Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 6.9e-134 480.7 255 100.0
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 4.4e-104 381.7 238 84.9
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 8.2e-95 350.9 225 84.4
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.3e-92 343.6 224 82.1
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.8e-89 333.2 214 80.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 5.4e-78 295.0 167 90.4
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.9e-76 289.3 221 72.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.4e-72 275.8 160 85.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.7e-72 275.0 160 85.6
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.3e-71 273.9 160 85.0
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-71 273.5 160 85.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.7e-71 272.3 160 84.4
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.9e-71 271.9 160 85.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.2e-70 269.2 160 83.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.1e-70 268.9 160 84.4
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.4e-70 268.5 149 89.3
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-69 267.3 149 87.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.0e-69 266.5 160 81.9
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 4.7e-66 255.4 149 84.6
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 2.6e-64 249.6 149 81.2
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 4.4e-64 248.8 160 77.5
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 5.8e-64 248.4 149 81.2
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.7e-63 246.9 160 75.0
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.2e-63 246.5 160 75.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.2e-63 246.5 160 75.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.2e-63 246.5 160 76.9
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.2e-63 246.5 160 75.6
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-63 246.1 149 78.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.7e-63 245.7 161 73.9
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.7e-63 245.7 149 79.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.7e-63 245.7 149 80.5
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.7e-63 245.7 160 76.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.3e-63 244.6 149 79.2
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 8.3e-63 244.6 149 79.2
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 8.3e-63 244.6 149 81.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 8.3e-63 244.6 149 79.9
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.1e-62 244.2 149 81.9
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.4e-62 243.8 145 84.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.9e-62 243.4 166 72.9
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.4e-62 243.0 160 74.4
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 3.2e-62 242.7 137 85.4
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 4.1e-62 242.3 149 77.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.4e-62 241.9 149 78.5
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.0e-62 241.5 161 73.3
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 9.2e-62 241.1 149 77.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.2e-62 241.1 161 73.3
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 9.2e-62 241.1 149 77.9
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.2e-61 240.7 149 77.2
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-61 240.7 149 77.2
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-61 240.7 149 77.2
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.6e-61 240.4 149 76.5
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.6e-61 240.4 166 68.7
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.0e-61 240.0 167 71.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.7e-61 239.6 166 71.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.7e-61 239.6 160 73.8
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.7e-61 239.6 166 71.1
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.7e-61 239.6 166 71.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.7e-61 239.6 149 75.8
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.7e-61 239.6 148 77.7
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 3.5e-61 239.2 149 76.5
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 3.5e-61 239.2 149 77.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 4.6e-61 238.8 137 82.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 4.6e-61 238.8 149 77.9
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.6e-61 238.8 160 74.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 6.0e-61 238.4 149 75.2
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 6.0e-61 238.4 160 73.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 7.8e-61 238.0 149 77.9
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.0e-60 237.7 149 76.5
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.0e-60 236.1 170 67.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.0e-60 236.1 149 74.5
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 3.9e-60 235.7 149 75.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 5.0e-60 235.3 137 81.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 5.0e-60 235.3 148 77.0
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 5.0e-60 235.3 161 81.4
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.0e-60 235.3 149 73.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 6.6e-60 235.0 166 66.9
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 6.6e-60 235.0 149 77.2
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 6.6e-60 235.0 149 75.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.6e-60 235.0 143 79.0
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.1e-59 234.2 149 74.5
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.9e-59 233.4 161 76.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.9e-59 233.4 149 74.5
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.5e-59 233.0 149 75.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.5e-59 233.0 149 74.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.5e-59 233.0 149 76.5
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.3e-59 232.6 149 74.5
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.3e-59 232.6 137 81.8
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.3e-59 232.3 152 73.7
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 4.3e-59 232.3 160 70.6
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.3e-59 232.3 148 75.7
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.3e-59 232.3 148 75.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 5.6e-59 231.9 149 75.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.6e-59 231.9 148 75.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 7.3e-59 231.5 163 70.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.1e-58 229.9 149 76.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.8e-58 229.6 136 80.9
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.2e-58 228.4 166 68.1
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.2e-58 228.4 166 68.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.1e-58 228.0 166 68.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.1e-58 228.0 166 68.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 8.1e-58 228.0 149 72.5
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 8.1e-58 228.0 137 81.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.8e-57 226.9 162 70.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.3e-57 226.5 137 81.8
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.1e-57 226.1 125 90.4
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.1e-57 226.1 183 63.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 4.0e-57 225.7 137 79.6
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 5.2e-57 225.3 177 64.4
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.8e-57 224.9 189 61.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.0e-56 223.4 137 75.2
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 5.8e-56 221.9 135 77.0
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.3e-55 220.7 137 75.9
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.7e-55 220.3 133 79.7
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.9e-55 219.5 149 75.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.7e-55 219.2 158 65.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-53 214.2 177 65.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.7e-53 213.0 137 75.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 7.8e-53 211.5 194 58.2
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 7.8e-53 211.5 166 64.5
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.0e-52 211.1 137 73.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-51 206.8 156 67.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 7.3e-51 204.9 137 70.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.6e-50 203.8 126 76.2
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.1e-50 203.4 191 56.5
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.1e-49 201.1 145 66.2
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 5.8e-48 195.3 124 75.0
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 7.1e-46 188.3 112 76.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.3e-44 183.3 137 64.2
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.5e-43 179.9 123 69.1
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.5e-43 179.9 104 86.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 9.6e-43 177.9 104 83.7
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-42 177.2 104 83.7
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-42 176.8 104 82.7
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-42 176.8 104 82.7
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 4.7e-42 175.6 104 81.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-41 174.1 106 80.2
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.1e-41 172.9 149 62.4
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.8e-41 171.8 104 83.7
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.8e-41 171.8 130 68.5
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 5.8e-40 168.7 104 81.7
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.4e-38 164.1 117 65.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.4e-38 163.3 97 82.5
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-37 161.0 104 76.9
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 6.6e-36 155.2 90 83.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 2.2e-31 140.2 83 84.3
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.9e-31 139.0 90 71.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.3e-30 134.8 82 82.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-29 133.7 77 87.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.1e-29 133.7 106 61.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.1e-25 119.8 74 81.1
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.1e-25 119.8 73 83.6
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 9.0e-25 118.2 81 67.9
BolC2t06088H Brassica oleracea HOM05D011718 ORTHO05D013955 7.6e-24 115.2 66 89.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 6.4e-23 112.1 102 57.8
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-22 110.9 88 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 7.1e-22 108.6 81 63.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.3e-22 108.2 64 84.4
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-19 101.3 76 71.1
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.4e-17 93.6 118 39.8
BcaC06g32043 Brassica carinata HOM05D011718 ORTHO05D013955 9.0e-17 91.7 61 75.4
BolC9t60087H Brassica oleracea HOM05D011718 ORTHO05D013955 9.0e-17 91.7 61 75.4
A03p01070 Brassica napus HOM05D011718 ORTHO05D013955 1.2e-16 91.3 58 72.4
BolC3t12696H Brassica oleracea HOM05D011718 ORTHO05D013955 1.2e-16 91.3 58 72.4
C03p01380 Brassica napus HOM05D011718 ORTHO05D013955 1.5e-16 90.9 102 50.0
BolC9t60088H Brassica oleracea HOM05D011718 ORTHO05D013955 3.4e-16 89.7 72 68.1
BraA03t09489Z Brassica rapa HOM05D011718 ORTHO05D013955 3.4e-16 89.7 58 72.4
C09p73560 Brassica napus HOM05D011718 ORTHO05D013955 4.5e-16 89.4 61 75.4
A10p32720 Brassica napus HOM05D011718 ORTHO05D013955 2.2e-15 87.0 72 66.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.9e-15 85.9 64 67.2
CARHR210140 Cardamine hirsuta HOM05D011718 ORTHO05D013955 6.5e-15 85.5 58 72.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.4e-14 84.3 114 39.5
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-13 80.1 108 50.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 6.0e-13 79.0 49 77.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 6.0e-13 79.0 49 77.6
Carub.0006s0200 Capsella rubella HOM05D011718 ORTHO05D013955 1.0e-12 78.2 60 70.0
AL6G12500 Arabidopsis lyrata HOM05D011718 ORTHO05D013955 3.9e-12 76.3 60 66.7
AT5G03210 Arabidopsis thaliana HOM05D011718 ORTHO05D013955 2.5e-11 73.6 58 65.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.7e-10 69.7 103 35.0
Aa31LG1G21880 Aethionema arabicum HOM05D011718 ORTHO05D013955 1.3e-07 61.2 53 67.9
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.2e-06 56.2 33 69.7


User provided reference genes

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