Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p17510 Brassica napus HOM05D002278 ORTHO05D005241 1.6e-200 702.6 359 100.0
BcaC03g15051 Brassica carinata HOM05D002278 ORTHO05D005241 1.2e-192 676.4 350 98.3
BolC2t08672H Brassica oleracea HOM05D002278 ORTHO05D005241 1.2e-192 676.4 350 98.3
C02p25950 Brassica napus HOM05D002278 ORTHO05D005241 2.5e-190 668.7 350 97.7
BcaB03g15998 Brassica carinata HOM05D002278 ORTHO05D005241 4.1e-185 651.4 352 95.5
BcaC08g47399 Brassica carinata HOM05D002278 ORTHO05D005241 3.4e-179 631.7 352 93.5
C06p52170 Brassica napus HOM05D002278 ORTHO05D005241 4.9e-178 627.9 337 96.4
A07p43530 Brassica napus HOM05D002278 ORTHO05D005241 6.0e-176 620.9 342 94.7
BolC6t40240H Brassica oleracea HOM05D002278 ORTHO05D005241 1.1e-169 600.1 336 93.5
BraA07t31865Z Brassica rapa HOM05D002278 ORTHO05D005241 1.5e-166 589.7 341 91.5
Sp5g33370 Schrenkiella parvula HOM05D002278 ORTHO05D005241 5.5e-137 491.5 382 73.8
SpUn0091_0020 Schrenkiella parvula HOM05D002278 ORTHO05D005241 5.5e-137 491.5 382 73.8
Thhalv10018319m.g Eutrema salsugineum HOM05D002278 ORTHO05D005241 2.6e-126 456.1 377 70.3
AL2G38580 Arabidopsis lyrata HOM05D002278 ORTHO05D005241 4.4e-110 402.1 378 65.1
AT1G78230 Arabidopsis thaliana HOM05D002278 ORTHO05D005241 6.3e-109 398.3 375 65.1
Carub.0002s2514 Capsella rubella HOM05D002278 ORTHO05D005241 4.2e-105 385.6 373 63.5
CARHR071690 Cardamine hirsuta HOM05D002278 ORTHO05D005241 8.0e-96 354.8 365 59.7
Aa31LG4G8250 Aethionema arabicum HOM05D002278 ORTHO05D005241 6.2e-88 328.6 400 53.2
THA.LOC104810738 Tarenaya hassleriana HOM05D002278 ORTHO05D005241 2.8e-72 276.6 414 49.0
GSVIVG01009041001 Vitis vinifera HOM05D002278 ORTHO05D005241 9.6e-57 224.9 399 40.4
Atru.chr13.1173 Acer truncatum HOM05D002278 ORTHO05D005241 3.5e-51 206.5 468 38.2
Gohir.D05G228300 Gossypium hirsutum HOM05D002278 ORTHO05D005241 7.9e-51 205.3 441 39.0
Gorai.009G236200 Gossypium raimondii HOM05D002278 ORTHO05D005241 7.9e-51 205.3 441 39.0
Manes.18G066400 Manihot esculenta HOM05D002278 ORTHO05D005241 5.1e-50 202.6 431 36.7
QL12p037001 Quercus lobata HOM05D002278 ORTHO05D005241 6.7e-50 202.2 459 36.4
Gohir.A05G225600 Gossypium hirsutum HOM05D002278 ORTHO05D005241 3.3e-49 199.9 442 39.6
CiPaw.08G045900 Carya illinoinensis HOM05D002278 ORTHO05D005241 4.3e-49 199.5 467 35.8
Ciclev10000471m.g Citrus clementina HOM05D002278 ORTHO05D005241 9.6e-49 198.4 465 37.2
COL.COLO4_12056 Corchorus olitorius HOM05D002278 ORTHO05D005241 2.8e-48 196.8 462 35.9
Ah.05g169880 Amaranthus hybridus HOM05D002278 ORTHO05D005241 3.7e-48 196.4 450 35.6
ClCG11G014130 Citrullus lanatus HOM05D002278 ORTHO05D005241 4.8e-48 196.1 452 36.5
Sabra02G0076800 Salix brachista HOM05D002278 ORTHO05D005241 6.2e-48 195.7 460 37.8
Duzib093G1829 Durio zibethinus HOM05D002278 ORTHO05D005241 8.1e-48 195.3 464 36.9
Potri.005G164000 Populus trichocarpa HOM05D002278 ORTHO05D005241 1.4e-47 194.5 456 35.7
Thecc.08G105400 Theobroma cacao HOM05D002278 ORTHO05D005241 1.4e-47 194.5 465 35.7
Dinv44784 Davidia involucrata HOM05D002278 ORTHO05D005241 3.1e-47 193.4 422 38.4
Dinv14339 Davidia involucrata HOM05D002278 ORTHO05D005241 9.0e-47 191.8 465 37.0
Sed0026585 Sechium edule HOM05D002278 ORTHO05D005241 2.6e-46 190.3 451 35.9
EL10Ac1g01206 Beta vulgaris HOM05D002278 ORTHO05D005241 4.5e-46 189.5 457 34.8
Medtr3g074720 Medicago truncatula HOM05D002278 ORTHO05D005241 1.0e-45 188.3 384 37.0
arahy.Tifrunner.gnm1.ann1.D6EEK4 Arachis hypogaea HOM05D002278 ORTHO05D005241 1.7e-45 187.6 376 38.0
Glyma.04G101000 Glycine max HOM05D002278 ORTHO05D005241 1.7e-45 187.6 383 36.6
Hma1.2p1_0575F.1_g181670 Hydrangea macrophylla HOM05D002278 ORTHO05D005241 1.7e-45 187.6 445 36.4
TWI36G1031 Tripterygium wilfordii HOM05D002278 ORTHO05D005241 1.7e-45 187.6 451 37.7
Haze_22283 Corylus avellana HOM05D002278 ORTHO05D005241 2.2e-45 187.2 466 34.8
vmacro21263 Vaccinium macrocarpon HOM05D002278 ORTHO05D005241 2.9e-45 186.8 434 36.9
Actinidia30781 Actinidia chinensis HOM05D002278 ORTHO05D005241 3.8e-45 186.4 464 36.6
Ca_15253_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 4.9e-45 186.0 372 38.2
Ca_30277_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 4.9e-45 186.0 372 38.2
PGR031G0688 Punica granatum HOM05D002278 ORTHO05D005241 6.5e-45 185.7 452 36.3
AUR62018929 Chenopodium quinoa HOM05D002278 ORTHO05D005241 8.4e-45 185.3 433 35.1
TPR.G26157 Trifolium pratense HOM05D002278 ORTHO05D005241 1.1e-44 184.9 382 36.6
CANSAT25G1612 Cannabis sativa HOM05D002278 ORTHO05D005241 1.4e-44 184.5 442 37.3
arahy.Tifrunner.gnm1.ann1.LTHX1H Arachis hypogaea HOM05D002278 ORTHO05D005241 1.9e-44 184.1 451 35.3
Phvul.009G031700 Phaseolus vulgaris HOM05D002278 ORTHO05D005241 2.5e-44 183.7 382 35.3
Psat5g139720 Pisum sativum HOM05D002278 ORTHO05D005241 2.5e-44 183.7 385 36.9
AUR62027773 Chenopodium quinoa HOM05D002278 ORTHO05D005241 3.2e-44 183.3 429 36.1
Hund16899 Selenicereus undatus HOM05D002278 ORTHO05D005241 3.2e-44 183.3 469 34.1
Potri.002G097800 Populus trichocarpa HOM05D002278 ORTHO05D005241 4.2e-44 183.0 458 36.9
CsaV3_3G047530 Cucumis sativus L. HOM05D002278 ORTHO05D005241 5.5e-44 182.6 450 35.8
TAR625G0861 Trochodendron aralioides HOM05D002278 ORTHO05D005241 5.5e-44 182.6 448 36.6
MELO3C003571.2 Cucumis melo HOM05D002278 ORTHO05D005241 7.1e-44 182.2 451 35.3
Glyma.06G102700 Glycine max HOM05D002278 ORTHO05D005241 7.1e-44 182.2 385 37.4
Sc23g0000250 Simmondsia chinensis HOM05D002278 ORTHO05D005241 1.2e-43 181.4 467 34.9
TWI12G0495 Tripterygium wilfordii HOM05D002278 ORTHO05D005241 1.6e-43 181.0 458 36.0
Rhsim06G0081100 Rhododendron simsii HOM05D002278 ORTHO05D005241 2.7e-43 180.3 441 34.9
Cfa013646 Carpinus fangiana HOM05D002278 ORTHO05D005241 7.9e-43 178.7 465 33.8
CiPaw.07G178800 Carya illinoinensis HOM05D002278 ORTHO05D005241 7.9e-43 178.7 459 34.4
Medtr5g064040 Medicago truncatula HOM05D002278 ORTHO05D005241 7.9e-43 178.7 330 40.3
VMungo1309G1178 Vigna mungo HOM05D002278 ORTHO05D005241 7.9e-43 178.7 407 34.4
Phvul.008G173900 Phaseolus vulgaris HOM05D002278 ORTHO05D005241 3.9e-42 176.4 363 36.6
Lj4A101G75 Lonicera japonica HOM05D002278 ORTHO05D005241 5.1e-42 176.0 439 36.0
MD08G1184400 Malus domestica HOM05D002278 ORTHO05D005241 5.1e-42 176.0 462 34.4
PSO210G4340 Papaver somniferum HOM05D002278 ORTHO05D005241 5.1e-42 176.0 381 35.4
Solyc04g074270.3 Solanum lycopersicum HOM05D002278 ORTHO05D005241 6.7e-42 175.6 311 39.9
Sopen04g029400 Solanum pennellii HOM05D002278 ORTHO05D005241 6.7e-42 175.6 302 41.1
CSS0019585 Camellia sinensis var. sinensis HOM05D002278 ORTHO05D005241 2.5e-41 173.7 462 34.4
CSS0021059 Camellia sinensis var. sinensis HOM05D002278 ORTHO05D005241 2.5e-41 173.7 462 34.4
Cpa.g.sc36.143 Carica papaya HOM05D002278 ORTHO05D005241 2.5e-41 173.7 446 35.0
Glyma.14G174400 Glycine max HOM05D002278 ORTHO05D005241 2.5e-41 173.7 362 36.7
TAR628G0430 Trochodendron aralioides HOM05D002278 ORTHO05D005241 4.3e-41 172.9 472 35.8
Nitab4.5_0000232g0080 Nicotiana tabacum HOM05D002278 ORTHO05D005241 9.6e-41 171.8 450 33.3
HanXRQChr05g0162691 Helianthus annuus HOM05D002278 ORTHO05D005241 1.6e-40 171.0 403 35.2
FvH4_5g37110 Fragaria vesca HOM05D002278 ORTHO05D005241 2.8e-40 170.2 440 34.5
Eucgr.B00027 Eucalyptus grandis HOM05D002278 ORTHO05D005241 3.7e-40 169.9 461 33.2
FAN18G3225 Fragaria x ananassa HOM05D002278 ORTHO05D005241 3.7e-40 169.9 443 35.7
DCAR_019222 Daucus carota HOM05D002278 ORTHO05D005241 4.8e-40 169.5 333 39.6
FAN08G3415 Fragaria x ananassa HOM05D002278 ORTHO05D005241 4.8e-40 169.5 440 34.3
PSO447G0245 Papaver somniferum HOM05D002278 ORTHO05D005241 4.8e-40 169.5 459 33.1
Cc10_g07090 Coffea canephora HOM05D002278 ORTHO05D005241 8.2e-40 168.7 479 34.2
Peaxi162Scf00392g00317 Petunia axillaris HOM05D002278 ORTHO05D005241 1.8e-39 167.5 447 34.2
PGSC0003DMG400031471 Solanum tuberosum HOM05D002278 ORTHO05D005241 1.8e-39 167.5 364 35.7
TAR376G1069 Trochodendron aralioides HOM05D002278 ORTHO05D005241 1.8e-39 167.5 442 33.5
Aqoxy5G01901 Aquilegia oxysepala HOM05D002278 ORTHO05D005241 3.1e-39 166.8 451 35.0
Psat2g071800 Pisum sativum HOM05D002278 ORTHO05D005241 3.1e-39 166.8 350 37.4
FAN13G1947 Fragaria x ananassa HOM05D002278 ORTHO05D005241 4.0e-39 166.4 443 34.5
Lsat_1_v5_gn_6_103260 Lactuca sativa HOM05D002278 ORTHO05D005241 5.3e-39 166.0 420 35.0
RcHm_v2.0_Chr7g0238651 Rosa chinensis HOM05D002278 ORTHO05D005241 9.0e-39 165.2 443 34.5
Prupe.1G518600 Prunus persica HOM05D002278 ORTHO05D005241 1.2e-38 164.9 456 34.2
MSTRG.24451 Avicennia marina HOM05D002278 ORTHO05D005241 1.5e-38 164.5 304 40.1
Nitab4.5_0000017g0030 Nicotiana tabacum HOM05D002278 ORTHO05D005241 2.0e-38 164.1 406 36.0
Glyma.13G089600 Glycine max HOM05D002278 ORTHO05D005241 2.6e-38 163.7 376 36.2
Nn5g30079 Nelumbo nucifera HOM05D002278 ORTHO05D005241 3.4e-38 163.3 328 38.4
Nitab4.5_0007108g0010 Nicotiana tabacum HOM05D002278 ORTHO05D005241 3.4e-38 163.3 448 33.9
Lj1g0005597 Lotus japonicus HOM05D002278 ORTHO05D005241 4.5e-38 162.9 393 36.4
Ca_19097_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 1.0e-37 161.8 325 37.5
TPR.G34975 Trifolium pratense HOM05D002278 ORTHO05D005241 1.0e-37 161.8 414 33.1
SalBow7G0997 Salvia bowleyana HOM05D002278 ORTHO05D005241 1.7e-37 161.0 312 37.5
CAN.G193.32 Capsicum annuum HOM05D002278 ORTHO05D005241 3.8e-37 159.8 345 36.8
MBI02_g35744_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 3.8e-37 159.8 461 31.5
MBI05_g02439_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 1.4e-36 157.9 458 33.0
Peaxi162Scf00937g00010 Petunia axillaris HOM05D002278 ORTHO05D005241 3.2e-36 156.8 386 34.5
MD00G1009800 Malus domestica HOM05D002278 ORTHO05D005241 5.5e-36 156.0 455 32.7
Duzib041G0062 Durio zibethinus HOM05D002278 ORTHO05D005241 9.3e-36 155.2 456 34.2
Nitab4.5_0001948g0010 Nicotiana tabacum HOM05D002278 ORTHO05D005241 9.3e-36 155.2 309 38.2
Oeu053213.1 Olea europaea HOM05D002278 ORTHO05D005241 1.6e-35 154.5 340 38.8
Sed0017143 Sechium edule HOM05D002278 ORTHO05D005241 2.1e-35 154.1 296 40.2
Lj1g0004815 Lotus japonicus HOM05D002278 ORTHO05D005241 4.6e-35 152.9 459 32.2
MBI05_g39047_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 4.6e-35 152.9 453 32.2
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.0e-34 151.8 351 36.2
Duzib116G0517 Durio zibethinus HOM05D002278 ORTHO05D005241 1.3e-34 151.4 450 33.8
Lalb_Chr23g0270541 Lupinus albus HOM05D002278 ORTHO05D005241 1.1e-33 148.3 390 32.8
VMungo0647G1174 Vigna mungo HOM05D002278 ORTHO05D005241 8.2e-32 142.1 372 33.3
Hund26968 Selenicereus undatus HOM05D002278 ORTHO05D005241 3.1e-31 140.2 322 34.8
HPP92_013354 Vanilla planifolia HOM05D002278 ORTHO05D005241 2.0e-30 137.5 338 34.3
CDE10G0424 Ceratophyllum demersum HOM05D002278 ORTHO05D005241 7.7e-30 135.6 451 30.4
RcHm_v2.0_Chr7g0243931 Rosa chinensis HOM05D002278 ORTHO05D005241 7.7e-30 135.6 237 41.8
TAR381G0365 Trochodendron aralioides HOM05D002278 ORTHO05D005241 4.2e-28 129.8 202 40.1
Zm00001eb027820 Zea mays HOM05D002278 ORTHO05D005241 2.1e-27 127.5 334 33.8
Nn1g05386 Nelumbo nucifera HOM05D002278 ORTHO05D005241 2.7e-27 127.1 444 32.2
Actinidia10329 Actinidia chinensis HOM05D002278 ORTHO05D005241 2.3e-26 124.0 287 36.6
CDE10G0135 Ceratophyllum demersum HOM05D002278 ORTHO05D005241 2.5e-25 120.6 216 38.4
HPP92_019305 Vanilla planifolia HOM05D002278 ORTHO05D005241 2.5e-25 120.6 326 32.5
Os03g0190300 Oryza sativa ssp. japonica HOM05D002278 ORTHO05D005241 1.3e-24 118.2 331 32.9
Zm00001eb401390 Zea mays HOM05D002278 ORTHO05D005241 1.1e-23 115.2 291 34.0
Os10g0376200 Oryza sativa ssp. japonica HOM05D002278 ORTHO05D005241 4.5e-22 109.8 252 34.1
Psat4g118680 Pisum sativum HOM05D002278 ORTHO05D005241 1.3e-21 108.2 163 42.3
Zm00001eb006860 Zea mays HOM05D002278 ORTHO05D005241 1.3e-21 108.2 302 31.8
SEGI_29472 Sequoiadendron giganteum HOM05D002278 ORTHO05D005241 1.1e-20 105.1 252 32.5
Lalb_Chr08g0242091 Lupinus albus HOM05D002278 ORTHO05D005241 1.0e-18 98.6 346 29.5
Actinidia10330 Actinidia chinensis HOM05D002278 ORTHO05D005241 4.8e-16 89.7 119 47.1
unitig_32.g11122 Utricularia gibba HOM05D002278 ORTHO05D005241 1.1e-12 78.6 225 30.2
arahy.Tifrunner.gnm1.ann1.1MH1B4 Arachis hypogaea HOM05D000026 ORTHO05D000094 4.2e-12 76.6 138 38.4
arahy.Tifrunner.gnm1.ann1.C3JXZJ Arachis hypogaea HOM05D000026 ORTHO05D000094 7.2e-12 75.9 161 35.4
arahy.Tifrunner.gnm1.ann1.NXEY7R Arachis hypogaea HOM05D000026 ORTHO05D000094 7.2e-12 75.9 161 35.4
arahy.Tifrunner.gnm1.ann1.WEDR4A Arachis hypogaea HOM05D002278 ORTHO05D005241 4.7e-11 73.2 82 46.3
arahy.Tifrunner.gnm1.ann1.UIPR69 Arachis hypogaea HOM05D000026 ORTHO05D000094 1.0e-10 72.0 68 48.5
arahy.Tifrunner.gnm1.ann1.34WEUP Arachis hypogaea HOM05D003470 ORTHO05D004157 1.8e-10 71.2 80 45.0
arahy.Tifrunner.gnm1.ann1.AQ3PBY Arachis hypogaea HOM05D000026 ORTHO05D000094 1.8e-10 71.2 84 45.2
arahy.Tifrunner.gnm1.ann1.BDA5VD Arachis hypogaea HOM05D003470 ORTHO05D004157 1.8e-10 71.2 80 45.0
arahy.Tifrunner.gnm1.ann1.S47HJ5 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.8e-10 71.2 80 45.0
arahy.Tifrunner.gnm1.ann1.GJW1JW Arachis hypogaea HOM05D003470 ORTHO05D004157 2.3e-10 70.9 79 45.6
arahy.Tifrunner.gnm1.ann1.BH8VCP Arachis hypogaea HOM05D002278 ORTHO05D005241 2.0e-09 67.8 84 44.0
Nn3g20949 Nelumbo nucifera HOM05D002278 ORTHO05D005241 7.4e-09 65.9 37 78.4
arahy.Tifrunner.gnm1.ann1.XXM254 Arachis hypogaea HOM05D002278 ORTHO05D005241 1.7e-08 64.7 80 43.8
Nn2g15617 Nelumbo nucifera HOM05D002278 ORTHO05D005241 1.1e-07 62.0 45 68.9


User provided reference genes

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