Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.8e-81 305.8 153 100.0
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.8e-81 305.8 153 100.0
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 4.7e-13 78.6 63 60.3
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 8.1e-13 77.8 61 62.3
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.4e-12 77.0 61 63.9
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.4e-12 77.0 61 62.3
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.8e-12 76.6 61 62.3
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.8e-12 76.6 61 62.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 2.3e-12 76.3 61 62.3
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.3e-12 76.3 61 62.3
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 2.3e-12 76.3 61 62.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 2.3e-12 76.3 61 62.3
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.3e-12 76.3 61 62.3
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 5.2e-12 75.1 61 59.0
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 5.2e-12 75.1 61 60.7
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 6.8e-12 74.7 61 60.7
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 6.8e-12 74.7 61 60.7
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.2e-11 73.9 61 60.7
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.4e-11 72.4 61 59.0
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 5.8e-11 71.6 61 57.4
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 7.6e-11 71.2 61 57.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 7.6e-11 71.2 61 57.4
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.3e-10 70.5 61 55.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.3e-10 70.5 61 55.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.7e-10 70.1 61 55.7
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 1.7e-10 70.1 61 52.5
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 2.2e-10 69.7 61 54.1
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.2e-10 69.7 61 55.7
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.2e-10 69.7 61 55.7
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 2.2e-10 69.7 61 55.7
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 2.9e-10 69.3 61 55.7
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 2.9e-10 69.3 61 55.7
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 2.9e-10 69.3 61 54.1
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 3.8e-10 68.9 61 54.1
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 3.8e-10 68.9 61 55.7
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 3.8e-10 68.9 61 55.7
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.9e-10 68.6 61 55.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 4.9e-10 68.6 61 54.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 4.9e-10 68.6 61 54.1
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 4.9e-10 68.6 61 54.1
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.4e-10 68.2 61 54.1
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.4e-10 68.2 61 54.1
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 6.4e-10 68.2 61 54.1
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 8.4e-10 67.8 61 50.8
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 8.4e-10 67.8 61 54.1
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 55.7
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 54.1
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 54.1
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 54.1
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 54.1
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 54.1
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 50.8
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.1e-09 67.4 61 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.4e-09 67.0 65 50.8
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.4e-09 67.0 61 54.1
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.4e-09 67.0 61 52.5
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 1.4e-09 67.0 61 52.5
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.4e-09 67.0 61 52.5
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.4e-09 67.0 61 54.1
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 52.5
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 54.1
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 54.1
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 52.5
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 54.1
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 54.1
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.9e-09 66.6 68 48.5
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 52.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 52.5
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.9e-09 66.6 61 54.1
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 2.4e-09 66.2 61 52.5
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 2.4e-09 66.2 61 54.1
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 2.4e-09 66.2 61 52.5
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 2.4e-09 66.2 61 52.5
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 2.4e-09 66.2 61 52.5
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 2.4e-09 66.2 61 54.1
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 3.2e-09 65.9 68 47.1
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 3.2e-09 65.9 61 52.5
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.2e-09 65.9 61 52.5
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 3.2e-09 65.9 61 52.5
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 54.1
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 50.8
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 52.5
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 52.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 52.5
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 52.5
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 4.1e-09 65.5 61 52.5
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 5.4e-09 65.1 61 54.1
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 5.4e-09 65.1 61 50.8
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 5.4e-09 65.1 61 52.5
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 7.1e-09 64.7 61 52.5
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 7.1e-09 64.7 61 52.5
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 7.1e-09 64.7 61 52.5
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 7.1e-09 64.7 61 50.8
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 7.1e-09 64.7 61 52.5
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 9.2e-09 64.3 61 52.5
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 1.2e-08 63.9 38 76.3
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.2e-08 63.9 61 50.8
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 1.2e-08 63.9 61 50.8
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.1e-08 63.2 61 50.8
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 2.1e-08 63.2 61 49.2
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 2.1e-08 63.2 61 52.5
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.7e-08 62.8 61 50.8
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 2.7e-08 62.8 38 71.1
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 3.5e-08 62.4 61 49.2
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 3.5e-08 62.4 61 49.2
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 4.6e-08 62.0 61 50.8
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 6.0e-08 61.6 61 49.2
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 7.8e-08 61.2 61 52.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 7.8e-08 61.2 61 44.3
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.0e-07 60.8 39 61.5
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.3e-07 60.5 61 50.8
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 1.7e-07 60.1 61 49.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.7e-07 60.1 61 49.2
Sp4g02500 Schrenkiella parvula HOM05D002967 ORTHO05D003281 3.9e-07 58.9 49 67.3
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 6.6e-07 58.2 33 75.8
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.5e-06 57.0 61 49.2
Thhalv10000497m.g Eutrema salsugineum HOM05D002967 ORTHO05D003281 3.3e-06 55.8 49 63.3


User provided reference genes

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