Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p42360 Brassica napus HOM05D001891 ORTHO05D005832 2.2e-27 124.8 59 100.0
BolC1t04191H Brassica oleracea HOM05D001891 ORTHO05D005832 6.9e-21 103.2 51 96.1
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 2.3e-16 88.2 50 86.0
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 1.5e-15 85.5 50 82.0
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 1.5e-15 85.5 50 82.0
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 2.5e-15 84.7 49 81.6
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 2.5e-15 84.7 49 81.6
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 7.4e-15 83.2 49 79.6
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 2.8e-14 81.3 50 78.0
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 6.3e-14 80.1 48 77.1
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.2e-14 79.7 46 78.3
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.4e-13 79.0 50 76.0
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 78.7
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 3.1e-13 77.8 45 80.0
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.1e-13 77.8 46 76.1
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 5.3e-13 77.0 46 76.1
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 5.3e-13 77.0 46 76.1
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 6.9e-13 76.6 47 74.5
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 6.9e-13 76.6 46 71.7
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 9.1e-13 76.3 47 72.3
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 9.1e-13 76.3 45 77.8
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 1.2e-12 75.9 50 72.0
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.5e-12 75.5 45 77.8
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.5e-12 75.5 46 73.9
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.5e-12 75.5 45 73.3
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 2.0e-12 75.1 45 71.1
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 2.0e-12 75.1 45 77.8
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 2.6e-12 74.7 48 70.8
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 4.5e-12 73.9 45 73.3
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 7.7e-12 73.2 47 70.2
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 7.7e-12 73.2 45 73.3
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 1.0e-11 72.8 47 68.1
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 1.3e-11 72.4 45 73.3
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 1.7e-11 72.0 45 71.1
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 1.7e-11 72.0 46 71.7
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.7e-11 72.0 45 73.3
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 2.2e-11 71.6 42 73.8
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 2.9e-11 71.2 42 73.8
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 2.9e-11 71.2 42 73.8
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 2.9e-11 71.2 46 67.4
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 2.9e-11 71.2 46 67.4
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 2.9e-11 71.2 45 66.7
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 3.8e-11 70.9 44 75.0
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 3.8e-11 70.9 45 68.9
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 3.8e-11 70.9 42 73.8
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 3.8e-11 70.9 45 71.1
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 5.0e-11 70.5 45 66.7
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 5.0e-11 70.5 45 66.7
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 5.0e-11 70.5 45 66.7
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 5.0e-11 70.5 45 66.7
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 5.0e-11 70.5 45 68.9
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 5.0e-11 70.5 47 63.8
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 6.5e-11 70.1 45 66.7
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 8.5e-11 69.7 46 67.4
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 8.5e-11 69.7 45 66.7
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 8.5e-11 69.7 46 67.4
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 8.5e-11 69.7 46 67.4
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 1.1e-10 69.3 45 71.1
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 1.1e-10 69.3 45 64.4
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.1e-10 69.3 46 65.2
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.1e-10 69.3 46 65.2
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 1.1e-10 69.3 46 65.2
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 1.1e-10 69.3 45 68.9
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 1.1e-10 69.3 45 68.9
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 1.4e-10 68.9 45 66.7
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 1.9e-10 68.6 42 71.4
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 1.9e-10 68.6 45 66.7
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 2.5e-10 68.2 46 63.0
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 2.5e-10 68.2 47 66.0
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 2.5e-10 68.2 47 66.0
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 2.5e-10 68.2 45 66.7
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 3.2e-10 67.8 45 64.4
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 3.2e-10 67.8 45 66.7
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 3.2e-10 67.8 45 66.7
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 7.2e-10 66.6 45 66.7
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 7.2e-10 66.6 47 61.7
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 9.4e-10 66.2 46 65.2
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 9.4e-10 66.2 48 62.5
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 9.4e-10 66.2 48 62.5
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 1.2e-09 65.9 47 59.6
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.2e-09 65.9 46 65.2
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 1.2e-09 65.9 45 62.2
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 2.1e-09 65.1 47 61.7
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 2.1e-09 65.1 48 58.3
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 2.7e-09 64.7 45 64.4
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 3.6e-09 64.3 41 68.3
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 4.7e-09 63.9 44 63.6
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 6.1e-09 63.5 45 60.0
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 1.4e-08 62.4 45 64.4
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.8e-08 62.0 46 63.0
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 1.8e-08 62.0 47 61.7
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 1.8e-08 62.0 45 62.2
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 2.3e-08 61.6 45 57.8
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 2.3e-08 61.6 46 58.7
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.9e-08 60.8 38 73.7
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 6.7e-08 60.1 45 60.0
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 5.7e-07 57.0 48 47.9
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 3.7e-06 54.3 49 49.0
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 4.8e-06 53.9 38 60.5


User provided reference genes

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