Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 5.4e-32 140.6 82 100.0
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.4e-24 115.9 74 93.2
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-24 114.4 74 91.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.1e-23 112.1 62 96.8
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-23 112.1 62 96.8
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 2.1e-23 112.1 62 96.8
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.1e-23 112.1 76 85.5
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 2.7e-23 111.7 74 90.5
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.7e-23 111.7 74 89.2
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.6e-23 110.9 62 95.2
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 6.0e-23 110.5 62 93.5
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 7.9e-23 110.2 74 87.8
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 7.9e-23 110.2 74 87.8
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 3.0e-22 108.2 61 93.4
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 3.0e-22 108.2 61 93.4
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 3.0e-22 108.2 61 93.4
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 3.0e-22 108.2 61 93.4
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 5.1e-22 107.5 59 96.6
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 8.7e-22 106.7 60 93.3
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 8.7e-22 106.7 60 93.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 8.7e-22 106.7 60 93.3
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.7e-22 106.7 75 76.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.5e-21 105.9 61 88.5
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 1.9e-21 105.5 61 88.5
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.9e-21 105.5 60 88.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-21 104.8 59 93.2
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 4.3e-21 104.4 61 88.5
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.3e-21 104.4 61 86.9
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 4.3e-21 104.4 70 74.3
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 4.3e-21 104.4 61 86.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 4.3e-21 104.4 71 74.6
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 7.4e-21 103.6 61 88.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 9.6e-21 103.2 61 82.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.3e-20 102.8 60 88.3
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.6e-20 102.4 73 72.6
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.6e-20 102.4 60 86.7
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-20 102.4 60 86.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-20 102.4 60 86.7
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-20 102.4 61 85.2
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.6e-20 102.4 61 83.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.6e-20 102.4 61 83.6
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.6e-20 102.4 61 86.9
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 2.1e-20 102.1 65 73.8
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.1e-20 102.1 73 74.0
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-20 102.1 73 78.1
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.8e-20 101.7 60 83.3
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.8e-20 101.7 79 72.2
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.8e-20 101.7 61 82.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.8e-20 101.7 61 82.0
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.7e-20 101.3 61 83.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.8e-20 100.9 61 82.0
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 4.8e-20 100.9 61 85.2
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 6.2e-20 100.5 61 82.0
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 6.2e-20 100.5 61 80.3
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 8.1e-20 100.1 61 82.0
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.1e-19 99.8 61 78.7
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.1e-19 99.8 61 78.7
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.4e-19 99.4 60 80.0
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.4e-19 99.4 61 83.6
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.4e-19 99.4 76 75.0
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.8e-19 99.0 60 80.0
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.8e-19 99.0 61 77.0
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.8e-19 99.0 58 86.2
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.4e-19 98.6 60 80.0
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 2.4e-19 98.6 60 85.0
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.4e-19 98.6 60 81.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 3.1e-19 98.2 60 81.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 3.1e-19 98.2 64 75.0
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 4.0e-19 97.8 59 81.4
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 5.3e-19 97.4 61 80.3
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 9.0e-19 96.7 60 75.0
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.0e-18 95.5 70 74.3
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.6e-18 95.1 60 80.0
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 2.6e-18 95.1 60 76.7
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.6e-18 95.1 61 77.0
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 4.5e-18 94.4 60 73.3
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 5.8e-18 94.0 72 65.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.3e-17 92.8 65 67.7
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.2e-17 92.0 60 75.0
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 2.2e-17 92.0 67 71.6
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.9e-17 91.7 60 75.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 4.9e-17 90.9 60 76.7
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.9e-16 89.0 73 69.9
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.1e-15 85.5 61 65.6
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.6e-15 84.3 60 68.3
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 7.9e-15 83.6 60 68.3
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.0e-14 83.2 60 66.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.0e-14 83.2 60 66.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 3.9e-14 81.3 60 70.0
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.9e-13 79.0 54 75.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.1e-12 75.5 47 76.6
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.7e-12 74.7 64 65.6
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 3.7e-12 74.7 64 65.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.2e-12 73.9 74 55.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.2e-12 73.9 60 66.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.1e-11 73.2 71 53.5
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.4e-11 72.8 72 51.4
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.4e-11 72.8 78 52.6
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.4e-11 72.8 71 57.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.8e-11 72.4 72 55.6
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.8e-11 72.4 61 65.6
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.1e-11 71.6 71 52.1
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 4.0e-11 71.2 71 54.9
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 4.0e-11 71.2 71 54.9
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.0e-11 71.2 61 67.2
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 6.9e-11 70.5 59 64.4
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 9.0e-11 70.1 72 51.4
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.2e-10 69.7 71 50.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 3.4e-10 68.2 73 47.9
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 3.4e-10 68.2 73 47.9
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.4e-10 68.2 73 50.7
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.4e-10 68.2 71 50.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 4.5e-10 67.8 61 59.0
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 5.8e-10 67.4 61 55.7
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 7.6e-10 67.0 71 56.3
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 7.6e-10 67.0 64 53.1
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.6e-10 67.0 71 49.3
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 7.6e-10 67.0 45 68.9
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 7.6e-10 67.0 73 52.1
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.0e-09 66.6 61 54.1
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.0e-09 66.6 73 49.3
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.0e-09 66.6 61 55.7
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.3e-09 66.2 61 52.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.3e-09 66.2 61 54.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.3e-09 66.2 71 52.1
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.3e-09 66.2 61 54.1
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.3e-09 66.2 71 52.1
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.7e-09 65.9 61 54.1
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.7e-09 65.9 61 54.1
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.7e-09 65.9 64 51.6
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.9e-09 65.1 61 52.5
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.9e-09 65.1 62 58.1
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.9e-09 65.1 71 52.1
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.9e-09 65.1 73 50.7
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.9e-09 65.1 73 52.1
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 3.8e-09 64.7 61 52.5
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.0e-09 64.3 61 52.5
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 5.0e-09 64.3 75 52.0
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 5.0e-09 64.3 61 54.1
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 6.5e-09 63.9 70 45.7
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 8.4e-09 63.5 73 47.9
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.1e-08 63.2 67 52.2
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.9e-08 62.4 81 38.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.9e-08 62.4 60 56.7
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 3.2e-08 61.6 39 71.8
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 3.2e-08 61.6 61 47.5
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 4.2e-08 61.2 37 81.1
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 5.5e-08 60.8 65 53.8
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 5.5e-08 60.8 50 60.0
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 7.1e-08 60.5 58 56.9
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 7.1e-08 60.5 58 56.9
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.2e-07 59.7 72 50.0


User provided reference genes

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