Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 0.0e+00 1379.4 704 100.0
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 8.9e-20 103.2 208 41.8
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 1.9e-17 95.5 191 40.8
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 3.2e-17 94.7 197 42.1
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 3.2e-17 94.7 197 42.1
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 7.0e-17 93.6 210 39.5
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 1.2e-16 92.8 215 38.1
BcaC03g12988 Brassica carinata HOM05D007309 ORTHO05D010099 1.6e-16 92.4 126 41.3
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 2.0e-16 92.0 195 43.1
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 2.0e-16 92.0 195 43.1
Sp6g38610 Schrenkiella parvula HOM05D001433 ORTHO05D005172 6.0e-16 90.5 90 61.1
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.0e-15 89.7 205 38.0
BcaC06g32116 Brassica carinata HOM05D001433 ORTHO05D005172 1.9e-14 85.5 84 63.1
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 1.9e-14 85.5 171 43.9
C09p72720 Brassica napus HOM05D001433 ORTHO05D005172 1.9e-14 85.5 84 63.1
CARHR209130 Cardamine hirsuta HOM05D001433 ORTHO05D005172 1.9e-14 85.5 89 58.4
A10p32000 Brassica napus HOM05D001433 ORTHO05D005172 3.3e-14 84.7 84 63.1
BolC9t60011H Brassica oleracea HOM05D001433 ORTHO05D005172 5.6e-14 84.0 84 61.9
Thhalv10012425m.g Eutrema salsugineum HOM05D001433 ORTHO05D005172 5.6e-14 84.0 89 58.4
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 1.6e-13 82.4 190 38.9
AL6G13760 Arabidopsis lyrata HOM05D001433 ORTHO05D005172 2.1e-13 82.0 88 61.4
BraA10t45244Z Brassica rapa HOM05D001433 ORTHO05D005172 3.6e-13 81.3 84 61.9
AT5G04140 Arabidopsis thaliana HOM05D001433 ORTHO05D005172 6.8e-12 77.0 89 52.8
Carub.0006s0309 Capsella rubella HOM05D001433 ORTHO05D005172 6.8e-12 77.0 89 55.1
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.5e-11 75.9 43 93.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.4e-11 74.3 43 90.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 7.5e-11 73.6 43 90.7
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 9.8e-11 73.2 43 88.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-10 72.8 43 90.7
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-10 72.8 43 90.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.7e-10 72.4 43 88.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 4.9e-10 70.9 43 86.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 4.9e-10 70.9 43 86.0
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.9e-10 70.9 42 88.1
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 4.9e-10 70.9 42 88.1
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 4.9e-10 70.9 42 88.1
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 4.9e-10 70.9 42 88.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 4.9e-10 70.9 42 88.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 8.3e-10 70.1 44 86.4
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.1e-09 69.7 43 83.7
THA.LOC104816414 Tarenaya hassleriana HOM05D001433 ORTHO05D005172 5.4e-09 67.4 90 50.0
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.2e-08 66.2 43 79.1
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 3.5e-08 64.7 43 74.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.5e-08 64.7 43 76.7
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.5e-08 64.7 43 76.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.6e-08 64.3 77 50.6
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 6.0e-08 63.9 43 76.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 6.0e-08 63.9 43 76.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 6.0e-08 63.9 44 72.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 6.0e-08 63.9 43 76.7
Aa31LG1G21190 Aethionema arabicum HOM05D001433 ORTHO05D005172 7.8e-08 63.5 83 48.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 7.8e-08 63.5 44 75.0
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 7.8e-08 63.5 44 75.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 7.8e-08 63.5 43 76.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 7.8e-08 63.5 43 76.7
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 7.8e-08 63.5 43 74.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.0e-07 63.2 43 74.4
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.0e-07 63.2 72 55.6
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.0e-07 63.2 72 55.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.3e-07 62.8 43 72.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.3e-07 62.8 40 77.5
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.3e-07 62.8 43 76.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.3e-07 62.8 58 62.1
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.3e-07 62.8 43 69.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.3e-07 62.8 43 74.4
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-07 62.4 43 76.7
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 2.3e-07 62.0 43 74.4
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-07 61.6 43 72.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-07 61.6 43 72.1
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-07 61.6 43 72.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-07 61.6 43 72.1
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.0e-07 61.6 43 72.1
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 3.0e-07 61.6 43 72.1
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.9e-07 61.2 43 72.1
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 3.9e-07 61.2 43 69.8
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.9e-07 61.2 43 74.4
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 3.9e-07 61.2 43 72.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 3.9e-07 61.2 43 69.8
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.9e-07 61.2 43 72.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.9e-07 61.2 58 60.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 3.9e-07 61.2 39 79.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 69.8
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 69.8
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 72.1
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 72.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 5.1e-07 60.8 42 64.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.1e-07 60.8 43 74.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 74.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 69.8
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 5.1e-07 60.8 43 69.8
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 6.6e-07 60.5 43 67.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 6.6e-07 60.5 43 74.4
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 6.6e-07 60.5 43 74.4
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 6.6e-07 60.5 43 69.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 6.6e-07 60.5 43 74.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 8.6e-07 60.1 72 52.8
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.6e-07 60.1 43 69.8
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 8.6e-07 60.1 43 69.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.1e-06 59.7 43 72.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.1e-06 59.7 43 69.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-06 59.7 43 72.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-06 59.7 43 72.1
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.1e-06 59.7 39 74.4
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.1e-06 59.7 42 73.8
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-06 59.7 40 77.5
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.1e-06 59.7 43 74.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.5e-06 59.3 39 76.9
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.5e-06 59.3 43 65.1
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.5e-06 59.3 43 74.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.5e-06 58.5 73 47.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 3.3e-06 58.2 39 74.4
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.3e-06 58.2 43 69.8
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 4.3e-06 57.8 49 65.3
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.3e-06 57.8 42 71.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.3e-06 57.8 42 66.7
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 5.6e-06 57.4 43 67.4
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.6e-06 57.4 43 69.8
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 7.3e-06 57.0 43 69.8
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 7.3e-06 57.0 43 67.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 7.3e-06 57.0 40 67.5
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.3e-06 57.0 43 69.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 9.5e-06 56.6 72 51.4
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 9.5e-06 56.6 72 52.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 9.5e-06 56.6 44 65.9


User provided reference genes

Program Settings