Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p47740 Brassica napus HOM05D010856 ORTHO05D013526 1.6e-233 812.4 401 100.0
C01p47780 Brassica napus HOM05D010856 ORTHO05D013526 1.3e-232 809.3 401 99.8
A01p37720 Brassica napus HOM05D010856 ORTHO05D013526 1.6e-217 759.2 394 95.9
C01p47770 Brassica napus HOM05D010856 ORTHO05D013526 2.1e-214 748.8 412 92.2
C01p47730 Brassica napus HOM05D010856 ORTHO05D013526 7.1e-194 680.6 406 86.2
BcaC09g48615 Brassica carinata HOM05D010856 ORTHO05D013526 3.5e-148 528.9 359 78.0
BolC1t04746H Brassica oleracea HOM05D010856 ORTHO05D013526 5.2e-128 461.8 335 73.1
BcaB04g20915 Brassica carinata HOM05D010856 ORTHO05D013526 1.7e-126 456.8 402 63.4
C01p47760 Brassica napus HOM05D010856 ORTHO05D013526 5.4e-109 398.7 216 91.7
C01p48820 Brassica napus HOM05D010856 ORTHO05D013526 1.7e-46 191.0 328 40.2
A01p38490 Brassica napus HOM05D010856 ORTHO05D013526 2.2e-41 174.1 298 40.6
BraA01t03832Z Brassica rapa HOM05D010856 ORTHO05D013526 2.4e-40 170.6 84 94.0
BcaC09g48526 Brassica carinata HOM05D010856 ORTHO05D013526 2.3e-35 154.1 98 79.6
BraA01t03899Z Brassica rapa HOM05D010856 ORTHO05D013526 8.8e-35 152.1 78 92.3
BcaC09g48525 Brassica carinata HOM05D010856 ORTHO05D013526 1.2e-34 151.8 85 83.5
BolC1t04837H Brassica oleracea HOM05D010856 ORTHO05D013526 9.8e-34 148.7 106 70.8
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 2.1e-28 131.0 282 33.7
Glyma.15G014302 Glycine max HOM05D006749 ORTHO05D013526 7.5e-26 122.5 119 54.6
Dinv38048 Davidia involucrata HOM05D006749 ORTHO05D008352 2.4e-24 117.5 353 29.2
Sp3g14360 Schrenkiella parvula HOM05D006749 ORTHO05D008352 5.4e-24 116.3 437 26.1
AT3G16010 Arabidopsis thaliana HOM05D006749 ORTHO05D008352 4.5e-23 113.2 437 26.1
Carub.0003s1574 Capsella rubella HOM05D006749 ORTHO05D008352 2.3e-22 110.9 421 25.9
AL3G28660 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 5.0e-22 109.8 398 26.1
ATR0796G148 Amborella trichopoda HOM05D006749 ORTHO05D008352 1.1e-21 108.6 153 41.2
Thhalv10020273m.g Eutrema salsugineum HOM05D006749 ORTHO05D008352 4.3e-21 106.7 421 25.9
CAN.G572.47 Capsicum annuum HOM05D006749 ORTHO05D008352 5.6e-21 106.3 401 26.4
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 7.3e-21 105.9 393 25.4
PGSC0003DMG400031380 Solanum tuberosum HOM05D006749 ORTHO05D008352 9.5e-21 105.5 391 25.1
A03p39640 Brassica napus HOM05D006749 ORTHO05D008352 1.2e-20 105.1 448 26.6
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 6.1e-20 102.8 422 24.6
Solyc12g043100.2 Solanum lycopersicum HOM05D006749 ORTHO05D008352 6.1e-20 102.8 391 24.8
Sopen12g022350 Solanum pennellii HOM05D006749 ORTHO05D008352 6.1e-20 102.8 391 24.8
Aa31LG8G3180 Aethionema arabicum HOM05D006749 ORTHO05D008352 8.0e-20 102.4 437 25.4
Dinv30512 Davidia involucrata HOM05D006749 ORTHO05D008352 1.0e-19 102.1 349 27.8
Nitab4.5_0008982g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 3.0e-19 100.5 402 25.1
BcaC01g03842 Brassica carinata HOM05D006749 ORTHO05D008352 5.2e-19 99.8 420 24.5
BolC3t17083H Brassica oleracea HOM05D006749 ORTHO05D008352 5.2e-19 99.8 420 24.5
C03p48040 Brassica napus HOM05D006749 ORTHO05D008352 8.9e-19 99.0 441 25.9
Cc04_g03450 Coffea canephora HOM05D006749 ORTHO05D008352 8.9e-19 99.0 388 24.5
CARHR091140 Cardamine hirsuta HOM05D006749 ORTHO05D008352 1.2e-18 98.6 534 23.4
Gohir.A06G188200 Gossypium hirsutum HOM05D006749 ORTHO05D008352 1.2e-18 98.6 376 25.0
Cpa.g.sc68.20 Carica papaya HOM05D006749 ORTHO05D008352 2.0e-18 97.8 382 24.9
BcaB04g18873 Brassica carinata HOM05D006749 ORTHO05D008352 2.6e-18 97.4 418 24.6
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 4.4e-18 96.7 382 24.6
Manes.04G123300 Manihot esculenta HOM05D006749 ORTHO05D008352 5.7e-18 96.3 384 24.5
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 2.2e-17 94.4 379 23.7
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 2.2e-17 94.4 384 24.5
Ah.01g005340 Amaranthus hybridus HOM05D006749 ORTHO05D008352 2.9e-17 94.0 378 23.5
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 3.7e-17 93.6 383 24.0
EL10Ac9g21998 Beta vulgaris HOM05D006749 ORTHO05D008352 6.4e-17 92.8 382 23.8
MD17G1195500 Malus domestica HOM05D006749 ORTHO05D008352 6.4e-17 92.8 396 24.5
Cfa002064 Carpinus fangiana HOM05D006749 ORTHO05D008352 8.3e-17 92.4 379 23.5
Ciclev10023415m.g Citrus clementina HOM05D006749 ORTHO05D008352 1.1e-16 92.0 380 24.5
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 1.1e-16 92.0 386 25.1
CSS0018907 Camellia sinensis var. sinensis HOM05D006749 ORTHO05D008352 1.8e-16 91.3 383 23.8
Nitab4.5_0002438g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 2.4e-16 90.9 394 24.1
THA.LOC104817996 Tarenaya hassleriana HOM05D006749 ORTHO05D008352 7.0e-16 89.4 378 23.5
Duzib235G0398 Durio zibethinus HOM05D006749 ORTHO05D008352 1.2e-15 88.6 431 23.7
CsaV3_3G025150 Cucumis sativus L. HOM05D006749 ORTHO05D008352 3.5e-15 87.0 376 23.7
Lj5C60T11 Lonicera japonica HOM05D006749 ORTHO05D008352 4.6e-15 86.7 391 25.3
SGA_v2.0_scaffold5G02592 Striga asiatica HOM05D006749 ORTHO05D008352 5.9e-15 86.3 372 22.6
MSTRG.11079 Avicennia marina HOM05D006749 ORTHO05D008352 7.8e-15 85.9 386 23.1
Migut.I00863 Erythranthe guttata HOM05D006749 ORTHO05D008352 7.8e-15 85.9 384 22.7
Glyma.13G359600 Glycine max HOM05D006749 ORTHO05D008352 7.8e-15 85.9 380 23.4
MBI04_g22013_MAGBIO Magnolia biondii HOM05D006749 ORTHO05D008352 1.3e-14 85.1 386 23.6
RcHm_v2.0_Chr2g0137841 Rosa chinensis HOM05D006749 ORTHO05D008352 1.3e-14 85.1 422 23.5
unitig_27.g25088 Utricularia gibba HOM05D006749 ORTHO05D008352 1.3e-14 85.1 291 25.8
MELO3C012957.2 Cucumis melo HOM05D006749 ORTHO05D008352 1.7e-14 84.7 376 23.4
ClCG07G013030 Citrullus lanatus HOM05D006749 ORTHO05D008352 2.3e-14 84.3 376 23.7
CiPaw.02G151100 Carya illinoinensis HOM05D006749 ORTHO05D008352 3.0e-14 84.0 422 22.3
Actinidia08976 Actinidia chinensis HOM05D006749 ORTHO05D008352 3.9e-14 83.6 377 24.1
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 3.9e-14 83.6 377 23.1
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 3.9e-14 83.6 389 22.9
ATR0315G083 Amborella trichopoda HOM05D006749 ORTHO05D008352 5.0e-14 83.2 387 23.0
Prupe.3G071400 Prunus persica HOM05D006749 ORTHO05D008352 5.0e-14 83.2 391 23.0
Lj3g0002516 Lotus japonicus HOM05D006749 ORTHO05D008352 6.6e-14 82.8 384 21.6
DCAR_026313 Daucus carota HOM05D006749 ORTHO05D008352 8.6e-14 82.4 377 23.1
FAN05G1436 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.5e-13 81.6 390 22.8
Psat5g299040 Pisum sativum HOM05D006749 ORTHO05D008352 1.5e-13 81.6 379 22.7
FvH4_6g31160 Fragaria vesca HOM05D006749 ORTHO05D008352 1.9e-13 81.3 390 22.8
FAN14G3575 Fragaria x ananassa HOM05D006749 ORTHO05D008352 1.9e-13 81.3 390 22.8
Oeu025379.3 Olea europaea HOM05D006749 ORTHO05D008352 2.5e-13 80.9 314 24.5
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 3.3e-13 80.5 378 22.5
arahy.Tifrunner.gnm1.ann1.8GL56R Arachis hypogaea HOM05D006749 ORTHO05D008352 4.3e-13 80.1 343 24.2
arahy.Tifrunner.gnm1.ann1.TALZ6N Arachis hypogaea HOM05D006749 ORTHO05D008352 4.3e-13 80.1 343 24.2
FAN02G2386 Fragaria x ananassa HOM05D006749 ORTHO05D008352 4.3e-13 80.1 390 22.6
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 5.6e-13 79.7 343 25.1
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 7.3e-13 79.3 378 22.5
TPR.G37281 Trifolium pratense HOM05D006749 ORTHO05D008352 7.3e-13 79.3 383 22.7
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 1.2e-12 78.6 255 25.1
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 1.6e-12 78.2 374 22.7
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 1.6e-12 78.2 241 28.2
FAN09G1040 Fragaria x ananassa HOM05D006749 ORTHO05D008352 2.1e-12 77.8 387 22.2
ATR0796G323 Amborella trichopoda HOM05D006749 ORTHO05D008352 2.8e-12 77.4 110 43.6
HanXRQChr09g0275241 Helianthus annuus HOM05D006749 ORTHO05D008352 3.6e-12 77.0 207 28.0
SHI10915 Sapria himalayana HOM05D006749 ORTHO05D008352 3.6e-12 77.0 393 23.7
Medtr2g102210 Medicago truncatula HOM05D006749 ORTHO05D008352 8.0e-12 75.9 383 22.2
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 8.0e-12 75.9 373 22.5
Rhsim12G0197800 Rhododendron simsii HOM05D006749 ORTHO05D008352 1.4e-11 75.1 202 28.7
Thecc.06G087000 Theobroma cacao HOM05D006749 ORTHO05D008352 1.4e-11 75.1 431 22.3
Lalb_Chr22g0351261 Lupinus albus HOM05D006749 ORTHO05D008352 3.1e-11 73.9 59 57.6
Aqoxy7G01745 Aquilegia oxysepala HOM05D001061 ORTHO05D007103 4.0e-11 73.6 54 61.1
CANSAT54G2088 Cannabis sativa HOM05D006749 ORTHO05D008352 5.2e-11 73.2 379 21.6
Lsat_1_v5_gn_4_103720 Lactuca sativa HOM05D006749 ORTHO05D008352 1.2e-10 72.0 246 26.4
Nn3g16958 Nelumbo nucifera HOM05D006749 ORTHO05D008352 1.2e-10 72.0 55 58.2
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.2e-10 72.0 237 24.9
VMungo1080G0367 Vigna mungo HOM05D006749 ORTHO05D008352 1.5e-10 71.6 54 59.3
Eucgr.J02992 Eucalyptus grandis HOM05D006749 ORTHO05D008352 2.0e-10 71.2 179 30.2
Phvul.005G171500 Phaseolus vulgaris HOM05D006749 ORTHO05D008352 2.0e-10 71.2 53 58.5
Zm00001eb378780 Zea mays HOM05D006749 ORTHO05D008352 2.6e-10 70.9 272 23.9
HPP92_021740 Vanilla planifolia HOM05D006749 ORTHO05D008352 4.4e-10 70.1 379 20.8
Atru.chr1.3269 Acer truncatum HOM05D006749 ORTHO05D008352 5.8e-10 69.7 50 64.0
ECA248G2906 Erigeron canadensis HOM05D006749 ORTHO05D008352 7.5e-10 69.3 205 28.3
Gohir.D06G194300 Gossypium hirsutum HOM05D006749 ORTHO05D008352 9.8e-10 68.9 53 58.5
Gorai.010G228100 Gossypium raimondii HOM05D006749 ORTHO05D008352 9.8e-10 68.9 53 58.5
Os02g0266200 Oryza sativa ssp. japonica HOM05D006749 ORTHO05D008352 1.3e-09 68.6 272 23.2
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 1.7e-09 68.2 254 23.2
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 1.7e-09 68.2 303 25.7
Zm00001eb054940 Zea mays HOM05D006749 ORTHO05D008352 4.9e-09 66.6 272 23.2
TAR626G0678 Trochodendron aralioides HOM05D006749 ORTHO05D008352 6.4e-09 66.2 51 56.9
Sed0027244 Sechium edule HOM05D006749 ORTHO05D008352 8.3e-09 65.9 51 52.9
vmacro16952 Vaccinium macrocarpon HOM05D006749 ORTHO05D008352 8.3e-09 65.9 51 54.9
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 1.4e-08 65.1 254 24.0
arahy.Tifrunner.gnm1.ann1.SZQK1H Arachis hypogaea HOM05D006749 ORTHO05D008352 1.4e-08 65.1 80 42.5
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 3.2e-08 63.9 276 22.5
SEGI_16454 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 7.0e-08 62.8 160 30.0
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 7.0e-08 62.8 228 25.4
Gohir.A06G047500 Gossypium hirsutum HOM05D000424 ORTHO05D009589 9.2e-08 62.4 269 26.4
CDE04G2662 Ceratophyllum demersum HOM05D006749 ORTHO05D008352 1.2e-07 62.0 178 28.7
Hund00615 Selenicereus undatus HOM05D006749 ORTHO05D008352 3.5e-07 60.5 237 24.5
SEGI_33426 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 3.5e-07 60.5 230 26.1
SEGI_33441 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 3.5e-07 60.5 230 26.1
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 4.6e-07 60.1 169 26.6
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 6.0e-07 59.7 304 23.0
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 7.8e-07 59.3 266 23.3
Actinidia24758 Actinidia chinensis HOM05D006749 ORTHO05D008352 1.0e-06 58.9 146 29.5
Aa31LG1G19040 Aethionema arabicum HOM05D004271 ORTHO05D006011 1.7e-06 58.2 186 25.8
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 1.7e-06 58.2 215 23.7
Lj5C471T0 Lonicera japonica HOM05D000001 ORTHO05D009582 1.7e-06 58.2 115 34.8
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.0e-06 57.4 65 41.5
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 3.0e-06 57.4 65 41.5
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 3.0e-06 57.4 65 41.5
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.0e-06 57.4 65 41.5
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 3.0e-06 57.4 65 41.5
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 3.0e-06 57.4 92 38.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.0e-06 57.4 302 22.8
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 3.0e-06 57.4 243 22.2
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 5.0e-06 56.6 250 24.8
CDE07G0739 Ceratophyllum demersum HOM05D003039 ORTHO05D008410 5.0e-06 56.6 238 23.9
FAN09G0226 Fragaria x ananassa HOM05D007830 ORTHO05D009947 5.0e-06 56.6 176 26.7
Sed0015503 Sechium edule HOM05D001779 ORTHO05D001753 5.0e-06 56.6 204 24.5
Sc09g0003190 Simmondsia chinensis HOM05D000001 ORTHO05D009582 6.6e-06 56.2 118 28.8
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 8.6e-06 55.8 209 23.9
CiPaw.14G009800 Carya illinoinensis HOM05D002649 ORTHO05D002838 8.6e-06 55.8 238 31.1
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 8.6e-06 55.8 194 26.3
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 8.6e-06 55.8 304 23.7


User provided reference genes

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