Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 9.1e-168 593.6 317 100.0
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.0e-166 590.1 299 99.7
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.9e-166 588.6 299 99.0
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.9e-166 588.6 299 99.0
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 3.6e-164 581.6 299 97.7
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 5.7e-162 574.3 299 96.3
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.3e-161 573.2 299 96.0
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 4.1e-160 568.2 299 94.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 7.0e-160 567.4 299 95.3
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 7.0e-160 567.4 299 95.3
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.6e-159 566.2 299 95.0
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 2.0e-154 549.3 299 92.3
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 2.0e-151 539.3 299 90.3
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.3e-150 536.6 299 89.0
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 9.4e-149 530.4 299 88.3
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 6.1e-148 527.7 299 88.6
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.4e-146 521.5 299 87.3
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 5.9e-143 511.1 299 85.3
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 4.5e-135 485.0 299 79.3
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.9e-129 465.7 299 74.2
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 8.3e-129 464.2 299 75.3
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.1e-128 461.8 299 74.2
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 5.4e-128 461.5 299 73.6
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 9.2e-128 460.7 299 74.2
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 2.0e-127 459.5 299 74.2
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 3.5e-127 458.8 299 73.2
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.5e-125 452.6 299 72.9
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 4.3e-125 451.8 299 72.6
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 5.6e-125 451.4 299 73.2
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 1.2e-124 450.3 299 72.2
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 2.8e-124 449.1 299 71.2
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 3.6e-124 448.7 299 71.6
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.6e-124 448.7 299 72.2
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 4.7e-124 448.4 299 71.9
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 6.2e-124 448.0 298 71.1
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 6.2e-124 448.0 295 73.2
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 6.2e-124 448.0 299 72.2
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 8.0e-124 447.6 299 71.9
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.8e-123 446.4 299 71.2
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 2.3e-123 446.0 298 72.5
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 2.3e-123 446.0 299 71.6
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.0e-123 445.3 299 72.2
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 4.0e-123 445.3 299 70.9
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 5.2e-123 444.9 299 70.9
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 6.8e-123 444.5 257 83.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.2e-122 443.7 299 68.2
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.5e-122 443.4 299 71.6
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 2.6e-122 442.6 299 71.9
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 2.6e-122 442.6 299 71.6
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 3.4e-122 442.2 299 72.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 7.5e-122 441.0 298 71.1
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 9.8e-122 440.7 298 71.5
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 9.8e-122 440.7 297 70.7
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.3e-121 440.3 299 70.6
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.4e-120 436.8 298 71.1
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.9e-120 436.4 297 69.7
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.4e-120 436.0 299 69.2
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 2.4e-120 436.0 298 68.8
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.1e-120 435.3 299 68.2
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 5.4e-120 434.9 299 70.6
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 9.2e-120 434.1 297 68.7
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.2e-119 433.7 297 68.4
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 2.0e-119 433.0 299 68.2
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 2.0e-119 433.0 299 69.9
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 4.6e-119 431.8 299 69.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 4.6e-119 431.8 299 69.9
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 6.0e-119 431.4 299 68.6
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 7.8e-119 431.0 299 69.6
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.0e-118 430.6 299 69.6
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.7e-118 429.9 299 69.6
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.3e-118 429.5 298 69.5
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.0e-118 429.1 297 69.7
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 6.6e-118 427.9 326 63.8
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 6.6e-118 427.9 299 68.2
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 8.6e-118 427.6 293 70.6
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 8.6e-118 427.6 299 68.6
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.1e-117 427.2 299 69.6
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 3.3e-117 425.6 298 68.8
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 4.3e-117 425.2 297 68.4
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 5.6e-117 424.9 299 68.2
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 7.3e-117 424.5 299 67.9
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.2e-116 423.7 298 68.8
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 2.1e-116 422.9 299 68.2
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 3.6e-116 422.2 293 68.9
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 1.8e-115 419.9 308 66.9
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 3.1e-115 419.1 301 67.4
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 4.0e-115 418.7 298 67.1
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 5.2e-115 418.3 309 66.3
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.2e-115 418.3 309 66.3
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.2e-115 418.3 309 66.3
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 5.2e-115 418.3 309 66.7
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 5.2e-115 418.3 299 68.2
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.5e-114 416.8 289 70.9
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.5e-114 416.8 299 66.9
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.8e-114 414.1 309 65.4
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.3e-113 413.7 309 65.7
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.2e-113 412.9 298 66.8
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.1e-112 410.6 299 65.9
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-112 410.6 319 64.3
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.9e-112 409.8 277 70.4
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 4.1e-112 408.7 274 69.7
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 7.1e-112 407.9 326 61.0
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.6e-111 406.8 299 65.2
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.1e-111 406.4 294 68.0
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 4.6e-111 405.2 285 69.5
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 6.0e-111 404.8 297 64.6
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 5.1e-110 401.7 291 66.7
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 6.6e-110 401.4 254 74.0
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.5e-109 400.2 294 65.6
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 3.3e-109 399.1 294 65.0
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 4.3e-109 398.7 299 64.5
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.8e-108 396.0 294 64.6
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.4e-107 393.7 289 66.1
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.3e-107 392.9 297 67.3
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 5.2e-107 391.7 297 67.0
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.9e-105 386.0 299 63.2
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-104 383.6 253 71.1
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.6e-103 380.2 312 63.5
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.5e-93 347.1 296 59.1
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 8.4e-89 331.3 299 56.9
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.4e-88 330.5 298 56.4
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.2e-87 327.4 219 70.8
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 2.7e-87 326.2 297 54.9
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 4.3e-85 318.9 299 54.2
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.0e-83 312.4 223 67.3
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.8e-82 308.5 294 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 7.6e-82 308.1 307 51.8
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 7.6e-82 308.1 208 69.7
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 2.6e-74 283.1 274 55.1
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.7e-73 280.4 276 52.9
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.6e-71 273.9 289 49.1
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.3e-62 244.2 295 45.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.1e-55 220.3 213 53.1
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 1.8e-46 190.7 276 39.5
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.3e-41 174.5 171 57.3
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.7e-36 156.4 107 69.2
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 6.8e-30 135.6 93 69.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 7.5e-29 132.1 94 68.1
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 2.0e-26 124.0 91 74.7
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 2.0e-26 124.0 91 74.7
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 3.2e-24 116.7 89 65.2
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.2e-22 109.4 79 68.4
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 1.1e-19 101.7 91 62.6
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 3.6e-15 86.7 98 49.0
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 1.6e-07 61.2 84 45.2
C06p07140 Brassica napus HOM05D005183 ORTHO05D100002 8.0e-07 58.9 33 87.9


User provided reference genes

Program Settings