Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 5.3e-34 147.1 75 100.0
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 8.5e-32 139.8 75 96.0
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 1.2e-30 136.0 75 92.0
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 7.2e-15 83.6 47 97.9
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 1.2e-14 82.8 47 97.9
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 2.1e-14 82.0 47 95.7
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 2.7e-14 81.6 47 95.7
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 2.7e-14 81.6 47 95.7
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 2.7e-14 81.6 47 95.7
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 3.6e-14 81.3 47 95.7
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 4.7e-14 80.9 47 95.7
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 6.1e-14 80.5 47 93.6
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 8.0e-14 80.1 47 93.6
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 8.0e-14 80.1 47 93.6
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 8.0e-14 80.1 47 93.6
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 8.0e-14 80.1 47 93.6
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 8.0e-14 80.1 47 93.6
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 8.0e-14 80.1 47 93.6
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 4.0e-13 77.8 47 89.4
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 4.0e-13 77.8 47 89.4
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 4.0e-13 77.8 47 91.5
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 4.0e-13 77.8 48 93.8
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 4.0e-13 77.8 47 89.4
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 8.8e-13 76.6 45 93.3
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 1.2e-12 76.3 47 87.2
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 1.2e-12 76.3 45 91.1
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 2.6e-12 75.1 47 87.2
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 3.4e-12 74.7 47 93.6
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 6.3e-11 70.5 47 78.7
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 3.5e-09 64.7 46 73.9
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 4.5e-09 64.3 44 79.5
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 4.5e-09 64.3 44 79.5
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 7.7e-09 63.5 44 77.3
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 7.7e-09 63.5 45 77.8
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 7.7e-09 63.5 45 75.6
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 1.0e-08 63.2 44 77.3
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 1.0e-08 63.2 46 71.7
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 1.0e-08 63.2 44 77.3
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 1.0e-08 63.2 43 79.1
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.3e-08 62.8 44 75.0
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 79.1
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 1.3e-08 62.8 44 75.0
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 1.3e-08 62.8 44 77.3
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 1.3e-08 62.8 44 77.3
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.3e-08 62.8 45 77.8
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 81.4
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 81.4
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 81.4
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 81.4
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.3e-08 62.8 44 75.0
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 79.1
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 1.3e-08 62.8 46 71.7
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 1.3e-08 62.8 43 81.4
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 1.7e-08 62.4 43 76.7
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 1.7e-08 62.4 44 75.0
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.7e-08 62.4 43 79.1
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 1.7e-08 62.4 44 75.0
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 1.7e-08 62.4 44 77.3
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 1.7e-08 62.4 44 77.3
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.2e-08 62.0 44 75.0
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.2e-08 62.0 44 75.0
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 2.2e-08 62.0 43 79.1
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 2.9e-08 61.6 43 76.7
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 2.9e-08 61.6 44 77.3
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 3.8e-08 61.2 46 73.9
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 3.8e-08 61.2 43 76.7
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 3.8e-08 61.2 43 74.4
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 6.5e-08 60.5 44 75.0
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 6.5e-08 60.5 43 74.4
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 6.5e-08 60.5 43 74.4
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 6.5e-08 60.5 43 76.7
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 6.5e-08 60.5 49 67.3
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 6.5e-08 60.5 43 74.4
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 6.5e-08 60.5 44 75.0
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 6.5e-08 60.5 44 70.5
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 8.5e-08 60.1 44 75.0
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 8.5e-08 60.1 45 73.3
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 8.5e-08 60.1 45 73.3
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 8.5e-08 60.1 45 73.3
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 8.5e-08 60.1 43 74.4
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 8.5e-08 60.1 43 76.7
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 8.5e-08 60.1 43 76.7
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 8.5e-08 60.1 43 74.4
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 1.1e-07 59.7 43 76.7
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.1e-07 59.7 46 69.6
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 1.5e-07 59.3 49 67.3
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 1.5e-07 59.3 45 68.9
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 1.9e-07 58.9 43 74.4
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 1.9e-07 58.9 44 70.5
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 1.9e-07 58.9 44 70.5
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 1.9e-07 58.9 44 70.5
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 2.5e-07 58.5 44 72.7
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 2.5e-07 58.5 43 74.4
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 2.5e-07 58.5 44 72.7
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 3.2e-07 58.2 46 69.6
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 3.2e-07 58.2 44 72.7
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 4.2e-07 57.8 43 72.1
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 4.2e-07 57.8 44 72.7
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 69.8
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 5.5e-07 57.4 45 68.9
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 69.8
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 72.1
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 74.4
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 74.4
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 74.4
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 5.5e-07 57.4 43 74.4
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 9.4e-07 56.6 42 71.4
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 9.4e-07 56.6 44 68.2
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.6e-06 55.8 43 69.8
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.6e-06 55.8 43 69.8
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 2.1e-06 55.5 43 67.4
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 2.1e-06 55.5 43 67.4
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 2.1e-06 55.5 43 67.4
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 3.6e-06 54.7 43 67.4
BolC3t15627H Brassica oleracea HOM05D001639 ORTHO05D008660 4.7e-06 54.3 24 87.5


User provided reference genes

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