Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 8.0e-101 370.5 202 100.0
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 7.0e-89 330.9 213 86.9
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 7.0e-89 330.9 213 84.0
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 7.0e-89 330.9 213 86.9
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 8.3e-66 254.2 141 92.2
BcaNung03485 Brassica carinata HOM05D002376 ORTHO05D004654 1.3e-37 160.6 115 80.0
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 2.1e-37 159.8 87 93.1
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-37 159.5 113 77.0
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 2.8e-37 159.5 113 77.0
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 4.8e-37 158.7 115 80.0
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 1.5e-35 153.7 113 77.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 6.4e-34 148.3 91 86.8
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 8.4e-34 147.9 91 85.7
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 3.5e-32 142.5 110 77.3
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 2.3e-31 139.8 116 74.1
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 5.6e-30 135.2 110 68.2
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 8.1e-29 131.3 110 74.5
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 5.3e-28 128.6 116 70.7
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 3.4e-27 125.9 112 64.3
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 4.5e-27 125.6 110 70.0
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 4.5e-27 125.6 110 70.0
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 8.4e-26 121.3 113 62.8
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 1.1e-25 120.9 83 77.1
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 4.2e-25 119.0 83 77.1
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 4.2e-25 119.0 108 68.5
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 1.0e-23 114.4 112 62.5
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-23 114.0 114 63.2
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-23 114.0 114 63.2
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 2.3e-23 113.2 112 58.0
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 4.3e-22 109.0 114 57.9
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 2.1e-21 106.7 111 60.4
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 1.1e-20 104.4 87 62.1
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 1.8e-20 103.6 79 67.1
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 4.0e-20 102.4 90 62.2
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 6.9e-20 101.7 82 64.6
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 1.0e-18 97.8 82 61.0
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 1.3e-18 97.4 77 64.9
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 1.3e-18 97.4 82 61.0
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 2.2e-18 96.7 65 69.2
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 2.2e-18 96.7 69 66.7
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 4.9e-18 95.5 77 64.9
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 6.5e-18 95.1 114 50.0
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 6.5e-18 95.1 69 65.2
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 6.5e-18 95.1 64 71.9
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 6.5e-18 95.1 69 65.2
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 6.5e-18 95.1 69 65.2
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 6.5e-18 95.1 77 63.6
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 8.4e-18 94.7 77 61.0
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 8.4e-18 94.7 64 73.4
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 1.1e-17 94.4 69 65.2
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-17 94.0 63 73.0
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.4e-17 94.0 63 73.0
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 1.4e-17 94.0 64 71.9
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-17 93.6 63 71.4
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-17 93.6 63 71.4
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.9e-17 93.6 63 71.4
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 1.9e-17 93.6 90 58.9
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 2.5e-17 93.2 64 70.3
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 5.5e-17 92.0 82 58.5
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 5.5e-17 92.0 95 54.7
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 5.5e-17 92.0 65 67.7
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.2e-16 90.9 65 67.7
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.1e-16 90.1 63 71.4
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 2.1e-16 90.1 119 43.7
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 3.5e-16 89.4 91 56.0
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 4.6e-16 89.0 69 63.8
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 4.6e-16 89.0 132 42.4
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 6.0e-16 88.6 63 69.8
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 6.0e-16 88.6 105 49.5
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.0e-15 87.8 84 54.8
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.0e-15 87.8 63 68.3
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.0e-15 87.8 63 68.3
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 1.0e-15 87.8 93 51.6
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.3e-15 87.4 81 56.8
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 1.3e-15 87.4 64 65.6
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.3e-15 87.4 64 65.6
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 1.8e-15 87.0 89 56.2
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 1.8e-15 87.0 97 50.5
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 1.8e-15 87.0 111 45.9
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 2.3e-15 86.7 63 65.1
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 3.0e-15 86.3 85 55.3
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 3.9e-15 85.9 93 49.5
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 3.9e-15 85.9 67 62.7
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 3.9e-15 85.9 82 53.7
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 3.9e-15 85.9 83 54.2
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 5.1e-15 85.5 91 49.5
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 5.1e-15 85.5 64 67.2
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 8.7e-15 84.7 91 49.5
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.7e-15 84.7 62 67.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.7e-15 84.7 63 68.3
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 8.7e-15 84.7 83 54.2
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 1.1e-14 84.3 67 61.2
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 1.1e-14 84.3 82 52.4
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 1.5e-14 84.0 62 67.7
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 1.5e-14 84.0 93 49.5
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 1.5e-14 84.0 105 46.7
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 1.5e-14 84.0 97 46.4
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 1.9e-14 83.6 105 44.8
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 2.5e-14 83.2 111 44.1
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 2.5e-14 83.2 83 53.0
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 3.3e-14 82.8 84 52.4
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 4.3e-14 82.4 94 53.2
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 4.3e-14 82.4 84 52.4
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 4.3e-14 82.4 104 44.2
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 4.3e-14 82.4 115 40.9
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 5.7e-14 82.0 69 58.0
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 5.7e-14 82.0 89 52.8
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 5.7e-14 82.0 79 54.4
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 5.7e-14 82.0 79 54.4
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 5.7e-14 82.0 63 65.1
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 5.7e-14 82.0 77 58.4
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 7.4e-14 81.6 91 51.6
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 7.4e-14 81.6 109 45.9
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 7.4e-14 81.6 109 45.9
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 7.4e-14 81.6 109 45.9
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 7.4e-14 81.6 83 53.0
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 9.6e-14 81.3 104 42.3
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 9.6e-14 81.3 83 53.0
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.6e-13 80.5 100 46.0
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 2.8e-13 79.7 72 55.6
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.8e-13 79.7 84 54.8
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.8e-13 79.7 84 54.8
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 2.8e-13 79.7 77 51.9
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 4.8e-13 79.0 64 60.9
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 6.2e-13 78.6 91 50.5
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 6.2e-13 78.6 122 44.3
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 6.2e-13 78.6 83 51.8
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.1e-12 77.8 65 55.4
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 1.1e-12 77.8 68 55.9
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 1.4e-12 77.4 85 55.3
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 2.4e-12 76.6 117 41.9
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 4.1e-12 75.9 63 61.9
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 4.1e-12 75.9 62 62.9
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 4.5e-11 72.4 90 44.4
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 4.5e-11 72.4 81 49.4
BcaC06g30638 Brassica carinata HOM05D002376 ORTHO05D004654 1.3e-10 70.9 76 61.8
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.3e-10 70.9 44 70.5
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 1.4e-09 67.4 80 47.5
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 4.2e-09 65.9 68 50.0
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 2.1e-08 63.5 83 48.2
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 1.3e-07 60.8 60 56.7
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.8e-07 60.5 38 71.1
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 6.7e-07 58.5 84 39.3
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 1.5e-06 57.4 41 78.0
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 9.7e-06 54.7 38 65.8


User provided reference genes

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