Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p48230 Brassica napus HOM05D002997 ORTHO05D003021 7.7e-46 186.8 95 100.0
BcaC09g48586 Brassica carinata HOM05D002997 ORTHO05D003021 1.9e-36 155.6 111 76.6
Sp3g14420 Schrenkiella parvula HOM05D002997 ORTHO05D003021 6.1e-27 124.0 151 51.0
BraA05t22166Z Brassica rapa HOM05D002997 ORTHO05D003021 4.0e-26 121.3 153 51.0
C05p50410 Brassica napus HOM05D002997 ORTHO05D003021 8.8e-26 120.2 153 51.0
BcaC05g28914 Brassica carinata HOM05D002997 ORTHO05D003021 3.3e-25 118.2 153 50.3
BolC5t33788H Brassica oleracea HOM05D002997 ORTHO05D003021 3.3e-25 118.2 153 50.3
A05p33410 Brassica napus HOM05D002997 ORTHO05D003021 9.7e-25 116.7 153 49.7
BcaB06g25701 Brassica carinata HOM05D002997 ORTHO05D003021 1.3e-24 116.3 153 51.0
BolC1t04787H Brassica oleracea HOM05D002997 ORTHO05D003021 3.7e-24 114.8 60 96.7
Carub.0003s1580 Capsella rubella HOM05D002997 ORTHO05D003021 6.3e-24 114.0 152 48.0
AL3G28720 Arabidopsis lyrata HOM05D002997 ORTHO05D003021 4.1e-23 111.3 151 45.0
Thhalv10022394m.g Eutrema salsugineum HOM05D002997 ORTHO05D003021 1.2e-22 109.8 150 47.3
AT3G16070 Arabidopsis thaliana HOM05D002997 ORTHO05D003021 1.6e-22 109.4 151 45.7
CARHR091230 Cardamine hirsuta HOM05D002997 ORTHO05D003021 1.3e-21 106.3 150 46.7
BraA01t03861Z Brassica rapa HOM05D002997 ORTHO05D003021 1.0e-18 96.7 51 92.2
Aa31LG8G3220 Aethionema arabicum HOM05D002997 ORTHO05D003021 4.0e-18 94.7 149 42.3
A01p38040 Brassica napus HOM05D002997 ORTHO05D003021 1.4e-15 86.3 44 93.2
THA.LOC104810523 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 2.5e-12 75.5 80 55.0
FAN05G3934 Fragaria x ananassa HOM05D002997 ORTHO05D003021 6.8e-10 67.4 60 53.3
QL05p022592 Quercus lobata HOM05D002997 ORTHO05D003021 1.2e-09 66.6 74 45.9
FAN02G2191 Fragaria x ananassa HOM05D002997 ORTHO05D003021 1.5e-09 66.2 60 51.7
Medtr2g101980 Medicago truncatula HOM05D002997 ORTHO05D003021 1.5e-09 66.2 73 42.5
RcHm_v2.0_Chr2g0138311 Rosa chinensis HOM05D002997 ORTHO05D003021 2.0e-09 65.9 55 54.5
Ciclev10026471m.g Citrus clementina HOM05D002997 ORTHO05D003021 2.6e-09 65.5 84 42.9
CiPaw.01G237700 Carya illinoinensis HOM05D002997 ORTHO05D003021 4.4e-09 64.7 77 45.5
FvH4_6g31461 Fragaria vesca HOM05D002997 ORTHO05D003021 4.4e-09 64.7 52 55.8
FAN14G5360 Fragaria x ananassa HOM05D002997 ORTHO05D003021 4.4e-09 64.7 52 55.8
MD09G1210900 Malus domestica HOM05D002997 ORTHO05D003021 4.4e-09 64.7 79 39.2
Prupe.3G069200 Prunus persica HOM05D002997 ORTHO05D003021 4.4e-09 64.7 65 49.2
COL.COLO4_30400 Corchorus olitorius HOM05D001537 ORTHO05D008612 5.7e-09 64.3 52 53.8
Manes.04G125100 Manihot esculenta HOM05D002997 ORTHO05D003021 7.5e-09 63.9 49 61.2
Lalb_Chr14g0373331 Lupinus albus HOM05D002997 ORTHO05D003021 9.8e-09 63.5 79 45.6
VMungo1080G1010 Vigna mungo HOM05D002997 ORTHO05D003021 9.8e-09 63.5 67 44.8
Cfa002082 Carpinus fangiana HOM05D002997 ORTHO05D003021 1.3e-08 63.2 75 45.3
Haze_16397 Corylus avellana HOM05D002997 ORTHO05D003021 1.3e-08 63.2 80 45.0
Gohir.A05G131000 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.3e-08 63.2 50 56.0
Gohir.D05G130300 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.3e-08 63.2 50 56.0
Gorai.009G134100 Gossypium raimondii HOM05D002997 ORTHO05D003021 1.3e-08 63.2 50 56.0
Medtr0147s0050 Medicago truncatula HOM05D002997 ORTHO05D003021 1.3e-08 63.2 64 48.4
Thecc.06G090500 Theobroma cacao HOM05D002997 ORTHO05D003021 1.3e-08 63.2 50 56.0
Ca_20381_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 2.2e-08 62.4 74 41.9
Lj3g0023992 Lotus japonicus HOM05D002997 ORTHO05D003021 2.2e-08 62.4 82 41.5
Lalb_Chr24g0395881 Lupinus albus HOM05D002997 ORTHO05D003021 2.2e-08 62.4 48 58.3
MD17G1193700 Malus domestica HOM05D002997 ORTHO05D003021 2.2e-08 62.4 70 42.9
FAN09G1570 Fragaria x ananassa HOM05D002997 ORTHO05D003021 2.8e-08 62.0 108 39.8
Glyma.08G205600 Glycine max HOM05D002997 ORTHO05D003021 2.8e-08 62.0 78 41.0
CANSAT25G2877 Cannabis sativa HOM05D002997 ORTHO05D003021 3.7e-08 61.6 66 45.5
Glyma.13G358000 Glycine max HOM05D002997 ORTHO05D003021 3.7e-08 61.6 79 39.2
Lj3g0027232 Lotus japonicus HOM05D002997 ORTHO05D003021 4.9e-08 61.2 71 43.7
Manes.11G044600 Manihot esculenta HOM05D002997 ORTHO05D003021 4.9e-08 61.2 49 57.1
CiPaw.02G150100 Carya illinoinensis HOM05D002997 ORTHO05D003021 6.3e-08 60.8 75 42.7
Ca_01122_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 6.3e-08 60.8 47 53.2
Glyma.15G015400 Glycine max HOM05D002997 ORTHO05D003021 6.3e-08 60.8 80 43.8
Phvul.005G168000 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 6.3e-08 60.8 84 39.3
Gohir.D10G070750 Gossypium hirsutum HOM05D002997 ORTHO05D003021 8.3e-08 60.5 50 52.0
TWI12G0343 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 8.3e-08 60.5 79 38.0
Cpa.g.sc98.24 Carica papaya HOM05D002997 ORTHO05D003021 1.1e-07 60.1 66 45.5
ClCG09G002040 Citrullus lanatus HOM05D001537 ORTHO05D008612 1.1e-07 60.1 80 41.2
Glyma.07G005100 Glycine max HOM05D002997 ORTHO05D003021 1.4e-07 59.7 81 42.0
Gohir.A10G080600 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.4e-07 59.7 50 52.0
TPR.G17668 Trifolium pratense HOM05D002997 ORTHO05D003021 1.4e-07 59.7 48 52.1
Potri.001G182500 Populus trichocarpa HOM05D002997 ORTHO05D003021 1.8e-07 59.3 76 39.5
Manes.11G044900 Manihot esculenta HOM05D002997 ORTHO05D003021 2.4e-07 58.9 69 42.0
Medtr0147s0020 Medicago truncatula HOM05D002997 ORTHO05D003021 2.4e-07 58.9 48 52.1
TAR624G0694 Trochodendron aralioides HOM05D002997 ORTHO05D003021 2.4e-07 58.9 76 38.2
Psat7g250680 Pisum sativum HOM05D002997 ORTHO05D003021 3.1e-07 58.5 70 40.0
Atru.chr1.3308 Acer truncatum HOM05D002997 ORTHO05D003021 4.1e-07 58.2 50 50.0
arahy.Tifrunner.gnm1.ann1.170V9L Arachis hypogaea HOM05D002997 ORTHO05D003021 4.1e-07 58.2 50 48.0
arahy.Tifrunner.gnm1.ann1.RP73U6 Arachis hypogaea HOM05D002997 ORTHO05D003021 4.1e-07 58.2 50 48.0
Duzib160G0665 Durio zibethinus HOM05D002997 ORTHO05D003021 4.1e-07 58.2 84 39.3
TPR.G37204 Trifolium pratense HOM05D002997 ORTHO05D003021 4.1e-07 58.2 73 39.7
Sed0011193 Sechium edule HOM05D002997 ORTHO05D003021 5.4e-07 57.8 80 41.2
MELO3C024242.2 Cucumis melo HOM05D002997 ORTHO05D003021 9.2e-07 57.0 82 40.2
Medtr8g103530 Medicago truncatula HOM05D002997 ORTHO05D003021 9.2e-07 57.0 84 38.1
Ca_17338_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 1.2e-06 56.6 70 41.4
CsaV3_7G033290 Cucumis sativus L. HOM05D002997 ORTHO05D003021 1.2e-06 56.6 80 40.0
Gorai.011G075100 Gossypium raimondii HOM05D002997 ORTHO05D003021 1.2e-06 56.6 89 36.0
Psat5g298440 Pisum sativum HOM05D002997 ORTHO05D003021 1.2e-06 56.6 41 58.5
PGR102G2036 Punica granatum HOM05D002997 ORTHO05D003021 1.2e-06 56.6 81 44.4
Eucgr.J02977 Eucalyptus grandis HOM05D002997 ORTHO05D003021 1.6e-06 56.2 81 37.0
Rhsim12G0199200 Rhododendron simsii HOM05D002997 ORTHO05D003021 1.6e-06 56.2 93 34.4
Glyma.05G231000 Glycine max HOM05D002997 ORTHO05D003021 2.0e-06 55.8 86 37.2
VMungo0331G0516 Vigna mungo HOM05D002997 ORTHO05D003021 2.0e-06 55.8 86 39.5
Eucgr.F03026 Eucalyptus grandis HOM05D002997 ORTHO05D003021 2.7e-06 55.5 50 48.0
Prupe.7G231300 Prunus persica HOM05D002997 ORTHO05D003021 2.7e-06 55.5 81 38.3
Rhsim01G0094800 Rhododendron simsii HOM05D002997 ORTHO05D003021 2.7e-06 55.5 93 38.7
Cc06_g09680 Coffea canephora HOM05D002997 ORTHO05D003021 4.5e-06 54.7 50 46.0
Lalb_Chr14g0371511 Lupinus albus HOM05D002997 ORTHO05D003021 4.5e-06 54.7 86 32.6
Potri.018G080001 Populus trichocarpa HOM05D002997 ORTHO05D003021 4.5e-06 54.7 48 50.0
EL10Ac9g22016 Beta vulgaris HOM05D001537 ORTHO05D008612 5.9e-06 54.3 50 48.0
Potri.003G053600 Populus trichocarpa HOM05D002997 ORTHO05D003021 5.9e-06 54.3 76 36.8
Sabra01G0145100 Salix brachista HOM05D002997 ORTHO05D003021 5.9e-06 54.3 77 39.0
Sabra03G0029800 Salix brachista HOM05D002997 ORTHO05D003021 5.9e-06 54.3 91 38.5
Lsat_1_v5_gn_4_102060 Lactuca sativa HOM05D002997 ORTHO05D003021 7.8e-06 53.9 68 38.2
Nn8g39177 Nelumbo nucifera HOM05D002997 ORTHO05D003021 7.8e-06 53.9 67 38.8


User provided reference genes

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