Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.7e-306 1054.7 593 100.0
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 7.1e-190 667.9 393 100.0
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 3.9e-164 582.4 394 86.0
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 6.2e-162 575.1 396 89.4
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 2.1e-133 480.3 405 78.8
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 3.0e-116 423.3 416 64.2
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 6.1e-101 372.5 412 59.0
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 4.0e-92 343.2 426 62.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 7.3e-86 322.4 395 51.1
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 2.8e-85 320.5 162 100.0
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.6e-75 287.3 423 46.6
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 7.6e-67 259.2 440 45.7
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 6.6e-63 246.1 315 48.6
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.5e-46 191.8 509 31.6
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.2e-43 182.2 521 34.5
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 6.5e-42 176.4 490 30.6
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.9e-41 174.9 496 31.0
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 4.2e-41 173.7 496 29.8
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 4.2e-41 173.7 496 29.8
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 7.1e-41 172.9 460 31.3
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.2e-40 172.2 494 30.6
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.6e-40 171.8 494 29.8
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.1e-40 171.4 494 30.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 3.5e-40 170.6 521 33.0
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 8.7e-39 166.0 485 29.9
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 9.7e-38 162.5 471 30.6
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 9.7e-38 162.5 528 32.8
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.8e-37 161.0 434 36.6
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 4.1e-36 157.1 473 30.2
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 9.0e-36 156.0 480 30.0
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.4e-35 154.1 489 29.4
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 8.5e-34 149.4 469 34.3
C06p12260 Brassica napus HOM05D042146 ORTHO05D027157 9.1e-20 102.8 61 82.0
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.6e-19 101.3 335 29.3
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.2e-13 81.6 182 29.7
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.8e-13 81.3 65 70.8
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.8e-12 78.6 153 38.6
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 2.4e-12 78.2 78 61.5
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 3.1e-12 77.8 78 61.5
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 3.1e-12 77.8 78 61.5
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.2e-11 75.9 146 41.8
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 1.6e-11 75.5 67 65.7
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 3.5e-11 74.3 80 60.0
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 4.5e-11 73.9 67 64.2
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 4.5e-11 73.9 67 64.2
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 4.5e-11 73.9 67 64.2
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 7.7e-11 73.2 67 64.2
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.0e-10 72.8 80 57.5
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 1.0e-10 72.8 65 66.2
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 1.3e-10 72.4 65 64.6
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 1.7e-10 72.0 65 64.6
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 2.9e-10 71.2 65 64.6
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.9e-10 71.2 222 28.4
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.9e-10 71.2 65 61.5
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 3.2e-09 67.8 121 34.7
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 7.2e-09 66.6 65 58.5
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 7.2e-09 66.6 66 62.1
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.6e-08 65.5 126 36.5
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 2.7e-08 64.7 65 58.5
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 3.6e-08 64.3 67 58.2
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 4.7e-08 63.9 65 58.5
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 6.1e-08 63.5 65 56.9
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 6.1e-08 63.5 105 44.8
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 8.0e-08 63.2 65 56.9
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.0e-07 62.8 121 38.8
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 1.4e-07 62.4 66 59.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.8e-07 62.0 328 25.3
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 1.8e-07 62.0 114 39.5
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 2.3e-07 61.6 65 56.9
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 2.3e-07 61.6 65 56.9
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.3e-07 61.6 67 56.7
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 3.0e-07 61.2 65 56.9
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 3.0e-07 61.2 65 55.4
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 4.0e-07 60.8 65 56.9
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 4.0e-07 60.8 65 56.9
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 5.2e-07 60.5 328 24.7
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 6.8e-07 60.1 124 38.7
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 6.8e-07 60.1 65 53.8
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 6.8e-07 60.1 112 37.5
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 6.8e-07 60.1 65 56.9
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 8.8e-07 59.7 65 53.8
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 8.8e-07 59.7 65 56.9
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 8.8e-07 59.7 65 56.9
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 8.8e-07 59.7 65 56.9
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 1.2e-06 59.3 78 51.3
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 1.2e-06 59.3 65 55.4
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.2e-06 59.3 65 50.8
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 1.5e-06 58.9 65 55.4
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.5e-06 58.9 65 55.4
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.5e-06 58.9 110 38.2
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 2.0e-06 58.5 102 45.1
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 2.0e-06 58.5 102 45.1
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 2.0e-06 58.5 65 55.4
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 2.6e-06 58.2 65 55.4
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 2.6e-06 58.2 65 52.3
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 2.6e-06 58.2 65 55.4
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 2.6e-06 58.2 65 55.4
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.6e-06 58.2 65 55.4
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 3.4e-06 57.8 65 55.4
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 3.4e-06 57.8 102 45.1
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 3.4e-06 57.8 65 55.4
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 3.4e-06 57.8 77 48.1
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 4.4e-06 57.4 65 53.8
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 4.4e-06 57.4 65 55.4
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 4.4e-06 57.4 66 54.5
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 4.4e-06 57.4 78 44.9
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 4.4e-06 57.4 67 52.2
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 5.7e-06 57.0 67 55.2
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 5.7e-06 57.0 66 56.1
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 5.7e-06 57.0 65 52.3
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 5.7e-06 57.0 65 53.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 5.7e-06 57.0 174 28.2
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 5.7e-06 57.0 65 53.8
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 5.7e-06 57.0 65 53.8
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 7.5e-06 56.6 65 56.9
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 7.5e-06 56.6 65 52.3
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 9.7e-06 56.2 65 53.8
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 9.7e-06 56.2 66 54.5
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 9.7e-06 56.2 65 56.9
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 9.7e-06 56.2 65 53.8
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 9.7e-06 56.2 65 55.4


User provided reference genes

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