Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 0.0e+00 1154.8 562 100.0
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 0.0e+00 1145.6 562 99.1
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 0.0e+00 1143.3 562 98.9
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 0.0e+00 1116.7 570 95.8
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 0.0e+00 1111.7 563 95.4
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 0.0e+00 1111.3 563 95.7
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 0.0e+00 1110.1 563 95.4
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 0.0e+00 1109.7 563 95.4
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 0.0e+00 1107.4 563 95.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 0.0e+00 1095.9 563 94.3
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.7e-310 1068.5 563 91.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 9.1e-296 1019.6 557 88.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 6.3e-289 996.9 549 85.6
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 8.2e-289 996.5 550 86.2
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.1e-288 996.1 560 84.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.1e-288 996.1 550 86.2
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.4e-288 995.0 550 85.8
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 3.1e-288 994.6 549 85.2
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.1e-288 994.2 550 86.0
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.0e-287 991.9 549 85.6
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 5.9e-287 990.3 549 85.4
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 7.7e-287 989.9 549 85.6
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-286 989.6 549 85.4
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.2e-286 988.4 549 85.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.5e-285 985.7 556 82.9
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.9e-285 985.3 549 85.1
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-285 984.9 549 85.2
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 5.5e-285 983.8 553 85.7
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 7.2e-285 983.4 551 85.7
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 9.4e-285 983.0 551 85.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.7e-284 981.5 552 83.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 6.1e-284 980.3 568 81.9
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.4e-283 979.2 549 84.0
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 5.2e-283 977.2 559 83.5
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 5.2e-283 977.2 549 83.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 6.8e-283 976.9 549 84.0
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 2.0e-282 975.3 564 81.9
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 4.4e-282 974.2 552 83.3
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.5e-282 973.4 549 83.4
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.3e-281 972.6 549 83.4
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.7e-281 972.2 549 83.2
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 2.8e-281 971.5 549 83.6
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.7e-281 971.1 549 83.6
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 3.7e-281 971.1 552 83.0
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 8.3e-281 969.9 549 83.2
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.1e-280 968.0 552 83.3
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.1e-280 967.6 546 83.7
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.2e-279 966.1 549 82.5
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 2.7e-279 964.9 549 83.1
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 5.9e-279 963.8 549 82.5
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 7.7e-279 963.4 549 82.1
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.7e-279 963.4 549 82.9
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.2e-278 961.8 564 81.6
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.9e-278 961.4 551 83.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.8e-278 961.1 553 82.3
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.0e-278 960.7 549 82.9
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 8.5e-278 959.9 549 81.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 1.9e-277 958.7 551 81.9
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 9.4e-277 956.4 553 81.0
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.0e-275 953.0 549 81.8
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 6.8e-275 950.3 549 81.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.8e-275 950.3 549 81.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 6.8e-275 950.3 544 82.9
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 6.8e-275 950.3 573 79.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 8.8e-275 949.9 552 82.4
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 8.8e-275 949.9 549 81.6
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 2.0e-274 948.7 579 78.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.6e-274 948.3 552 80.6
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 7.5e-274 946.8 551 81.9
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 9.8e-274 946.4 552 80.4
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 3.7e-273 944.5 546 81.9
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.1e-272 943.0 548 81.6
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.2e-271 939.5 549 80.5
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.2e-271 939.5 549 80.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.0e-271 938.7 548 80.3
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.0e-271 938.7 555 80.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 4.5e-271 937.6 549 80.1
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.7e-271 936.8 542 81.2
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.2e-268 929.5 549 79.8
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.0e-267 926.4 549 79.8
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.4e-267 926.0 550 79.6
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.8e-267 925.6 546 79.1
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.3e-267 925.2 546 80.0
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 5.2e-267 924.1 569 77.2
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.4e-266 921.4 569 77.7
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 3.4e-266 921.4 549 79.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 4.1e-264 914.4 543 79.6
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 5.4e-264 914.1 543 80.5
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 9.2e-264 913.3 541 79.7
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.8e-263 910.2 545 78.2
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.0e-262 909.8 499 86.4
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.9e-262 908.3 549 78.7
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.6e-262 907.1 554 79.2
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.2e-260 902.9 517 82.8
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.2e-257 892.1 542 77.5
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 7.8e-255 883.6 549 78.5
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.6e-252 874.8 552 77.0
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.6e-247 857.8 555 75.7
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.6e-247 857.8 543 75.1
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 8.6e-246 853.6 549 74.5
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.1e-245 853.2 545 74.9
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 3.6e-244 848.2 549 74.7
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.1e-243 846.7 497 79.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.8e-243 845.9 538 74.3
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.3e-243 845.5 538 74.3
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.5e-239 831.6 559 71.9
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 2.3e-238 828.9 549 71.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 4.4e-234 814.7 562 73.0
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.9e-229 799.3 544 72.6
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.5e-229 798.9 455 84.6
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.4e-227 793.1 503 76.1
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 3.4e-226 788.5 548 69.5
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.9e-221 772.7 552 69.6
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 7.3e-221 770.8 540 68.3
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.3e-220 770.0 538 67.3
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 6.9e-219 764.2 423 85.8
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 9.3e-216 753.8 424 84.7
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.0e-211 737.3 535 66.0
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 3.8e-209 731.9 539 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.8e-204 714.9 538 64.1
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.7e-196 688.7 531 63.8
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.7e-196 688.7 531 63.8
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.5e-189 666.0 609 59.1
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 7.0e-163 578.2 330 83.9
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.2e-159 567.4 334 80.2
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-152 543.9 554 55.2
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.6e-143 513.8 545 49.5
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.4e-142 510.8 292 83.9
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.1e-131 472.6 306 73.9
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.1e-126 458.0 309 73.1
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 3.3e-120 436.4 350 64.9
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.4e-99 367.9 199 86.9
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 3.9e-89 333.2 200 81.0
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.7e-81 305.8 501 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-69 268.5 335 45.4
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 5.3e-62 243.0 129 90.7
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.9e-60 237.3 137 84.7
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-57 228.4 127 87.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-57 228.4 127 87.4
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.3e-57 227.6 133 81.2
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 7.5e-56 222.6 120 88.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 7.5e-56 222.6 120 88.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 7.7e-53 212.6 119 86.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 7.7e-53 212.6 119 86.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 7.7e-53 212.6 139 73.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.5e-48 198.4 109 78.0
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.8e-46 191.4 111 77.5
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.3e-44 185.3 114 72.8
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.5e-43 181.0 119 72.3
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 6.8e-41 172.9 95 80.0
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.5e-35 152.5 76 90.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 8.3e-31 139.4 79 83.5
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.2e-24 119.0 118 49.2
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 9.8e-24 115.9 189 41.8
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.4e-23 113.2 86 61.6
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 9.2e-22 109.4 121 47.1
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 9.5e-19 99.4 62 72.6
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.4e-14 84.7 63 66.7


User provided reference genes

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