4.5_0000067g0100 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.0e-06 55.8 121 30.6
Os08g0367300 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 6.0e-06 55.8 158 27.8
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.0e-06 55.8 174 27.6
EL10Ac3g06529 Beta vulgaris HOM05D008455 ORTHO05D009597 7.8e-06 55.5 139 27.3
FvH4_1g28483 Fragaria vesca HOM05D000539 ORTHO05D000233 7.8e-06 55.5 143 27.3
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 7.8e-06 55.5 120 26.7
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 7.8e-06 55.5 120 26.7
Os02g0129000 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 7.8e-06 55.5 158 27.8
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 7.8e-06 55.5 183 25.7


User provided reference genes

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