Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.8e-241 839.0 456 100.0
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-241 839.0 456 100.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.1e-238 828.2 473 95.6
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.6e-226 789.3 456 92.3
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.1e-226 788.9 466 93.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.8e-226 788.5 455 94.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-225 785.0 456 91.2
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 3.4e-224 781.6 455 90.8
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.9e-223 778.5 462 89.8
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-221 773.1 455 93.0
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 4.6e-221 771.2 456 90.8
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.3e-220 768.8 462 90.9
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 3.2e-214 748.4 462 86.4
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-213 746.5 455 91.4
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 8.6e-212 740.3 453 88.3
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 3.1e-209 731.9 458 87.8
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 5.8e-208 727.6 462 84.8
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.4e-207 724.2 463 87.3
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 7.1e-206 720.7 462 86.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 2.3e-204 715.7 476 84.5
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.3e-199 699.9 463 84.9
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.0e-196 690.3 462 82.7
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.0e-192 676.0 409 90.7
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 2.4e-185 652.5 466 77.9
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 6.2e-178 627.9 472 70.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.8e-177 626.3 446 79.4
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.8e-177 626.3 470 70.9
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 4.5e-176 621.7 469 71.6
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.2e-174 615.5 470 70.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 4.2e-174 615.1 466 70.0
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 6.0e-173 611.3 456 70.0
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 7.9e-173 610.9 471 69.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.3e-172 610.1 458 77.5
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 3.9e-172 608.6 473 68.1
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.1e-172 608.2 477 68.6
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 5.1e-172 608.2 474 68.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 3.3e-171 605.5 474 67.9
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.3e-171 605.1 473 66.8
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 9.7e-171 604.0 489 70.1
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.3e-170 603.6 467 68.7
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.1e-170 602.8 474 69.0
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 3.7e-170 602.1 464 69.2
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.7e-170 602.1 475 67.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.7e-170 602.1 464 70.0
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.8e-170 601.7 473 67.9
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 4.8e-170 601.7 464 69.0
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 6.3e-170 601.3 468 69.2
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 8.2e-170 600.9 471 68.8
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 8.2e-170 600.9 461 69.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.4e-169 600.1 483 66.0
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.8e-169 599.7 460 70.7
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.4e-169 599.4 464 69.6
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.4e-169 599.4 464 69.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.1e-169 598.6 465 67.7
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 6.9e-169 597.8 469 67.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-168 596.3 462 68.6
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 4.5e-168 595.1 471 67.1
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 7.6e-168 594.3 470 68.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.0e-167 594.0 488 64.5
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.0e-167 594.0 463 69.3
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.3e-167 593.6 469 68.0
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.7e-167 593.2 469 67.0
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.2e-167 592.8 458 67.9
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.9e-167 592.4 473 71.0
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 3.8e-167 592.0 470 68.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 5.0e-167 591.7 473 67.2
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 5.0e-167 591.7 455 70.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 8.5e-167 590.9 464 68.5
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.9e-166 589.7 465 66.7
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 3.2e-166 589.0 464 68.5
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 5.5e-166 588.2 468 66.2
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 9.3e-166 587.4 476 67.2
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.1e-165 586.3 468 66.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 2.1e-165 586.3 461 69.0
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 7.9e-165 584.3 468 68.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.0e-164 583.9 509 62.5
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.3e-164 583.6 461 68.5
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 3.0e-164 582.4 496 62.9
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 8.7e-164 580.9 456 67.1
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.7e-164 580.9 456 67.1
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 8.7e-164 580.9 468 67.5
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-163 580.5 463 70.8
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-163 580.5 463 70.8
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.3e-163 578.9 394 75.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.3e-163 578.9 481 66.1
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 9.7e-163 577.4 520 61.2
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.3e-162 577.0 471 66.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-162 577.0 446 67.9
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.3e-162 577.0 472 68.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 3.7e-162 575.5 472 68.2
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.1e-161 573.9 506 62.5
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 2.4e-161 572.8 393 73.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.1e-161 572.4 453 67.5
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.1e-161 572.0 513 62.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 7.7e-160 567.8 448 68.3
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 7.7e-160 567.8 478 66.1
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.2e-159 566.2 468 65.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.5e-158 562.8 527 60.2
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.2e-158 562.4 459 67.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 3.2e-158 562.4 345 79.1
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 9.4e-158 560.8 448 67.2
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.6e-157 558.5 345 80.0
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 4.6e-157 558.5 531 57.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.0e-156 557.4 485 63.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-156 557.0 462 66.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 3.0e-156 555.8 461 65.7
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.3e-155 552.4 443 67.9
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 9.7e-155 550.8 332 82.2
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.7e-154 550.1 401 71.3
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.4e-153 546.2 490 60.8
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.5e-152 543.5 469 64.8
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 1.3e-151 540.4 474 64.3
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 4.2e-150 535.4 458 65.9
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.7e-149 532.7 469 64.0
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 6.1e-149 531.6 459 63.6
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 7.9e-149 531.2 458 65.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 9.7e-147 524.2 432 65.5
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 6.3e-146 521.5 451 61.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.5e-144 515.8 431 67.5
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.2e-141 507.3 285 85.6
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.7e-141 506.1 458 58.7
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 8.0e-141 504.6 279 86.4
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.2e-140 501.9 458 62.2
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.2e-140 501.9 461 62.0
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.3e-138 497.3 403 66.5
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.3e-138 495.0 495 58.6
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.0e-136 490.0 331 71.9
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 9.4e-134 481.1 460 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.7e-130 470.3 330 68.5
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-130 469.9 472 55.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 9.1e-129 464.5 494 55.9
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.0e-127 458.8 395 62.5
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 5.2e-124 448.7 335 68.4
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.4e-123 446.0 338 69.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 6.3e-122 441.8 272 75.0
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.5e-118 427.9 348 63.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.6e-117 427.2 568 49.8
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.8e-117 426.4 441 56.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.9e-111 406.0 473 53.5
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.6e-111 404.8 434 55.3
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 4.0e-100 369.4 337 55.8
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.9e-100 368.2 327 55.0
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-98 363.6 287 64.8
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.1e-94 351.3 379 52.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.9e-82 309.3 164 93.3
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.8e-76 290.8 260 58.1
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.2e-57 226.9 473 41.4
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.8e-52 211.1 386 35.5
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.4e-39 168.3 252 44.4
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 5.7e-38 162.9 120 69.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.2e-35 155.2 342 33.6
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 5.7e-30 136.3 81 80.2
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.2e-27 128.6 130 53.1
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.6e-19 101.7 102 52.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 5.9e-19 99.8 102 51.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.7e-16 90.9 195 36.9
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.7e-13 81.6 181 37.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.8e-12 78.2 194 35.6


User provided reference genes

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