Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 7.2e-89 330.5 159 100.0
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 7.4e-86 320.5 159 97.5
C01p11650 Brassica napus HOM05D026831 ORTHO05D011195 1.5e-62 243.0 120 95.8
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 3.8e-13 79.0 97 47.4
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 4.9e-13 78.6 122 42.6
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 1.1e-12 77.4 107 43.9
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 1.1e-12 77.4 107 43.9
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 1.1e-12 77.4 107 43.9
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 2.7e-11 72.8 97 43.3
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 3.5e-11 72.4 97 44.3
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 3.5e-11 72.4 97 43.3
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 4.6e-11 72.0 151 35.8
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 6.0e-11 71.6 95 44.2
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 1.3e-10 70.5 140 37.1
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 3.0e-10 69.3 97 43.3
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 3.9e-10 68.9 153 35.9
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 5.1e-10 68.6 152 35.5
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 1.9e-09 66.6 118 40.7
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 1.9e-09 66.6 118 40.7
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.5e-09 66.2 143 35.7
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.8e-07 60.1 98 38.8
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 2.4e-07 59.7 107 38.3
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 3.1e-07 59.3 111 36.9
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 4.0e-07 58.9 153 32.7
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 4.0e-07 58.9 137 35.0
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 4.0e-07 58.9 93 38.7
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 5.3e-07 58.5 113 35.4
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 6.9e-07 58.2 106 37.7
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 6.9e-07 58.2 140 34.3
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 6.9e-07 58.2 122 36.1
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 6.9e-07 58.2 95 36.8
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 9.0e-07 57.8 97 38.1
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.2e-06 57.4 97 37.1
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 1.2e-06 57.4 86 41.9
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.2e-06 57.4 97 38.1
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.2e-06 57.4 97 38.1
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 1.2e-06 57.4 116 35.3
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 1.2e-06 57.4 143 32.2
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.2e-06 57.4 104 35.6
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 1.2e-06 57.4 134 33.6
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 1.5e-06 57.0 142 33.8
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 1.5e-06 57.0 128 35.2
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 1.5e-06 57.0 106 36.8
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 1.5e-06 57.0 101 36.6
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 2.0e-06 56.6 121 36.4
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 2.0e-06 56.6 93 38.7
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 2.0e-06 56.6 94 39.4
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 2.6e-06 56.2 94 39.4
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 2.6e-06 56.2 106 35.8
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 3.4e-06 55.8 138 34.1
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 3.4e-06 55.8 138 34.1
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 3.4e-06 55.8 119 37.0
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 3.4e-06 55.8 94 38.3
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 3.4e-06 55.8 72 44.4
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 3.4e-06 55.8 125 33.6
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 3.4e-06 55.8 94 39.4
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 3.4e-06 55.8 100 37.0
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 4.5e-06 55.5 106 37.7
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.5e-06 55.5 128 35.2
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 4.5e-06 55.5 109 38.5
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 5.8e-06 55.1 106 37.7
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 5.8e-06 55.1 106 37.7
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.8e-06 55.1 106 37.7
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 7.6e-06 54.7 106 36.8
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 7.6e-06 54.7 106 36.8
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 7.6e-06 54.7 94 38.3
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 7.6e-06 54.7 94 38.3
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 7.6e-06 54.7 110 36.4
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 7.6e-06 54.7 111 36.9
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 7.6e-06 54.7 158 30.4
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 7.6e-06 54.7 93 36.6
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 9.9e-06 54.3 97 36.1
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 9.9e-06 54.3 97 35.1
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 9.9e-06 54.3 130 31.5
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 9.9e-06 54.3 135 34.1
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 9.9e-06 54.3 136 35.3


User provided reference genes

Program Settings