Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 2.1e-146 522.3 262 100.0
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 3.8e-87 325.5 210 80.0
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 5.9e-72 275.0 380 50.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 8.8e-68 261.2 371 48.0
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 8.8e-68 261.2 371 48.0
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 2.7e-64 249.6 371 46.1
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.0e-63 247.7 378 45.8
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.3e-63 247.3 380 45.5
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 1.7e-63 246.9 369 46.6
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 1.5e-62 243.8 380 44.2
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 3.2e-62 242.7 380 44.5
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 4.2e-62 242.3 377 44.6
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 1.6e-61 240.4 119 100.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 3.6e-61 239.2 380 43.9
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 2.2e-58 229.9 377 44.3
BraA01t02503Z Brassica rapa HOM05D003893 ORTHO05D017260 4.1e-57 225.7 118 94.9
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.3e-55 220.7 375 42.9
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 2.3e-36 156.8 371 35.0
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 5.1e-31 139.0 71 97.2
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 6.4e-26 122.1 184 41.8
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 4.6e-24 115.9 86 80.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 6.0e-24 115.5 152 44.7
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 1.7e-23 114.0 157 42.7
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 8.6e-23 111.7 152 42.1
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 1.5e-22 110.9 86 77.9
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 1.5e-22 110.9 140 45.7
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.9e-22 110.5 141 44.7
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.9e-22 110.5 141 44.7
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.5e-22 110.2 141 45.4
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 2.5e-22 110.2 141 44.7
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 4.3e-22 109.4 141 46.1
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 1.2e-21 107.8 117 47.0
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.2e-21 107.8 141 42.6
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-21 106.3 265 30.6
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 3.6e-21 106.3 287 30.0
BcaC09g49608 Brassica carinata HOM05D000205 ORTHO05D017260 1.1e-20 104.8 75 77.3
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.8e-20 104.0 116 45.7
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 2.0e-19 100.5 117 47.0
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.0e-19 100.5 114 44.7
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 3.4e-19 99.8 141 41.1
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.9e-19 98.2 119 44.5
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.3e-18 97.8 119 44.5
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.7e-18 97.4 119 43.7
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 2.9e-18 96.7 117 43.6
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 3.8e-18 96.3 113 45.1
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 4.9e-18 95.9 141 40.4
BraA01t02502Z Brassica rapa HOM05D003893 ORTHO05D107320 1.1e-17 94.7 53 90.6
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.1e-17 94.7 140 40.7
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 1.1e-17 94.7 140 43.6
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 1.4e-17 94.4 116 44.8
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.9e-17 94.0 142 40.1
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 3.2e-17 93.2 140 42.9
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 4.2e-17 92.8 141 39.0
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 5.4e-17 92.4 168 36.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 5.4e-17 92.4 305 29.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 9.3e-17 91.7 115 43.5
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 1.2e-16 91.3 140 42.9
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 2.7e-16 90.1 156 37.2
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 3.5e-16 89.7 115 41.7
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 4.6e-16 89.4 120 41.7
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.0e-15 88.2 116 38.8
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.3e-15 87.8 115 42.6
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.7e-15 87.4 117 41.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.7e-15 87.4 140 42.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 1.7e-15 87.4 118 38.1
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 2.3e-15 87.0 118 39.0
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 6.6e-15 85.5 144 37.5
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 8.7e-15 85.1 118 41.5
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 2.5e-14 83.6 120 38.3
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 2.5e-14 83.6 123 39.0
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 5.6e-14 82.4 118 42.4
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 7.3e-14 82.0 118 40.7
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.8e-13 80.1 117 35.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.8e-13 80.1 117 35.9
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 3.6e-13 79.7 115 40.0
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 6.2e-13 79.0 152 36.2
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 1.1e-12 78.2 144 34.7
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.4e-12 77.8 118 37.3
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.4e-12 77.0 377 26.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 2.4e-12 77.0 144 34.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 3.1e-12 76.6 103 42.7
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 5.3e-12 75.9 120 38.3
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 9.0e-12 75.1 140 33.6
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.5e-11 74.3 81 50.6
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 5.8e-11 72.4 113 40.7
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 9.9e-11 71.6 107 35.5
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 6.4e-10 68.9 81 40.7
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 2.3e-07 60.5 159 27.7
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.3e-06 56.6 290 25.9
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 9.6e-06 55.1 61 52.5


User provided reference genes

Program Settings