Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 7.2e-113 410.6 209 100.0
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 2.0e-110 402.5 209 98.1
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 3.9e-103 378.3 205 93.2
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 3.9e-103 378.3 205 93.2
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.1e-102 376.7 205 92.2
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.1e-102 376.7 205 92.7
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.2e-101 372.5 205 92.7
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.2e-101 372.5 205 92.7
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.2e-99 366.7 205 91.2
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 4.5e-99 364.8 205 89.3
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 7.7e-99 364.0 205 89.3
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 1.3e-98 363.2 211 88.2
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 2.2e-98 362.5 205 89.3
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 7.5e-94 347.4 204 86.8
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 3.1e-92 342.0 202 86.6
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 1.3e-90 336.7 205 82.0
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 3.1e-84 315.5 208 76.9
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.7e-83 312.4 206 76.2
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 1.7e-82 309.7 205 76.1
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.6e-80 302.0 206 72.3
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 3.6e-80 302.0 207 71.5
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 6.1e-80 301.2 205 71.7
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 6.1e-80 301.2 205 71.7
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 4.0e-79 298.5 207 72.0
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.2e-78 297.0 178 80.3
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 3.4e-78 295.4 205 70.7
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.4e-78 295.4 178 80.3
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 3.1e-76 288.9 205 69.8
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 3.1e-76 288.9 205 71.7
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.7e-75 285.8 208 70.7
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 3.5e-75 285.4 205 70.2
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 5.9e-75 284.6 205 69.3
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.9e-75 284.6 206 68.4
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 1.0e-74 283.9 206 69.9
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 1.0e-74 283.9 206 69.9
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.3e-74 282.7 206 68.9
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 2.9e-74 282.3 207 68.1
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 2.9e-74 282.3 206 69.9
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 3.9e-74 282.0 207 69.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 5.0e-74 281.6 206 70.4
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 8.6e-74 280.8 206 67.5
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 2.5e-73 279.3 206 67.5
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 4.3e-73 278.5 205 68.8
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 5.6e-73 278.1 205 66.3
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.3e-73 277.7 211 68.7
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 9.5e-73 277.3 174 75.9
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 9.5e-73 277.3 211 68.7
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 1.2e-72 276.9 206 68.0
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.6e-72 276.6 206 68.9
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.6e-72 276.6 211 68.2
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 1.6e-72 276.6 208 64.4
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 2.1e-72 276.2 205 66.3
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 3.6e-72 275.4 205 67.3
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 6.1e-72 274.6 205 68.8
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 1.4e-71 273.5 210 65.2
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 1.8e-71 273.1 208 67.8
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 2.3e-71 272.7 206 68.0
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 2.3e-71 272.7 205 65.4
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 3.1e-71 272.3 206 66.5
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 3.1e-71 272.3 178 71.3
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 3.1e-71 272.3 206 67.5
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 6.8e-71 271.2 204 67.2
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.5e-70 270.0 206 65.5
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.0e-70 269.6 204 66.7
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 2.6e-70 269.2 176 74.4
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 4.4e-70 268.5 206 65.0
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 4.4e-70 268.5 177 74.0
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 5.8e-70 268.1 178 72.5
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 7.5e-70 267.7 205 66.8
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 9.8e-70 267.3 207 64.3
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.3e-69 266.9 205 65.4
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.3e-69 266.9 205 65.9
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.2e-69 266.2 206 64.6
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 2.9e-69 265.8 205 66.3
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 3.7e-69 265.4 184 70.7
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.1e-68 263.8 174 74.1
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 1.1e-68 263.8 205 62.4
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.4e-68 263.5 178 71.3
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 1.9e-68 263.1 167 80.8
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 2.4e-68 262.7 207 64.7
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 3.2e-68 262.3 205 66.3
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 3.2e-68 262.3 205 64.4
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 3.2e-68 262.3 205 64.4
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 4.1e-68 261.9 205 65.9
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 7.0e-68 261.2 206 64.1
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.2e-67 260.4 205 66.3
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 2.0e-67 259.6 205 63.9
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 4.6e-67 258.5 184 70.1
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 1.3e-66 256.9 178 72.5
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.7e-66 256.5 172 71.5
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 1.7e-66 256.5 215 63.7
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 1.7e-66 256.5 177 71.2
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 3.0e-66 255.8 206 63.1
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 3.3e-65 252.3 210 63.3
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.1e-64 249.6 229 58.1
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.8e-63 246.5 208 60.6
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.3e-63 246.1 198 62.6
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.5e-62 243.4 208 59.6
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 2.6e-62 242.7 206 57.3
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.4e-62 242.3 185 65.9
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 4.1e-60 235.3 205 59.0
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 5.4e-60 235.0 175 65.1
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.0e-58 230.7 205 60.5
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.3e-58 229.6 252 50.4
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 6.6e-58 228.0 174 65.5
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 4.3e-57 225.3 175 63.4
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 7.3e-57 224.6 206 63.6
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 8.1e-56 221.1 193 60.6
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 8.9e-55 217.6 210 54.8
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.5e-54 216.9 178 59.0
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 5.4e-52 208.4 178 60.1
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.6e-51 206.8 151 66.9
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 2.7e-51 206.1 146 70.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.6e-51 205.3 183 59.0
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 2.3e-50 203.0 116 80.2
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 3.9e-50 202.2 199 55.8
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.4e-44 183.0 195 49.2
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.7e-43 179.5 101 80.2
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 1.5e-41 173.7 205 47.8
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 4.0e-39 165.6 143 62.2
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 5.3e-39 165.2 174 51.7
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.2e-38 164.1 126 69.0
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 1.7e-37 160.2 153 54.9
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 3.3e-33 146.0 68 100.0
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.8e-29 132.5 201 38.8
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.0e-26 124.4 65 83.1
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 3.9e-26 122.5 93 64.5
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 2.5e-25 119.8 117 53.8
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 2.4e-23 113.2 57 87.7
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 2.1e-19 100.1 72 63.9
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 4.0e-15 85.9 78 59.0
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.9e-13 79.7 78 53.8
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.6e-11 72.4 72 52.8
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 1.3e-10 70.9 73 54.8
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 5.7e-09 65.5 53 60.4
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 3.4e-06 56.2 102 36.3


User provided reference genes

Program Settings