Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p10450 Brassica napus HOM05D005776 ORTHO05D007333 8.3e-70 266.9 136 100.0
BcaNung03515 Brassica carinata HOM05D005776 ORTHO05D007333 8.4e-30 134.0 99 70.7
Thhalv10026051m.g Eutrema salsugineum HOM05D005776 ORTHO05D007333 1.1e-29 133.7 107 68.2
A01p02000 Brassica napus HOM05D005776 ORTHO05D007333 1.4e-29 133.3 103 69.9
C01p02180 Brassica napus HOM05D005776 ORTHO05D007333 1.4e-29 133.3 103 69.9
BolC1t00210H Brassica oleracea HOM05D005776 ORTHO05D007333 1.4e-29 133.3 103 69.9
BraA01t00188Z Brassica rapa HOM05D005776 ORTHO05D007333 1.4e-29 133.3 103 69.9
Sp7g34590 Schrenkiella parvula HOM05D005776 ORTHO05D007333 3.2e-29 132.1 106 67.9
CARHR245300 Cardamine hirsuta HOM05D005776 ORTHO05D007333 1.0e-27 127.1 104 65.4
Carub.0007s0339 Capsella rubella HOM05D005776 ORTHO05D007333 5.1e-27 124.8 105 62.9
AL7G14000 Arabidopsis lyrata HOM05D005776 ORTHO05D007333 6.7e-27 124.4 116 58.6
AT4G37200 Arabidopsis thaliana HOM05D005776 ORTHO05D007333 6.3e-25 117.9 113 55.8
Aa31LG6G13780 Aethionema arabicum HOM05D005776 ORTHO05D007333 3.1e-24 115.5 113 54.9
Hund05302 Selenicereus undatus HOM05D005776 ORTHO05D007333 2.0e-23 112.8 101 57.4
Ah.10g034500 Amaranthus hybridus HOM05D000575 ORTHO05D004448 3.4e-23 112.1 126 49.2
Manes.12G094700 Manihot esculenta HOM05D005776 ORTHO05D007333 5.9e-23 111.3 101 57.4
THA.LOC104804218 Tarenaya hassleriana HOM05D005776 ORTHO05D007333 5.9e-23 111.3 112 56.2
CsaV3_6G042720 Cucumis sativus L. HOM05D005776 ORTHO05D007333 2.9e-22 109.0 92 62.0
Sed0000268 Sechium edule HOM05D005776 ORTHO05D007333 2.9e-22 109.0 92 62.0
MELO3C007510.2 Cucumis melo HOM05D005776 ORTHO05D007333 1.1e-21 107.1 98 58.2
ClCG01G016400 Citrullus lanatus HOM05D005776 ORTHO05D007333 1.4e-21 106.7 84 64.3
HanXRQChr12g0378471 Helianthus annuus HOM05D005776 ORTHO05D007333 3.2e-21 105.5 102 53.9
MD02G1158600 Malus domestica HOM05D005776 ORTHO05D007333 3.2e-21 105.5 102 55.9
TPR.G29855 Trifolium pratense HOM05D005776 ORTHO05D007333 3.2e-21 105.5 117 52.1
CANSAT25G0990 Cannabis sativa HOM05D005776 ORTHO05D007333 4.2e-21 105.1 118 50.0
AUR62009176 Chenopodium quinoa HOM05D005776 ORTHO05D007333 4.2e-21 105.1 94 57.4
AUR62022050 Chenopodium quinoa HOM05D005776 ORTHO05D007333 5.5e-21 104.8 94 57.4
Phvul.002G023500 Phaseolus vulgaris HOM05D005776 ORTHO05D007333 5.5e-21 104.8 103 56.3
Psat2g163800 Pisum sativum HOM05D005776 ORTHO05D007333 5.5e-21 104.8 101 55.4
Lj2g0005971 Lotus japonicus HOM05D005776 ORTHO05D007333 7.2e-21 104.4 78 66.7
Sopen07g033140 Solanum pennellii HOM05D005776 ORTHO05D007333 7.2e-21 104.4 106 54.7
Ca_24808_v3 Cicer arietinum L. HOM05D005776 ORTHO05D007333 9.4e-21 104.0 82 64.6
TAR628G1436 Trochodendron aralioides HOM05D005776 ORTHO05D007333 9.4e-21 104.0 106 52.8
HPP92_012224 Vanilla planifolia HOM05D005776 ORTHO05D007333 9.4e-21 104.0 84 58.3
COL.COLO4_07276 Corchorus olitorius HOM05D005776 ORTHO05D007333 1.2e-20 103.6 101 50.5
Gohir.D02G141600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.2e-20 103.6 103 54.4
Gorai.005G159700 Gossypium raimondii HOM05D005776 ORTHO05D007333 1.2e-20 103.6 103 54.4
Lj4A136T80 Lonicera japonica HOM05D005776 ORTHO05D007333 1.2e-20 103.6 108 52.8
arahy.Tifrunner.gnm1.ann1.41BUH4 Arachis hypogaea HOM05D005776 ORTHO05D007333 1.6e-20 103.2 84 61.9
Cpa.g.sc15.62 Carica papaya HOM05D005776 ORTHO05D007333 1.6e-20 103.2 93 54.8
Cc07_g19620 Coffea canephora HOM05D005776 ORTHO05D007333 1.6e-20 103.2 79 62.0
RcHm_v2.0_Chr2g0103261 Rosa chinensis HOM05D005776 ORTHO05D007333 1.6e-20 103.2 96 59.4
VMungo1215G2372 Vigna mungo HOM05D005776 ORTHO05D007333 1.6e-20 103.2 103 56.3
EL10Ac2g03922 Beta vulgaris HOM05D005776 ORTHO05D007333 2.1e-20 102.8 85 62.4
Oeu032924.1 Olea europaea HOM05D005776 ORTHO05D007333 2.1e-20 102.8 84 61.9
Aqoxy6G00958 Aquilegia oxysepala HOM05D005776 ORTHO05D007333 2.7e-20 102.4 102 53.9
arahy.Tifrunner.gnm1.ann1.TE9NQ7 Arachis hypogaea HOM05D005776 ORTHO05D007333 2.7e-20 102.4 78 64.1
Duzib251G0151 Durio zibethinus HOM05D005776 ORTHO05D007333 2.7e-20 102.4 101 52.5
Potri.007G034400 Populus trichocarpa HOM05D005776 ORTHO05D007333 2.7e-20 102.4 84 60.7
GSVIVG01003777001 Vitis vinifera HOM05D005776 ORTHO05D007333 2.7e-20 102.4 128 46.9
PGSC0003DMG400022206 Solanum tuberosum HOM05D005776 ORTHO05D007333 3.6e-20 102.1 106 53.8
Ciclev10026303m.g Citrus clementina HOM05D005776 ORTHO05D007333 4.6e-20 101.7 116 45.7
Sabra07G0030000 Salix brachista HOM05D005776 ORTHO05D007333 4.6e-20 101.7 121 47.9
Thecc.02G289200 Theobroma cacao HOM05D005776 ORTHO05D007333 4.6e-20 101.7 101 51.5
MD15G1273400 Malus domestica HOM05D005776 ORTHO05D007333 6.1e-20 101.3 114 50.0
QL06p044240 Quercus lobata HOM05D005776 ORTHO05D007333 6.1e-20 101.3 79 62.0
COL.COLO4_13087 Corchorus olitorius HOM05D005776 ORTHO05D007333 7.9e-20 100.9 105 49.5
Glyma.01G182500 Glycine max HOM05D005776 ORTHO05D007333 7.9e-20 100.9 99 51.5
Prupe.7G145200 Prunus persica HOM05D005776 ORTHO05D007333 7.9e-20 100.9 102 52.9
vmacro11025 Vaccinium macrocarpon HOM05D005776 ORTHO05D007333 7.9e-20 100.9 107 52.3
Lalb_Chr09g0333671 Lupinus albus HOM05D005776 ORTHO05D007333 1.0e-19 100.5 78 64.1
PGR102G0103 Punica granatum HOM05D005776 ORTHO05D007333 1.0e-19 100.5 78 61.5
Solyc07g064940.3 Solanum lycopersicum HOM05D005776 ORTHO05D007333 1.0e-19 100.5 106 53.8
ECA246G4011 Erigeron canadensis HOM05D005776 ORTHO05D007333 1.4e-19 100.1 104 52.9
FAN23G2656 Fragaria x ananassa HOM05D005776 ORTHO05D007333 1.4e-19 100.1 90 58.9
Gohir.A03G118800 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.4e-19 100.1 103 52.4
Hma1.2p1_0739F.1_g211290 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 1.4e-19 100.1 117 47.0
Hma1.2p1_0739F.1_g211300 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 1.4e-19 100.1 117 47.0
MSTRG.3404 Avicennia marina HOM05D005776 ORTHO05D007333 1.8e-19 99.8 96 55.2
CSS0016523 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 1.8e-19 99.8 107 50.5
CSS0036517 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 1.8e-19 99.8 107 50.5
Medtr5g018580 Medicago truncatula HOM05D005776 ORTHO05D007333 2.3e-19 99.4 82 59.8
Rhsim10G0126200 Rhododendron simsii HOM05D005776 ORTHO05D007333 2.3e-19 99.4 114 46.5
CAN.G337.59 Capsicum annuum HOM05D005776 ORTHO05D007333 3.0e-19 99.0 106 52.8
TWI09G1011 Tripterygium wilfordii HOM05D005776 ORTHO05D007333 3.9e-19 98.6 78 60.3
CiPaw.01G029000 Carya illinoinensis HOM05D005776 ORTHO05D007333 5.1e-19 98.2 100 55.0
FvH4_1g14520 Fragaria vesca HOM05D005776 ORTHO05D007333 5.1e-19 98.2 90 58.9
FAN26G3400 Fragaria x ananassa HOM05D005776 ORTHO05D007333 5.1e-19 98.2 90 58.9
FAN28G0587 Fragaria x ananassa HOM05D005776 ORTHO05D007333 5.1e-19 98.2 90 58.9
FAN19G1930 Fragaria x ananassa HOM05D005776 ORTHO05D007333 6.7e-19 97.8 90 58.9
SGA_v2.0_scaffold10G05128 Striga asiatica HOM05D005776 ORTHO05D007333 6.7e-19 97.8 85 60.0
Eucgr.H01941 Eucalyptus grandis HOM05D005776 ORTHO05D007333 8.8e-19 97.4 115 44.3
SalBow1G0426 Salvia bowleyana HOM05D005776 ORTHO05D007333 8.8e-19 97.4 85 60.0
SalBow1G6751 Salvia bowleyana HOM05D005776 ORTHO05D007333 8.8e-19 97.4 85 60.0
Actinidia12087 Actinidia chinensis HOM05D005776 ORTHO05D007333 1.5e-18 96.7 113 45.1
Haze_15167 Corylus avellana HOM05D005776 ORTHO05D007333 1.5e-18 96.7 78 59.0
Lsat_1_v5_gn_3_94020 Lactuca sativa HOM05D005776 ORTHO05D007333 1.5e-18 96.7 78 61.5
Cfa004232 Carpinus fangiana HOM05D005776 ORTHO05D007333 2.5e-18 95.9 78 59.0
Cfa017515 Carpinus fangiana HOM05D005776 ORTHO05D007333 2.5e-18 95.9 78 59.0
CDE02G0814 Ceratophyllum demersum HOM05D005776 ORTHO05D007333 2.5e-18 95.9 76 63.2
Nitab4.5_0002826g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 2.5e-18 95.9 104 52.9
Peaxi162Scf00235g00723 Petunia axillaris HOM05D005776 ORTHO05D007333 2.5e-18 95.9 110 50.0
unitig_578.g16073 Utricularia gibba HOM05D005776 ORTHO05D007333 3.3e-18 95.5 78 60.3
Migut.K00840 Erythranthe guttata HOM05D005776 ORTHO05D007333 1.3e-17 93.6 96 53.1
Nitab4.5_0000984g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 1.7e-17 93.2 104 51.0
Duzib268G1673 Durio zibethinus HOM05D005776 ORTHO05D007333 2.8e-17 92.4 107 48.6
ATR0733G088 Amborella trichopoda HOM05D005776 ORTHO05D007333 3.7e-17 92.0 75 57.3
Os03g0767500 Oryza sativa ssp. japonica HOM05D005776 ORTHO05D007333 2.4e-16 89.4 85 56.5
Zm00001eb213990 Zea mays HOM05D005776 ORTHO05D007333 3.1e-16 89.0 79 57.0
MBI16_g29183_MAGBIO Magnolia biondii HOM05D005776 ORTHO05D007333 6.9e-16 87.8 99 47.5
PSO675G1056 Papaver somniferum HOM05D005776 ORTHO05D007333 4.5e-15 85.1 108 46.3
PSO541G0480 Papaver somniferum HOM05D001143 ORTHO05D007333 7.7e-15 84.3 103 45.6
Gohir.D02G142060 Gossypium hirsutum HOM05D005776 ORTHO05D007333 3.2e-13 79.0 63 60.3
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 5.5e-13 78.2 128 38.3
Sc15g0005670 Simmondsia chinensis HOM05D005776 ORTHO05D007333 1.2e-12 77.0 58 62.1
AagrBONN_evm.TU.Sc2ySwM_344.5430 Anthoceros agrestis HOM05D005776 ORTHO05D007333 7.9e-12 74.3 83 47.0
Gorai.005G159300 Gossypium raimondii HOM05D005776 ORTHO05D007333 1.8e-11 73.2 58 60.3
Lsat_1_v5_gn_5_160121 Lactuca sativa HOM05D005776 ORTHO05D007333 8.8e-11 70.9 66 57.6
SMO329G0044 Selaginella moellendorffii HOM05D005776 ORTHO05D007333 8.8e-11 70.9 71 50.7
Glyma.11G060800 Glycine max HOM05D005776 ORTHO05D007333 2.6e-10 69.3 31 90.3
Mapoly0011s0067 Marchantia polymorpha HOM05D005776 ORTHO05D007333 2.6e-10 69.3 100 43.0
Nn6g32162 Nelumbo nucifera HOM05D005776 ORTHO05D007333 4.4e-10 68.6 31 90.3
Gohir.A03G118600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.3e-09 67.0 37 78.4
Glyma.02G061600 Glycine max HOM05D005776 ORTHO05D035967 2.2e-09 66.2 99 40.4
MD17G1248400 Malus domestica HOM05D005776 ORTHO05D007333 2.2e-09 66.2 33 78.8
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 4.8e-09 65.1 73 46.6
MELO3C026070.2 Cucumis melo HOM05D005776 ORTHO05D007333 1.8e-08 63.2 82 47.6
MCO15G478 Micromonas commoda HOM05D005776 ORTHO05D007333 4.1e-08 62.0 69 46.4
Zm00001eb226480 Zea mays HOM05D001594 ORTHO05D002862 7.0e-08 61.2 31 80.6
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 9.1e-08 60.8 73 43.8
TAR625G0250 Trochodendron aralioides HOM05D005776 ORTHO05D007333 2.6e-07 59.3 25 92.0


User provided reference genes

Program Settings