Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 8.4e-160 567.0 292 100.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.7e-99 366.7 195 95.9
C02p43970 Brassica napus HOM05D004931 ORTHO05D027277 3.0e-85 319.3 169 95.3
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.4e-34 151.0 82 93.9
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 9.3e-18 95.1 50 90.0
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 9.3e-18 95.1 50 90.0
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.6e-17 92.8 50 86.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 4.6e-17 92.8 62 75.8
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 6.0e-17 92.4 50 86.0
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 7.9e-17 92.0 50 88.0
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 7.9e-17 92.0 50 88.0
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 7.9e-17 92.0 50 88.0
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.0e-16 91.7 50 84.0
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.0e-16 91.7 50 84.0
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.3e-16 90.5 50 82.0
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 2.3e-16 90.5 50 82.0
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 2.3e-16 90.5 62 72.6
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 6.7e-16 89.0 50 80.0
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 7.4e-15 85.5 73 65.8
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 9.7e-15 85.1 62 69.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.1e-14 84.0 87 51.7
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.7e-14 83.2 69 63.8
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 8.2e-14 82.0 69 62.3
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 3.1e-13 80.1 70 58.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.1e-13 80.1 50 68.0
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 5.3e-13 79.3 67 61.2
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 5.3e-13 79.3 68 57.4
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 5.3e-13 79.3 74 54.1
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.3e-13 79.3 50 72.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 6.9e-13 79.0 69 60.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.9e-13 79.0 50 68.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 9.0e-13 78.6 87 46.0
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 9.0e-13 78.6 49 71.4
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 9.0e-13 78.6 67 55.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 9.0e-13 78.6 67 55.2
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 9.0e-13 78.6 87 48.3
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 9.0e-13 78.6 50 68.0
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.2e-12 78.2 87 47.1
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.2e-12 78.2 70 57.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.2e-12 78.2 67 59.7
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.5e-12 77.8 50 68.0
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.5e-12 77.8 87 46.0
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.5e-12 77.8 87 47.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.5e-12 77.8 51 68.6
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.0e-12 77.4 91 46.2
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 2.0e-12 77.4 75 54.7
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.0e-12 77.4 75 54.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 2.0e-12 77.4 62 62.9
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.0e-12 77.4 87 49.4
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.0e-12 77.4 87 46.0
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.6e-12 77.0 87 46.0
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.6e-12 77.0 70 52.9
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.6e-12 77.0 62 59.7
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.6e-12 77.0 50 66.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 2.6e-12 77.0 87 46.0
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 2.6e-12 77.0 50 66.0
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.6e-12 77.0 67 58.2
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.4e-12 76.6 87 47.1
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.4e-12 76.6 49 69.4
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.4e-12 76.6 49 69.4
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.4e-12 76.6 49 69.4
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.4e-12 76.6 92 46.7
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 3.4e-12 76.6 87 49.4
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.4e-12 76.6 72 51.4
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.4e-12 76.6 49 69.4
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.9e-12 75.9 62 58.1
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 5.9e-12 75.9 73 53.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 5.9e-12 75.9 53 66.0
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 5.9e-12 75.9 49 69.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 7.6e-12 75.5 62 59.7
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 7.6e-12 75.5 87 44.8
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 7.6e-12 75.5 74 55.4
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 7.6e-12 75.5 111 37.8
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 7.6e-12 75.5 87 48.3
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.0e-11 75.1 87 43.7
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.0e-11 75.1 50 66.0
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.0e-11 75.1 87 44.8
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.0e-11 75.1 67 59.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.0e-11 75.1 50 70.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.0e-11 75.1 49 69.4
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.3e-11 74.7 54 64.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.3e-11 74.7 87 46.0
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.7e-11 74.3 87 46.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.7e-11 74.3 49 65.3
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.7e-11 74.3 87 43.7
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.2e-11 73.9 87 44.8
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.2e-11 73.9 50 62.0
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.9e-11 73.6 70 52.9
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.9e-11 73.6 70 52.9
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.8e-11 73.2 73 50.7
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.8e-11 73.2 66 54.5
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 3.8e-11 73.2 87 46.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 3.8e-11 73.2 87 46.0
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 3.8e-11 73.2 87 46.0
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 5.0e-11 72.8 87 47.1
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 8.5e-11 72.0 87 43.7
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 8.5e-11 72.0 67 52.2
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.1e-10 71.6 49 63.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.4e-10 71.2 87 44.8
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.9e-10 70.9 63 55.6
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.9e-10 70.9 87 43.7
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.9e-10 70.9 87 43.7
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 2.5e-10 70.5 62 56.5
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.2e-10 70.1 84 45.2
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 4.2e-10 69.7 87 43.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 4.2e-10 69.7 87 43.7
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 7.2e-10 68.9 67 52.2
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 9.3e-10 68.6 74 51.4
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 9.3e-10 68.6 74 51.4
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 9.3e-10 68.6 54 63.0
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.2e-09 68.2 47 66.0
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.7e-09 67.0 49 63.3
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.6e-09 66.6 69 52.2
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.3e-08 64.7 74 51.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.9e-08 63.2 74 51.4
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.9e-08 63.2 67 50.7
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.5e-07 60.5 87 40.2
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.7e-07 59.3 74 45.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.3e-06 58.2 91 36.3
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.7e-06 56.6 67 49.3


User provided reference genes

Program Settings