Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p51020 Brassica napus HOM05D000822 ORTHO05D013508 3.5e-61 238.0 114 100.0
BolC1t05066H Brassica oleracea HOM05D000822 ORTHO05D013508 1.7e-47 192.6 106 88.7
C01p51350 Brassica napus HOM05D000822 ORTHO05D013508 4.1e-46 188.0 106 85.8
BolC1t05090H Brassica oleracea HOM05D000822 ORTHO05D013508 2.7e-45 185.3 106 85.8
C01p51420 Brassica napus HOM05D000822 ORTHO05D013508 6.0e-45 184.1 106 85.8
C01p51090 Brassica napus HOM05D000822 ORTHO05D013508 1.4e-38 162.9 93 84.9
BolC1t05072H Brassica oleracea HOM05D000822 ORTHO05D013508 1.4e-38 162.9 93 84.9
C01p51270 Brassica napus HOM05D000822 ORTHO05D013508 1.9e-30 136.0 82 80.5
BcaC09g48323 Brassica carinata HOM05D000822 ORTHO05D014097 4.7e-26 121.3 69 81.2
C01p51400 Brassica napus HOM05D000822 ORTHO05D014097 4.7e-26 121.3 69 81.2
BcaC09g48349 Brassica carinata HOM05D000822 ORTHO05D014097 4.2e-22 108.2 94 62.8
BcaC09g48333 Brassica carinata HOM05D000822 ORTHO05D014097 1.6e-21 106.3 84 63.1
BcaC09g48320 Brassica carinata HOM05D000822 ORTHO05D002021 4.8e-18 94.7 69 68.1
AT1G14790 Arabidopsis thaliana HOM05D000822 ORTHO05D002021 3.0e-12 75.5 87 44.8
Thhalv10006629m.g Eutrema salsugineum HOM05D000822 ORTHO05D002021 6.7e-12 74.3 103 40.8
AL1G26820 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 2.5e-11 72.4 88 44.3
AL7G45360 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 2.5e-11 72.4 88 44.3
CARHR015330 Cardamine hirsuta HOM05D000822 ORTHO05D002021 2.5e-11 72.4 88 42.0
CSS0036414 Camellia sinensis var. sinensis HOM05D000822 ORTHO05D002021 4.3e-11 71.6 87 41.4
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 2.1e-10 69.3 88 42.0
BcaC05g25400 Brassica carinata HOM05D000822 ORTHO05D002021 2.1e-10 69.3 88 42.0
BolC5t30018H Brassica oleracea HOM05D000822 ORTHO05D002021 2.1e-10 69.3 88 42.0
AUR62030555 Chenopodium quinoa HOM05D000822 ORTHO05D002021 2.1e-10 69.3 85 43.5
A06p10850 Brassica napus HOM05D000822 ORTHO05D002021 2.8e-10 68.9 88 42.0
C05p12740 Brassica napus HOM05D000822 ORTHO05D002021 2.8e-10 68.9 88 42.0
BraA06t24263Z Brassica rapa HOM05D000822 ORTHO05D002021 2.8e-10 68.9 88 42.0
AUR62018332 Chenopodium quinoa HOM05D000822 ORTHO05D002021 2.8e-10 68.9 85 43.5
THA.LOC104805089 Tarenaya hassleriana HOM05D000822 ORTHO05D002021 2.8e-10 68.9 84 40.5
Oeu013821.1 Olea europaea HOM05D000822 ORTHO05D002021 4.8e-10 68.2 87 40.2
Sc10g0004080 Simmondsia chinensis HOM05D000822 ORTHO05D002021 4.8e-10 68.2 85 41.2
Migut.L01176 Erythranthe guttata HOM05D000822 ORTHO05D002021 8.1e-10 67.4 88 39.8
Aa31LG1G300 Aethionema arabicum HOM05D000822 ORTHO05D002021 1.1e-09 67.0 103 37.9
COL.COLO4_27641 Corchorus olitorius HOM05D000822 ORTHO05D002021 1.1e-09 67.0 85 40.0
Sed0005964 Sechium edule HOM05D000822 ORTHO05D002021 1.4e-09 66.6 88 39.8
ClCG07G005370 Citrullus lanatus HOM05D000822 ORTHO05D002021 1.8e-09 66.2 88 39.8
EL10Ac2g02895 Beta vulgaris HOM05D000822 ORTHO05D002021 2.4e-09 65.9 85 40.0
EL10Ac2g02898 Beta vulgaris HOM05D000822 ORTHO05D002021 2.4e-09 65.9 85 40.0
Oeu044001.1 Olea europaea HOM05D000822 ORTHO05D002021 2.4e-09 65.9 86 39.5
SGA_v2.0_scaffold16G07805 Striga asiatica HOM05D000822 ORTHO05D002021 2.4e-09 65.9 81 43.2
Ah.06g191500 Amaranthus hybridus HOM05D000822 ORTHO05D002021 3.1e-09 65.5 85 38.8
MSTRG.768 Avicennia marina HOM05D000822 ORTHO05D002021 3.1e-09 65.5 91 38.5
Hund15690 Selenicereus undatus HOM05D000822 ORTHO05D002021 3.1e-09 65.5 85 38.8
Oeu006130.1 Olea europaea HOM05D000822 ORTHO05D002021 5.3e-09 64.7 89 42.7
RcHm_v2.0_Chr4g0442701 Rosa chinensis HOM05D000822 ORTHO05D002021 5.3e-09 64.7 85 42.4
BcaB02g06549 Brassica carinata HOM05D000822 ORTHO05D002021 9.0e-09 63.9 88 40.9
Cc11_g06950 Coffea canephora HOM05D000822 ORTHO05D002021 9.0e-09 63.9 88 38.6
Duzib248G0041 Durio zibethinus HOM05D000822 ORTHO05D002021 1.2e-08 63.5 81 39.5
Peaxi162Scf00937g00211 Petunia axillaris HOM05D000822 ORTHO05D002021 1.2e-08 63.5 87 39.1
Ca_12533_v3 Cicer arietinum L. HOM05D000822 ORTHO05D002021 1.5e-08 63.2 105 35.2
PSO063G0843 Papaver somniferum HOM05D000822 ORTHO05D002021 1.5e-08 63.2 101 40.6
unitig_22.g6489 Utricularia gibba HOM05D000822 ORTHO05D002021 1.5e-08 63.2 88 37.5
Cc11_g06970 Coffea canephora HOM05D000822 ORTHO05D002021 2.0e-08 62.8 87 36.8
Gohir.D13G025800 Gossypium hirsutum HOM05D000822 ORTHO05D002021 2.0e-08 62.8 92 40.2
Gorai.013G029000 Gossypium raimondii HOM05D000822 ORTHO05D002021 2.0e-08 62.8 92 40.2
Nitab4.5_0009221g0010 Nicotiana tabacum HOM05D000822 ORTHO05D002021 2.0e-08 62.8 87 36.8
SalBow2G0390 Salvia bowleyana HOM05D000822 ORTHO05D002021 2.0e-08 62.8 85 37.6
SalBow2G2047 Salvia bowleyana HOM05D000822 ORTHO05D002021 2.0e-08 62.8 85 37.6
SalBow2G3446 Salvia bowleyana HOM05D000822 ORTHO05D002021 2.0e-08 62.8 85 37.6
TAR371G0134 Trochodendron aralioides HOM05D000822 ORTHO05D002021 2.0e-08 62.8 87 37.9
Nitab4.5_0000654g0010 Nicotiana tabacum HOM05D000822 ORTHO05D002021 2.6e-08 62.4 87 37.9
Aqoxy3G04072 Aquilegia oxysepala HOM05D000822 ORTHO05D002021 3.4e-08 62.0 98 35.7
Duzib251G0826 Durio zibethinus HOM05D000822 ORTHO05D002021 3.4e-08 62.0 86 38.4
Eucgr.B02678 Eucalyptus grandis HOM05D000822 ORTHO05D002021 3.4e-08 62.0 107 36.4
FvH4_4g33391 Fragaria vesca HOM05D000822 ORTHO05D002021 3.4e-08 62.0 85 40.0
Sopen05g003390 Solanum pennellii HOM05D000822 ORTHO05D002021 3.4e-08 62.0 87 39.1
TAR629G3417 Trochodendron aralioides HOM05D000822 ORTHO05D002021 3.4e-08 62.0 87 39.1
Actinidia36616 Actinidia chinensis HOM05D000822 ORTHO05D002021 4.5e-08 61.6 79 40.5
FAN12G1113 Fragaria x ananassa HOM05D000822 ORTHO05D002021 4.5e-08 61.6 85 38.8
PSO832G2266 Papaver somniferum HOM05D000822 ORTHO05D002021 4.5e-08 61.6 87 37.9
Thecc.02G309500 Theobroma cacao HOM05D000822 ORTHO05D002021 4.5e-08 61.6 79 40.5
TWI53G2103 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 4.5e-08 61.6 80 38.8
Gohir.A13G027000 Gossypium hirsutum HOM05D000822 ORTHO05D002021 5.8e-08 61.2 87 41.4
Solyc05g007510.4 Solanum lycopersicum HOM05D000822 ORTHO05D002021 5.8e-08 61.2 87 37.9
PGSC0003DMG400031261 Solanum tuberosum HOM05D000822 ORTHO05D002021 5.8e-08 61.2 87 39.1
PGSC0003DMG400031269 Solanum tuberosum HOM05D000822 ORTHO05D002021 5.8e-08 61.2 87 39.1
TPR.G36855 Trifolium pratense HOM05D000822 ORTHO05D002021 5.8e-08 61.2 83 37.3
GSVIVG01011645001 Vitis vinifera HOM05D000822 ORTHO05D002021 5.8e-08 61.2 86 37.2
Dinv18911 Davidia involucrata HOM05D000822 ORTHO05D002021 7.6e-08 60.8 87 36.8
Dinv26358 Davidia involucrata HOM05D000822 ORTHO05D002021 7.6e-08 60.8 85 36.5
Lj6A529T68 Lonicera japonica HOM05D000822 ORTHO05D002021 7.6e-08 60.8 85 40.0
Lj6A531T23 Lonicera japonica HOM05D000822 ORTHO05D002021 7.6e-08 60.8 85 40.0
MD13G1019300 Malus domestica HOM05D000822 ORTHO05D002021 7.6e-08 60.8 85 40.0
PGR142G2590 Punica granatum HOM05D000822 ORTHO05D002021 7.6e-08 60.8 93 38.7
TWI53G0228 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 7.6e-08 60.8 85 37.6
Cc11_g06960 Coffea canephora HOM05D000822 ORTHO05D002021 9.9e-08 60.5 88 36.4
MD13G1041300 Malus domestica HOM05D000822 ORTHO05D002021 9.9e-08 60.5 85 40.0
CANSAT78G2138 Cannabis sativa HOM05D000822 ORTHO05D002021 1.3e-07 60.1 80 37.5
FAN07G1419 Fragaria x ananassa HOM05D000822 ORTHO05D002021 1.3e-07 60.1 85 38.8
QL03p036529 Quercus lobata HOM05D000822 ORTHO05D002021 1.3e-07 60.1 87 36.8
SalBow2G2887 Salvia bowleyana HOM05D000822 ORTHO05D002021 1.3e-07 60.1 82 36.6
ECA233G5534 Erigeron canadensis HOM05D000822 ORTHO05D002021 1.7e-07 59.7 86 36.0
Gohir.A04G144100 Gossypium hirsutum HOM05D000822 ORTHO05D002021 1.7e-07 59.7 106 36.8
Cpa.g.sc2.183 Carica papaya HOM05D000822 ORTHO05D002021 2.2e-07 59.3 85 37.6
Dinv18908 Davidia involucrata HOM05D000822 ORTHO05D002021 2.2e-07 59.3 86 37.2
Dinv18910 Davidia involucrata HOM05D000822 ORTHO05D002021 2.2e-07 59.3 87 43.7
Duzib251G0241 Durio zibethinus HOM05D000822 ORTHO05D002021 2.2e-07 59.3 85 34.1
Lj2g0001685 Lotus japonicus HOM05D000822 ORTHO05D002021 2.2e-07 59.3 87 35.6
PGR142G0740 Punica granatum HOM05D000822 ORTHO05D002021 2.9e-07 58.9 93 35.5
Sed0005466 Sechium edule HOM05D000822 ORTHO05D002021 2.9e-07 58.9 76 42.1
Sed0009745 Sechium edule HOM05D000822 ORTHO05D002021 2.9e-07 58.9 76 42.1
ClCG01G006600 Citrullus lanatus HOM05D000822 ORTHO05D002021 3.8e-07 58.5 83 37.3
Gohir.D04G188400 Gossypium hirsutum HOM05D000822 ORTHO05D002021 3.8e-07 58.5 106 36.8
Lj6A532T50 Lonicera japonica HOM05D000822 ORTHO05D002021 3.8e-07 58.5 85 40.0
Lj6A736G83 Lonicera japonica HOM05D000822 ORTHO05D002021 3.8e-07 58.5 85 36.5
Lj6C529T7 Lonicera japonica HOM05D000822 ORTHO05D002021 3.8e-07 58.5 87 37.9
RcHm_v2.0_Chr4g0442681 Rosa chinensis HOM05D000822 ORTHO05D002021 3.8e-07 58.5 77 42.9
Cc11_g06940 Coffea canephora HOM05D000822 ORTHO05D002021 4.9e-07 58.2 80 37.5
COL.COLO4_27640 Corchorus olitorius HOM05D000822 ORTHO05D002021 4.9e-07 58.2 83 38.6
Gohir.A09G026750 Gossypium hirsutum HOM05D000822 ORTHO05D002021 4.9e-07 58.2 106 35.8
Gohir.D04G188700 Gossypium hirsutum HOM05D000822 ORTHO05D002021 4.9e-07 58.2 105 35.2
Hma1.2p1_0853F.1_g228680 Hydrangea macrophylla HOM05D000822 ORTHO05D002021 4.9e-07 58.2 87 37.9
Manes.15G135600 Manihot esculenta HOM05D000822 ORTHO05D002021 4.9e-07 58.2 80 38.8
Nn3g18395 Nelumbo nucifera HOM05D000822 ORTHO05D002021 4.9e-07 58.2 81 39.5
Gorai.012G183900 Gossypium raimondii HOM05D000822 ORTHO05D002021 6.4e-07 57.8 78 42.3
Prupe.1G334500 Prunus persica HOM05D000822 ORTHO05D002021 6.4e-07 57.8 80 37.5
Thecc.02G309600 Theobroma cacao HOM05D000822 ORTHO05D002021 6.4e-07 57.8 103 35.0
TWI74G0257 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 6.4e-07 57.8 87 35.6
CAN.G58.22 Capsicum annuum HOM05D000822 ORTHO05D002021 8.4e-07 57.4 85 37.6
Glyma.02G086100 Glycine max HOM05D000822 ORTHO05D002021 8.4e-07 57.4 87 35.6
Lsat_1_v5_gn_8_35321 Lactuca sativa HOM05D000822 ORTHO05D002021 8.4e-07 57.4 87 35.6
Prupe.1G332600 Prunus persica HOM05D000822 ORTHO05D002021 8.4e-07 57.4 80 37.5
QL03p036637 Quercus lobata HOM05D000822 ORTHO05D002021 8.4e-07 57.4 87 36.8
Cpa.g.sc2.177 Carica papaya HOM05D000822 ORTHO05D002021 1.1e-06 57.0 87 34.5
Lj6C533T1 Lonicera japonica HOM05D000822 ORTHO05D002021 1.1e-06 57.0 85 37.6
HanXRQChr08g0224271 Helianthus annuus HOM05D000822 ORTHO05D002021 1.4e-06 56.6 88 37.5
Nn4g24416 Nelumbo nucifera HOM05D000822 ORTHO05D002021 1.4e-06 56.6 101 37.6
Duzib251G0784 Durio zibethinus HOM05D000822 ORTHO05D002021 1.9e-06 56.2 85 32.9
Lj6A529G69 Lonicera japonica HOM05D000822 ORTHO05D002021 1.9e-06 56.2 87 35.6
Actinidia12401 Actinidia chinensis HOM05D000822 ORTHO05D002021 2.4e-06 55.8 81 37.0
CiPaw.06G054100 Carya illinoinensis HOM05D000822 ORTHO05D002021 2.4e-06 55.8 101 35.6
Eucgr.B02681 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.4e-06 55.8 77 39.0
Eucgr.L02623 Eucalyptus grandis HOM05D000822 ORTHO05D002021 2.4e-06 55.8 77 39.0
Lalb_Chr10g0095661 Lupinus albus HOM05D000822 ORTHO05D002021 2.4e-06 55.8 87 36.8
MD16G1017600 Malus domestica HOM05D000822 ORTHO05D002021 2.4e-06 55.8 87 34.5
Medtr1g032590 Medicago truncatula HOM05D000822 ORTHO05D002021 2.4e-06 55.8 80 33.8
PSO357G0171 Papaver somniferum HOM05D000822 ORTHO05D002021 2.4e-06 55.8 98 31.6
PGR142G4183 Punica granatum HOM05D000822 ORTHO05D002021 2.4e-06 55.8 93 33.3
QL03p036345 Quercus lobata HOM05D000822 ORTHO05D002021 2.4e-06 55.8 87 34.5
QL12p003065 Quercus lobata HOM05D000822 ORTHO05D002021 2.4e-06 55.8 87 34.5
Lj6A528T46 Lonicera japonica HOM05D000822 ORTHO05D002021 3.2e-06 55.5 87 35.6
Psat6g051640 Pisum sativum HOM05D000822 ORTHO05D002021 3.2e-06 55.5 80 35.0
CiPaw.06G053700 Carya illinoinensis HOM05D000822 ORTHO05D002021 4.2e-06 55.1 85 36.5
HanXRQChr08g0223631 Helianthus annuus HOM05D000822 ORTHO05D002021 4.2e-06 55.1 87 34.5
Lj6A533T44 Lonicera japonica HOM05D000822 ORTHO05D002021 4.2e-06 55.1 85 36.5
QL12p003093 Quercus lobata HOM05D000822 ORTHO05D002021 4.2e-06 55.1 87 35.6
PGR142G0514 Punica granatum HOM05D000822 ORTHO05D002021 5.5e-06 54.7 93 33.3
Sabra08G0103900 Salix brachista HOM05D000822 ORTHO05D002021 5.5e-06 54.7 79 39.2
BcaC09g48344 Brassica carinata HOM05D000822 ORTHO05D016815 7.1e-06 54.3 30 83.3
CiPaw.06G053900 Carya illinoinensis HOM05D000822 ORTHO05D002021 7.1e-06 54.3 101 34.7
CiPaw.06G054400 Carya illinoinensis HOM05D000822 ORTHO05D002021 7.1e-06 54.3 75 38.7
ClCG01G006450 Citrullus lanatus HOM05D000822 ORTHO05D002021 7.1e-06 54.3 76 35.5
Duzib251G0567 Durio zibethinus HOM05D000822 ORTHO05D002021 7.1e-06 54.3 86 34.9
ECA232G0215 Erigeron canadensis HOM05D000822 ORTHO05D002021 7.1e-06 54.3 87 34.5
HanXRQChr08g0223651 Helianthus annuus HOM05D000822 ORTHO05D002021 7.1e-06 54.3 87 34.5
Lj6C736G19 Lonicera japonica HOM05D000822 ORTHO05D002021 7.1e-06 54.3 87 40.2
MD16G1017500 Malus domestica HOM05D000822 ORTHO05D002021 7.1e-06 54.3 87 35.6
Sp1g13230 Schrenkiella parvula HOM05D000822 ORTHO05D002021 7.1e-06 54.3 87 35.6
Sed0015093 Sechium edule HOM05D000822 ORTHO05D002021 7.1e-06 54.3 77 40.3
TAR629G0195 Trochodendron aralioides HOM05D000822 ORTHO05D002021 7.1e-06 54.3 89 37.1
Cfa021650 Carpinus fangiana HOM05D000822 ORTHO05D002021 9.3e-06 53.9 87 35.6
CiPaw.06G053800 Carya illinoinensis HOM05D000822 ORTHO05D002021 9.3e-06 53.9 87 35.6
MD13G1019400 Malus domestica HOM05D000822 ORTHO05D002021 9.3e-06 53.9 87 33.3
MD13G1041200 Malus domestica HOM05D000822 ORTHO05D002021 9.3e-06 53.9 87 33.3
Phvul.003G016600 Phaseolus vulgaris HOM05D000822 ORTHO05D002021 9.3e-06 53.9 109 34.9
VMungo0464G2119 Vigna mungo HOM05D000822 ORTHO05D002021 9.3e-06 53.9 99 34.3


User provided reference genes

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