Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p51410 Brassica napus HOM05D000822 ORTHO05D103064 1.5e-26 122.1 60 100.0
C01p51140 Brassica napus HOM05D000822 ORTHO05D102647 1.4e-24 115.5 56 100.0
BcaC09g48328 Brassica carinata HOM05D000822 ORTHO05D014097 3.5e-12 74.3 43 83.7
BcaC09g48349 Brassica carinata HOM05D000822 ORTHO05D014097 3.5e-12 74.3 43 83.7
C01p51080 Brassica napus HOM05D000822 ORTHO05D002021 3.5e-12 74.3 43 83.7
BolC1t05071H Brassica oleracea HOM05D000822 ORTHO05D016815 3.5e-12 74.3 43 83.7
BolC1t05069H Brassica oleracea HOM05D000822 ORTHO05D016815 7.8e-12 73.2 43 81.4
BcaC09g48320 Brassica carinata HOM05D000822 ORTHO05D002021 1.0e-11 72.8 43 81.4
C01p51120 Brassica napus HOM05D000822 ORTHO05D019965 1.0e-11 72.8 43 81.4
C01p51450 Brassica napus HOM05D000822 ORTHO05D019965 1.0e-11 72.8 43 81.4
BolC1t05085H Brassica oleracea HOM05D000822 ORTHO05D016815 1.0e-11 72.8 43 81.4
BolC1t05093H Brassica oleracea HOM05D000822 ORTHO05D016815 1.0e-11 72.8 43 81.4
AL1G26820 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 1.6e-09 65.5 43 72.1
AL7G45360 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 1.6e-09 65.5 43 72.1
AT1G14790 Arabidopsis thaliana HOM05D000822 ORTHO05D002021 1.6e-09 65.5 43 72.1
BcaB02g06549 Brassica carinata HOM05D000822 ORTHO05D002021 4.7e-09 63.9 43 72.1
Sp1g13230 Schrenkiella parvula HOM05D000822 ORTHO05D002021 4.7e-09 63.9 43 72.1
CANSAT78G0909 Cannabis sativa HOM05D000822 ORTHO05D002021 8.1e-09 63.2 43 69.8
Carub.0001s1459 Capsella rubella HOM05D000822 ORTHO05D002021 1.1e-08 62.8 43 67.4
CARHR015330 Cardamine hirsuta HOM05D000822 ORTHO05D002021 1.1e-08 62.8 43 69.8
Thhalv10006629m.g Eutrema salsugineum HOM05D000822 ORTHO05D002021 1.8e-08 62.0 43 69.8
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 5.2e-08 60.5 43 67.4
BcaC05g25400 Brassica carinata HOM05D000822 ORTHO05D002021 5.2e-08 60.5 43 67.4
BolC5t30018H Brassica oleracea HOM05D000822 ORTHO05D002021 5.2e-08 60.5 43 67.4
A06p10850 Brassica napus HOM05D000822 ORTHO05D002021 6.8e-08 60.1 43 67.4
BraA06t24263Z Brassica rapa HOM05D000822 ORTHO05D002021 6.8e-08 60.1 43 67.4
PSO357G0171 Papaver somniferum HOM05D000822 ORTHO05D002021 8.9e-08 59.7 43 65.1
C05p12740 Brassica napus HOM05D000822 ORTHO05D002021 1.5e-07 58.9 43 65.1
Rhsim09G0088600 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.5e-07 58.9 43 67.4
Sed0009745 Sechium edule HOM05D000822 ORTHO05D002021 3.4e-07 57.8 43 62.8
Sed0015093 Sechium edule HOM05D000822 ORTHO05D002021 3.4e-07 57.8 43 62.8
ClCG07G005340 Citrullus lanatus HOM05D000822 ORTHO05D002021 4.4e-07 57.4 43 60.5
CAN.G58.22 Capsicum annuum HOM05D000822 ORTHO05D002021 5.8e-07 57.0 36 75.0
CiPaw.06G053900 Carya illinoinensis HOM05D000822 ORTHO05D002021 5.8e-07 57.0 43 60.5
ClCG01G006600 Citrullus lanatus HOM05D000822 ORTHO05D002021 5.8e-07 57.0 43 62.8
QL03p037368 Quercus lobata HOM05D000822 ORTHO05D002021 5.8e-07 57.0 43 62.8
THA.LOC104805089 Tarenaya hassleriana HOM05D000822 ORTHO05D002021 5.8e-07 57.0 43 62.8
GSVIVG01011643001 Vitis vinifera HOM05D000822 ORTHO05D002021 5.8e-07 57.0 36 77.8
Aa31LG1G300 Aethionema arabicum HOM05D000822 ORTHO05D002021 7.6e-07 56.6 36 75.0
Duzib248G0041 Durio zibethinus HOM05D000822 ORTHO05D002021 7.6e-07 56.6 43 60.5
Eucgr.B02678 Eucalyptus grandis HOM05D000822 ORTHO05D002021 7.6e-07 56.6 36 75.0
Thecc.02G309600 Theobroma cacao HOM05D000822 ORTHO05D002021 7.6e-07 56.6 43 58.1
TPR.G36855 Trifolium pratense HOM05D000822 ORTHO05D002021 7.6e-07 56.6 43 58.1
arahy.Tifrunner.gnm1.ann1.T3UAXS Arachis hypogaea HOM05D000822 ORTHO05D002021 9.9e-07 56.2 35 77.1
Dinv18911 Davidia involucrata HOM05D000822 ORTHO05D002021 9.9e-07 56.2 38 68.4
Eucgr.B02681 Eucalyptus grandis HOM05D000822 ORTHO05D002021 9.9e-07 56.2 43 62.8
Gohir.A04G144100 Gossypium hirsutum HOM05D000822 ORTHO05D002021 9.9e-07 56.2 43 58.1
Gohir.A09G026750 Gossypium hirsutum HOM05D000822 ORTHO05D002021 9.9e-07 56.2 43 58.1
Lj2g0008190 Lotus japonicus HOM05D000822 ORTHO05D002021 9.9e-07 56.2 36 69.4
Oeu044001.1 Olea europaea HOM05D000822 ORTHO05D002021 9.9e-07 56.2 36 72.2
Actinidia36616 Actinidia chinensis HOM05D000822 ORTHO05D002021 1.3e-06 55.8 43 60.5
arahy.Tifrunner.gnm1.ann1.MIQ9L3 Arachis hypogaea HOM05D000822 ORTHO05D002021 1.3e-06 55.8 35 74.3
MSTRG.768 Avicennia marina HOM05D000822 ORTHO05D002021 1.3e-06 55.8 43 62.8
Potri.008G136100 Populus trichocarpa HOM05D000822 ORTHO05D002021 1.3e-06 55.8 43 60.5
unitig_22.g6489 Utricularia gibba HOM05D000822 ORTHO05D002021 1.3e-06 55.8 43 58.1
Lj2g0001089 Lotus japonicus HOM05D000822 ORTHO05D002021 1.7e-06 55.5 36 69.4
Oeu013819.1 Olea europaea HOM05D000822 ORTHO05D002021 1.7e-06 55.5 48 58.3
RcHm_v2.0_Chr4g0442711 Rosa chinensis HOM05D000822 ORTHO05D002021 1.7e-06 55.5 36 72.2
Hund15690 Selenicereus undatus HOM05D000822 ORTHO05D002021 1.7e-06 55.5 43 65.1
CANSAT78G2101 Cannabis sativa HOM05D000822 ORTHO05D002021 2.2e-06 55.1 43 58.1
CiPaw.03G222500 Carya illinoinensis HOM05D000822 ORTHO05D002021 2.2e-06 55.1 36 72.2
CiPaw.06G054100 Carya illinoinensis HOM05D000822 ORTHO05D002021 2.2e-06 55.1 43 60.5
Duzib251G0784 Durio zibethinus HOM05D000822 ORTHO05D002021 2.2e-06 55.1 43 60.5
Glyma.02G086100 Glycine max HOM05D000822 ORTHO05D002021 2.2e-06 55.1 46 60.9
HanXRQChr08g0224271 Helianthus annuus HOM05D000822 ORTHO05D002021 2.2e-06 55.1 43 62.8
Manes.15G135600 Manihot esculenta HOM05D000822 ORTHO05D002021 2.2e-06 55.1 36 72.2
QL03p036375 Quercus lobata HOM05D000822 ORTHO05D002021 2.2e-06 55.1 43 60.5
QL12p003093 Quercus lobata HOM05D000822 ORTHO05D002021 2.2e-06 55.1 43 60.5
arahy.Tifrunner.gnm1.ann1.92BDQ3 Arachis hypogaea HOM05D000822 ORTHO05D002021 2.9e-06 54.7 35 77.1
arahy.Tifrunner.gnm1.ann1.TJ3454 Arachis hypogaea HOM05D000822 ORTHO05D002021 2.9e-06 54.7 35 77.1
AUR62030555 Chenopodium quinoa HOM05D000822 ORTHO05D002021 2.9e-06 54.7 43 58.1
MELO3C005257.2 Cucumis melo HOM05D000822 ORTHO05D002021 2.9e-06 54.7 36 72.2
Eucgr.G02090 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.9e-06 54.7 39 66.7
Eucgr.G02092 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.9e-06 54.7 39 66.7
MBI19_g36754_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 2.9e-06 54.7 36 75.0
RcHm_v2.0_Chr2g0166231 Rosa chinensis HOM05D000822 ORTHO05D002021 2.9e-06 54.7 36 69.4
GSVIVG01011645001 Vitis vinifera HOM05D000822 ORTHO05D002021 2.9e-06 54.7 35 74.3
Eucgr.L02623 Eucalyptus grandis HOM05D000822 ORTHO05D002021 3.7e-06 54.3 36 72.2
Gorai.012G183900 Gossypium raimondii HOM05D000822 ORTHO05D002021 3.7e-06 54.3 43 58.1
MBI19_g26463_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 3.7e-06 54.3 36 72.2
TPR.G36919 Trifolium pratense HOM05D000822 ORTHO05D002021 3.7e-06 54.3 36 69.4
Actinidia12401 Actinidia chinensis HOM05D000822 ORTHO05D002021 4.9e-06 53.9 35 74.3
Cfa015040 Carpinus fangiana HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 66.7
CiPaw.06G054400 Carya illinoinensis HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 75.0
Duzib251G0567 Durio zibethinus HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 72.2
Glyma.07G171400 Glycine max HOM05D000822 ORTHO05D002021 4.9e-06 53.9 43 58.1
Gohir.A13G027000 Gossypium hirsutum HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 72.2
Gohir.D13G025800 Gossypium hirsutum HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 72.2
Gorai.013G029000 Gossypium raimondii HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 72.2
MBI19_g26461_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 72.2
Oeu006130.1 Olea europaea HOM05D000822 ORTHO05D002021 4.9e-06 53.9 35 74.3
PSO832G2266 Papaver somniferum HOM05D000822 ORTHO05D002021 4.9e-06 53.9 38 73.7
Peaxi162Scf00937g00211 Petunia axillaris HOM05D000822 ORTHO05D002021 4.9e-06 53.9 36 72.2
FvH4_4g33391 Fragaria vesca HOM05D000822 ORTHO05D002021 6.4e-06 53.5 43 60.5
FAN07G1132 Fragaria x ananassa HOM05D000822 ORTHO05D002021 6.4e-06 53.5 43 60.5
FAN07G1419 Fragaria x ananassa HOM05D000822 ORTHO05D002021 6.4e-06 53.5 43 60.5
FAN12G1113 Fragaria x ananassa HOM05D000822 ORTHO05D002021 6.4e-06 53.5 43 60.5
Phvul.003G016800 Phaseolus vulgaris HOM05D000822 ORTHO05D002021 6.4e-06 53.5 43 53.5
Sed0015641 Sechium edule HOM05D000822 ORTHO05D002021 6.4e-06 53.5 43 58.1
PGSC0003DMG400031269 Solanum tuberosum HOM05D000822 ORTHO05D002021 6.4e-06 53.5 36 69.4
CiPaw.06G054300 Carya illinoinensis HOM05D000822 ORTHO05D002021 8.4e-06 53.1 43 58.1
ClCG07G005370 Citrullus lanatus HOM05D000822 ORTHO05D002021 8.4e-06 53.1 38 65.8
Cc11_g06950 Coffea canephora HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 66.7
CsaV3_5G027970 Cucumis sativus L. HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 69.4
CsaV3_5G028230 Cucumis sativus L. HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 69.4
Dinv26358 Davidia involucrata HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 69.4
Gohir.D04G188400 Gossypium hirsutum HOM05D000822 ORTHO05D002021 8.4e-06 53.1 43 58.1
Lalb_Chr10g0095661 Lupinus albus HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 69.4
MBI19_g09391_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 72.2
MBI19_g33823_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 72.2
MBI19_g36760_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 72.2
MBI19_g47006_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 72.2
MD16G1017500 Malus domestica HOM05D000822 ORTHO05D002021 8.4e-06 53.1 43 62.8
SalBow2G2887 Salvia bowleyana HOM05D000822 ORTHO05D002021 8.4e-06 53.1 36 69.4


User provided reference genes

Program Settings