Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 0.0e+00 1167.1 627 100.0
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 0.0e+00 1164.8 627 99.7
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 0.0e+00 1132.5 627 97.6
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 0.0e+00 1114.0 632 94.1
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 0.0e+00 1085.5 634 92.3
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 5.0e-287 990.7 656 81.2
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 6.4e-282 973.8 658 79.6
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 6.6e-279 963.8 655 81.2
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 6.8e-276 953.7 656 77.7
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 2.4e-273 945.3 655 78.6
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 2.1e-269 932.2 664 76.8
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.4e-257 892.9 658 73.6
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.5e-214 750.0 673 63.4
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.7e-198 694.9 695 60.6
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.2e-197 693.0 694 56.9
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.1e-196 690.6 676 61.1
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 2.7e-195 686.0 695 59.9
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.0e-194 681.8 678 59.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.5e-193 680.2 706 57.8
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.2e-192 677.2 700 57.0
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.1e-192 676.4 702 59.3
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 8.0e-192 674.5 692 58.8
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 2.8e-189 666.0 693 55.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.8e-189 666.0 671 57.2
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.8e-188 663.3 686 55.4
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 9.1e-188 661.0 690 56.7
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 9.1e-188 661.0 711 56.0
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.6e-187 660.2 709 55.7
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.7e-186 656.8 695 57.1
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.7e-186 656.8 701 57.5
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.3e-186 656.4 688 56.7
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 5.0e-186 655.2 691 56.6
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.9e-185 653.3 686 55.0
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.3e-185 652.5 690 56.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 9.5e-185 651.0 713 55.4
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 9.5e-185 651.0 678 58.4
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.1e-184 649.8 690 57.0
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 6.1e-184 648.3 674 55.3
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 6.1e-184 648.3 685 55.6
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 6.1e-184 648.3 714 56.4
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.0e-183 647.5 686 56.0
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.4e-183 647.1 691 54.8
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.8e-183 646.7 699 54.8
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 3.0e-183 646.0 690 55.1
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 5.2e-183 645.2 689 55.4
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.9e-183 644.4 690 55.1
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.0e-182 643.3 716 53.9
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.6e-182 642.9 705 53.2
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 3.4e-182 642.5 689 55.0
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.3e-181 640.6 559 60.8
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 8.3e-181 637.9 717 56.3
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 7.0e-180 634.8 687 53.9
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 2.0e-179 633.3 694 53.7
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.3e-178 630.6 706 54.8
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 1.1e-177 627.5 693 54.5
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.5e-177 627.1 695 56.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.5e-177 627.1 701 52.8
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 3.3e-177 625.9 689 57.2
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 5.6e-177 625.2 660 58.6
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.6e-177 625.2 685 55.6
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 8.0e-176 621.3 693 54.0
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.0e-175 620.9 700 53.0
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 6.8e-175 618.2 693 56.7
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.3e-173 614.0 684 57.0
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 2.2e-173 613.2 672 56.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 4.9e-173 612.1 703 52.1
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 6.4e-173 611.7 675 55.9
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.1e-172 610.9 690 53.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.9e-172 610.1 692 55.5
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 5.4e-172 608.6 734 52.3
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 5.4e-172 608.6 718 51.8
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 9.2e-172 607.8 684 56.6
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.0e-171 606.7 694 53.2
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.6e-171 605.5 677 56.4
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.0e-170 602.8 607 55.8
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 9.5e-169 597.8 664 54.8
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 4.0e-167 592.4 671 55.0
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 6.8e-167 591.7 690 51.7
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 8.9e-167 591.3 681 53.6
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.3e-165 587.4 659 54.3
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 6.4e-165 585.1 681 53.5
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.1e-164 582.4 672 55.4
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 9.2e-164 581.3 688 54.9
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 3.0e-162 576.2 685 54.3
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.2e-160 570.9 710 54.4
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.6e-160 570.5 650 56.0
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 4.7e-160 568.9 692 50.7
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 2.3e-159 566.6 586 56.1
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.2e-158 564.3 668 52.8
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 2.6e-158 563.1 545 57.4
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.2e-157 560.1 698 49.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.2e-155 554.3 584 55.8
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 2.1e-155 553.5 636 55.5
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 2.7e-155 553.1 558 56.1
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 4.6e-155 552.4 660 53.2
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 1.5e-153 547.4 558 55.9
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.2e-152 544.3 587 55.0
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.6e-150 535.0 543 55.1
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.7e-149 533.9 529 56.5
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.9e-148 530.4 609 55.5
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.9e-148 530.4 743 49.9
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.0e-143 512.7 528 54.9
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.9e-141 506.5 529 55.0
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 4.3e-137 492.7 540 56.7
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 5.5e-132 475.7 543 51.9
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.1e-129 468.0 590 48.5
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 2.5e-129 466.8 655 44.4
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 4.9e-125 452.6 468 54.9
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 7.9e-115 418.7 440 57.3
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 1.0e-114 418.3 585 47.2
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.1e-103 381.7 372 54.6
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 9.1e-103 378.6 530 44.7
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 9.4e-100 368.6 347 57.9
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 1.6e-94 351.3 311 61.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 3.0e-90 337.0 319 56.7
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 1.1e-87 328.6 364 58.5
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.0e-85 322.0 357 54.6
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 2.7e-83 313.9 315 56.2
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 3.0e-82 310.5 793 32.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 7.5e-81 305.8 818 31.4
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 8.0e-75 285.8 363 47.1
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.8e-63 248.1 327 55.0
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 2.7e-62 244.2 364 42.3
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.7e-56 224.9 265 50.9
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-55 221.5 321 53.0
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.0e-53 215.7 412 37.9
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 3.4e-49 200.7 142 73.2
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 4.4e-49 200.3 262 53.1
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.2e-41 175.6 210 49.0
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.9e-39 168.3 241 44.0
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.2e-39 167.5 125 70.4
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.6e-38 165.2 179 48.0
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 1.1e-31 142.5 133 59.4
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.4e-31 141.4 99 74.7
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 7.3e-28 129.8 177 44.1
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 7.9e-22 109.8 394 26.6
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 8.1e-11 73.2 87 47.1
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 4.0e-10 70.9 133 54.9
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 8.4e-08 63.2 62 56.5
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.4e-07 62.4 52 53.8
MELO3C009704.2 Cucumis melo HOM05D001562 ORTHO05D001437 7.1e-07 60.1 147 28.6
CsaV3_3G039620 Cucumis sativus L. HOM05D001562 ORTHO05D001437 7.1e-07 60.1 147 28.6


User provided reference genes

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