Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 7.5e-130 467.2 241 100.0
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 2.8e-129 465.3 241 99.6
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 2.8e-129 465.3 241 99.6
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.6e-119 433.0 244 93.0
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 5.9e-119 431.0 242 93.8
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.3e-110 403.3 244 88.5
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.1e-91 339.0 246 74.8
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 7.1e-88 327.8 249 72.7
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.6e-84 316.6 248 69.4
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.6e-84 316.6 255 70.2
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.0e-82 309.7 250 69.2
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 5.1e-78 295.0 254 65.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 4.3e-77 292.0 257 64.2
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 5.6e-77 291.6 257 63.4
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 2.8e-76 289.3 247 64.8
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.6e-76 288.9 256 64.1
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.1e-75 285.8 254 62.6
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 8.9e-75 284.3 250 65.2
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 8.9e-75 284.3 250 65.2
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 4.4e-74 282.0 256 62.1
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 4.4e-74 282.0 256 62.9
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 5.8e-74 281.6 257 62.6
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 2.1e-68 263.1 257 59.5
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 3.3e-61 239.2 249 53.4
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.1e-59 234.2 247 55.1
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.1e-59 234.2 245 53.9
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 6.9e-59 231.5 248 54.8
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.2e-58 230.7 250 53.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 2.6e-58 229.6 252 53.6
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.6e-58 229.6 250 53.2
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 4.5e-58 228.8 243 54.3
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 5.8e-58 228.4 250 53.2
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 5.8e-58 228.4 248 51.6
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.3e-57 227.3 250 52.4
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.3e-57 227.3 250 53.2
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.8e-57 225.7 250 52.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 1.4e-56 223.8 247 51.0
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.4e-56 223.8 251 51.8
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.9e-56 223.4 247 51.0
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 2.4e-56 223.0 251 51.8
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.4e-56 223.0 247 51.4
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 4.2e-56 222.2 248 49.6
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 7.1e-56 221.5 250 52.4
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 2.7e-55 219.5 256 52.7
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 4.6e-55 218.8 251 49.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 4.6e-55 218.8 235 51.5
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 6.0e-55 218.4 255 51.4
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 7.9e-55 218.0 250 51.2
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 7.9e-55 218.0 244 51.2
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.9e-55 218.0 254 50.4
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.0e-54 217.6 239 51.9
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 2.3e-54 216.5 245 50.6
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 2.3e-54 216.5 257 49.8
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.0e-54 216.1 243 50.2
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 3.0e-54 216.1 236 53.0
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 3.9e-54 215.7 251 48.6
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 5.1e-54 215.3 244 50.4
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 6.7e-54 214.9 243 49.0
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 8.7e-54 214.5 242 52.5
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 8.7e-54 214.5 251 48.2
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.1e-53 214.2 255 52.2
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.5e-53 213.8 254 50.4
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 1.5e-53 213.8 249 50.2
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.9e-53 213.4 246 51.2
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 3.3e-53 212.6 248 49.6
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 5.6e-53 211.8 251 47.8
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 5.6e-53 211.8 252 50.0
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.8e-52 209.5 255 49.8
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.8e-52 209.5 236 50.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.7e-52 209.1 246 50.0
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.7e-52 209.1 240 50.8
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.4e-51 206.5 252 48.0
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 3.1e-51 206.1 240 50.8
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 4.0e-51 205.7 246 48.8
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 9.0e-51 204.5 236 50.4
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.0e-51 204.5 239 49.4
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 9.0e-51 204.5 240 49.2
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 9.0e-51 204.5 251 49.4
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.4e-50 202.6 251 49.4
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 3.4e-50 202.6 249 49.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.5e-50 202.2 254 49.2
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 5.8e-50 201.8 223 51.6
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 7.6e-50 201.4 235 50.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.3e-49 200.7 250 48.0
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-49 200.3 248 47.6
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 1.7e-49 200.3 248 49.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 3.8e-49 199.1 238 49.2
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.8e-49 199.1 248 48.8
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.4e-48 197.2 241 47.7
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.5e-48 196.4 235 48.1
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 3.2e-48 196.1 243 48.1
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.2e-48 196.1 235 48.1
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 5.5e-48 195.3 241 47.7
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 7.1e-48 194.9 256 47.7
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 9.3e-48 194.5 248 47.6
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 9.3e-48 194.5 248 47.6
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 9.3e-48 194.5 233 49.8
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 4.6e-47 192.2 245 46.1
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.3e-46 190.7 223 51.1
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 1.8e-46 190.3 253 46.2
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 3.9e-46 189.1 236 45.8
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.9e-45 186.8 244 48.0
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 2.5e-45 186.4 233 50.6
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 2.1e-44 183.3 226 47.8
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 3.7e-44 182.6 238 47.1
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.4e-43 179.9 181 54.7
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 5.3e-43 178.7 248 45.6
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 3.4e-42 176.0 237 44.3
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.3e-41 174.1 124 74.2
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.2e-41 173.3 238 45.4
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 8.5e-41 171.4 251 43.0
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 3.1e-35 152.9 188 47.9
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.7e-33 147.1 199 43.7
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 6.5e-33 145.2 182 45.1
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 8.2e-28 128.3 123 56.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 5.0e-17 92.4 123 48.0
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.9e-16 90.5 197 33.0
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 3.2e-16 89.7 130 40.8
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 9.4e-16 88.2 231 33.8
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.7e-15 86.7 133 41.4
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 6.1e-15 85.5 174 35.1
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.8e-14 84.0 140 42.1
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 2.4e-11 73.6 98 42.9
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 9.1e-11 71.6 80 52.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.3e-09 67.8 77 50.6
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-09 67.4 107 40.2
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 7.2e-08 62.0 85 40.0
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.6e-07 60.8 52 51.9
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 5.2e-06 55.8 61 50.8


User provided reference genes

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