Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 1.1e-59 233.0 116 100.0
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 4.8e-26 121.3 73 86.3
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 6.3e-26 120.9 76 82.9
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 8.2e-26 120.6 72 86.1
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 8.2e-26 120.6 72 84.7
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 8.2e-26 120.6 76 81.6
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 8.2e-26 120.6 76 81.6
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 3.1e-25 118.6 77 81.8
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 3.1e-25 118.6 84 76.2
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 3.1e-25 118.6 72 84.7
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 7.0e-25 117.5 72 83.3
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 7.0e-25 117.5 72 83.3
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 9.1e-25 117.1 76 81.6
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 3.5e-24 115.2 72 81.9
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 4.5e-24 114.8 75 84.0
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 7.7e-24 114.0 72 81.9
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 1.3e-23 113.2 72 81.9
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 1.3e-23 113.2 66 84.8
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 3.8e-23 111.7 72 80.6
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 5.0e-23 111.3 72 77.8
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.2e-21 106.7 72 73.6
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.7e-21 105.5 72 72.2
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 6.1e-21 104.4 73 72.6
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 3.0e-20 102.1 72 73.6
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 4.0e-20 101.7 72 70.8
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 4.0e-20 101.7 73 71.2
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 4.0e-20 101.7 72 70.8
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 5.2e-20 101.3 73 68.5
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 5.2e-20 101.3 73 69.9
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 6.8e-20 100.9 71 70.4
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 6.8e-20 100.9 72 70.8
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 1.2e-19 100.1 72 69.4
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.5e-19 99.8 72 72.2
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 2.0e-19 99.4 72 66.7
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 2.0e-19 99.4 72 69.4
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 2.0e-19 99.4 73 71.2
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 2.6e-19 99.0 72 70.8
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 2.6e-19 99.0 71 70.4
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 2.6e-19 99.0 99 57.6
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 3.4e-19 98.6 72 69.4
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 3.4e-19 98.6 71 69.0
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 4.4e-19 98.2 72 69.4
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 4.4e-19 98.2 71 69.0
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 4.4e-19 98.2 71 69.0
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 4.4e-19 98.2 72 69.4
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 4.4e-19 98.2 72 70.8
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 5.7e-19 97.8 73 68.5
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 5.7e-19 97.8 72 69.4
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 7.5e-19 97.4 72 69.4
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 7.5e-19 97.4 72 69.4
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 7.5e-19 97.4 72 68.1
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 9.7e-19 97.1 72 68.1
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 9.7e-19 97.1 71 69.0
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 1.3e-18 96.7 72 68.1
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.3e-18 96.7 72 68.1
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 1.3e-18 96.7 73 65.8
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 1.7e-18 96.3 72 68.1
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 2.2e-18 95.9 72 65.3
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 2.2e-18 95.9 72 65.3
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 2.2e-18 95.9 72 65.3
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 2.2e-18 95.9 72 65.3
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 2.8e-18 95.5 72 65.3
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 2.8e-18 95.5 73 65.8
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 2.8e-18 95.5 73 67.1
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 3.7e-18 95.1 72 68.1
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 3.7e-18 95.1 71 66.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.7e-18 95.1 71 66.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.7e-18 95.1 71 66.2
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 4.8e-18 94.7 71 67.6
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 4.8e-18 94.7 73 67.1
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 4.8e-18 94.7 73 67.1
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 4.8e-18 94.7 72 68.1
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 6.3e-18 94.4 72 66.7
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 8.3e-18 94.0 72 66.7
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 8.3e-18 94.0 81 63.0
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 8.3e-18 94.0 73 64.4
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.1e-17 93.6 72 65.3
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 1.1e-17 93.6 72 65.3
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 1.1e-17 93.6 62 80.6
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.1e-17 93.6 71 66.2
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 1.1e-17 93.6 79 64.6
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 1.1e-17 93.6 73 65.8
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 1.1e-17 93.6 73 65.8
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 1.4e-17 93.2 72 63.9
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 1.4e-17 93.2 72 63.9
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 1.8e-17 92.8 73 63.0
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 1.8e-17 92.8 72 63.9
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 1.8e-17 92.8 73 64.4
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 2.4e-17 92.4 87 64.4
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 2.4e-17 92.4 72 63.9
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 3.1e-17 92.0 72 63.9
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 9.1e-17 90.5 73 61.6
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 9.1e-17 90.5 59 74.6
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 9.1e-17 90.5 59 74.6
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 9.1e-17 90.5 71 60.6
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 9.1e-17 90.5 71 64.8
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 9.1e-17 90.5 71 64.8
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 9.1e-17 90.5 72 65.3
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 1.2e-16 90.1 87 63.2
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 1.2e-16 90.1 72 63.9
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 4.5e-16 88.2 72 58.3
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 7.7e-16 87.4 72 66.7
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 1.0e-15 87.0 79 62.0
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 1.3e-15 86.7 87 60.9
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 1.7e-15 86.3 88 59.1
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 1.7e-15 86.3 87 59.8
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 2.9e-15 85.5 87 59.8
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 2.9e-15 85.5 87 59.8
C03p54870 Brassica napus HOM05D003546 ORTHO05D005667 3.8e-15 85.1 73 65.8
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 6.5e-15 84.3 71 59.2
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 8.5e-15 84.0 87 56.3
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 8.5e-15 84.0 87 59.8
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 1.1e-14 83.6 77 55.8
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 1.5e-14 83.2 72 54.2
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 1.5e-14 83.2 73 54.8
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 2.5e-14 82.4 72 55.6
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 2.5e-14 82.4 71 57.7
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 4.2e-14 81.6 71 57.7
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 7.2e-14 80.9 52 76.9
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 7.2e-14 80.9 72 55.6
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 9.4e-14 80.5 97 46.4
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 1.2e-13 80.1 53 73.6
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 1.2e-13 80.1 80 56.2
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 1.6e-13 79.7 68 67.6
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 2.7e-13 79.0 65 69.2
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 3.6e-13 78.6 51 80.4
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 3.6e-13 78.6 51 80.4
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 6.1e-13 77.8 72 51.4
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 8.0e-13 77.4 51 80.4
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 8.0e-13 77.4 51 80.4
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.0e-12 77.0 61 62.3
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 1.8e-12 76.3 51 78.4
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 3.0e-12 75.5 72 52.8
BcaB08g35084 Brassica carinata HOM05D003546 ORTHO05D005667 4.0e-12 75.1 51 78.4
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 4.0e-12 75.1 50 72.0
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 5.2e-12 74.7 60 63.3
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 8.8e-12 73.9 49 77.6
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 1.5e-11 73.2 54 70.4
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 1.5e-11 73.2 51 66.7
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 2.6e-11 72.4 49 71.4
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 4.4e-11 71.6 76 47.4
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 1.3e-10 70.1 70 52.9
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 1.7e-10 69.7 71 52.1
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 8.3e-10 67.4 71 49.3
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 1.4e-09 66.6 77 46.8
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 2.4e-09 65.9 59 57.6
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 2.4e-09 65.9 77 45.5
C01p09430 Brassica napus HOM05D063129 ORTHO05D041175 7.0e-09 64.3 73 54.8
BolC1t00931H Brassica oleracea HOM05D063129 ORTHO05D041175 7.0e-09 64.3 54 70.4
BcaC07g41321 Brassica carinata HOM05D003546 ORTHO05D005667 1.6e-08 63.2 72 54.2
A09p22480 Brassica napus HOM05D003546 ORTHO05D014122 1.7e-07 59.7 35 82.9
BcaB06g26617 Brassica carinata HOM05D003546 ORTHO05D091407 2.9e-07 58.9 73 47.9
MCO15G239 Micromonas commoda HOM05D003546 ORTHO05D005667 6.6e-07 57.8 76 46.1
BcaB01g02368 Brassica carinata HOM05D047160 ORTHO05D096100 5.5e-06 54.7 35 80.0
A05p16200 Brassica napus HOM05D055649 ORTHO05D101691 7.2e-06 54.3 41 75.6
A09p25380 Brassica napus HOM05D055649 ORTHO05D097052 7.2e-06 54.3 41 75.6


User provided reference genes

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