Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p07500 Brassica napus HOM05D001817 ORTHO05D001647 5.3e-56 220.7 106 100.0
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 4.8e-49 197.6 105 91.4
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 2.7e-47 191.8 105 87.6
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 4.2e-45 184.5 105 81.9
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 6.1e-44 180.6 105 79.0
A01p06200 Brassica napus HOM05D001817 ORTHO05D001647 3.4e-42 174.9 105 77.1
C01p07490 Brassica napus HOM05D001817 ORTHO05D001647 4.9e-41 171.0 105 78.1
A01p06730 Brassica napus HOM05D001817 ORTHO05D001647 1.2e-39 166.4 107 75.7
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 1.5e-37 159.5 86 87.2
A01p06190 Brassica napus HOM05D001817 ORTHO05D001647 5.6e-37 157.5 85 87.1
C01p06830 Brassica napus HOM05D001817 ORTHO05D001647 5.6e-37 157.5 85 87.1
BcaC09g51932 Brassica carinata HOM05D001817 ORTHO05D001647 7.0e-32 140.6 92 72.8
A01p06740 Brassica napus HOM05D001817 ORTHO05D001647 1.6e-28 129.4 65 93.8
Thhalv10001075m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.7e-23 112.1 107 53.3
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 2.3e-22 109.0 102 52.0
AL7G19750 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 3.0e-22 108.6 107 51.4
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 5.0e-22 107.8 103 50.5
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 5.0e-22 107.8 103 50.5
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 1.5e-21 106.3 103 49.5
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 1.5e-21 106.3 103 49.5
AT4G32100 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 1.9e-21 105.9 106 54.7
Sp2g10660 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.3e-21 104.8 104 52.9
AL7G19790 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 8.1e-20 100.5 108 53.7
AT4G32105 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 1.4e-19 99.8 109 50.5
AT4G32110 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 1.4e-19 99.8 109 50.5
Carub.0007s0845 Capsella rubella HOM05D001817 ORTHO05D001647 1.2e-18 96.7 108 47.2
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.6e-18 95.5 104 43.3
CARHR240020 Cardamine hirsuta HOM05D001817 ORTHO05D001647 5.8e-18 94.4 110 50.9
Thhalv10027554m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 9.8e-18 93.6 107 48.6
BolC1t00680H Brassica oleracea HOM05D001817 ORTHO05D001647 2.9e-17 92.0 118 43.2
Thhalv10027525m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 4.9e-17 91.3 115 48.7
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 2.4e-16 89.0 88 47.7
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 1.6e-15 86.3 101 42.6
AL7G19780 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 2.7e-15 85.5 79 53.2
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 7.8e-15 84.0 103 41.7
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-14 83.6 87 48.3
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-14 83.6 87 48.3
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-14 83.6 87 48.3
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 1.7e-14 82.8 87 43.7
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 1.7e-14 82.8 87 43.7
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.3e-14 82.4 93 43.0
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 6.6e-14 80.9 100 42.0
Sp7g29900 Schrenkiella parvula HOM05D001817 ORTHO05D001647 6.6e-14 80.9 117 42.7
BcaB07g30432 Brassica carinata HOM05D001817 ORTHO05D001647 8.6e-14 80.5 104 41.3
BcaC03g16784 Brassica carinata HOM05D001817 ORTHO05D001647 1.9e-13 79.3 104 44.2
BcaB07g30433 Brassica carinata HOM05D001817 ORTHO05D001647 2.5e-13 79.0 104 43.3
C02p46550 Brassica napus HOM05D001817 ORTHO05D001647 2.5e-13 79.0 104 44.2
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 2.5e-13 79.0 107 40.2
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.3e-13 78.2 80 46.2
A02p29320 Brassica napus HOM05D001817 ORTHO05D001647 5.6e-13 77.8 103 41.7
BcaC03g16785 Brassica carinata HOM05D001817 ORTHO05D001647 7.3e-13 77.4 103 41.7
C02p46580 Brassica napus HOM05D001817 ORTHO05D001647 7.3e-13 77.4 103 41.7
Thhalv10001150m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 9.5e-13 77.0 77 51.9
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 9.5e-13 77.0 78 46.2
A02p29330 Brassica napus HOM05D001817 ORTHO05D001647 1.2e-12 76.6 103 40.8
A02p29300 Brassica napus HOM05D001817 ORTHO05D001647 2.1e-12 75.9 104 43.3
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 2.1e-12 75.9 107 40.2
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 2.1e-12 75.9 95 41.1
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 8.1e-12 73.9 99 39.4
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 1.1e-11 73.6 87 40.2
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.1e-11 73.6 85 38.8
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 1.4e-11 73.2 106 38.7
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 4.0e-11 71.6 97 38.1
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 4.0e-11 71.6 88 40.9
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 5.2e-11 71.2 102 35.3
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 6.8e-11 70.9 82 40.2
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 8.9e-11 70.5 100 35.0
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 8.9e-11 70.5 100 35.0
Actinidia22324 Actinidia chinensis HOM05D001817 ORTHO05D001647 1.5e-10 69.7 76 36.8
Medtr1g049240 Medicago truncatula HOM05D001817 ORTHO05D001647 1.5e-10 69.7 105 35.2
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 2.6e-10 68.9 106 38.7
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 2.6e-10 68.9 106 38.7
SpUn0983_0020 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.6e-10 68.9 81 44.4
C02p46590 Brassica napus HOM05D001817 ORTHO05D028283 3.4e-10 68.6 89 41.6
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.4e-10 68.6 105 33.3
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 3.4e-10 68.6 85 36.5
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 4.4e-10 68.2 92 38.0
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 4.4e-10 68.2 97 34.0
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 7.6e-10 67.4 105 32.4
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 7.6e-10 67.4 85 36.5
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 7.6e-10 67.4 101 34.7
CARHR239990 Cardamine hirsuta HOM05D001817 ORTHO05D001647 9.9e-10 67.0 88 37.5
FAN24G3294 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.3e-09 66.6 101 39.6
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 1.3e-09 66.6 92 37.0
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 1.7e-09 66.2 101 35.6
FAN04G1340 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.7e-09 66.2 88 36.4
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.7e-09 66.2 88 36.4
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.7e-09 66.2 88 36.4
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.7e-09 66.2 88 36.4
Glyma.09G085400 Glycine max HOM05D001817 ORTHO05D001647 2.2e-09 65.9 91 37.4
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.2e-09 65.9 103 35.0
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 2.9e-09 65.5 86 36.0
Lalb_Chr07g0186891 Lupinus albus HOM05D001817 ORTHO05D001647 2.9e-09 65.5 93 36.6
FvH4_2g28701 Fragaria vesca HOM05D001817 ORTHO05D001647 3.8e-09 65.1 101 38.6
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 3.8e-09 65.1 88 36.4
Prupe.1G484200 Prunus persica HOM05D001817 ORTHO05D001647 3.8e-09 65.1 83 34.9
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 4.9e-09 64.7 90 40.0
Eucgr.C02739 Eucalyptus grandis HOM05D001817 ORTHO05D001647 4.9e-09 64.7 87 34.5
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 4.9e-09 64.7 91 36.3
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 6.4e-09 64.3 92 35.9
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 8.4e-09 63.9 106 33.0
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 8.4e-09 63.9 101 31.7
BraA03t15168Z Brassica rapa HOM05D001817 ORTHO05D001647 1.1e-08 63.5 90 35.6
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 1.1e-08 63.5 86 37.2
CARHR240010 Cardamine hirsuta HOM05D001817 ORTHO05D001647 1.4e-08 63.2 62 53.2
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.4e-08 63.2 84 36.9
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.9e-08 62.8 80 38.8
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.9e-08 62.8 107 33.6
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 1.9e-08 62.8 87 36.8
A01p06720 Brassica napus HOM05D001817 ORTHO05D001647 2.4e-08 62.4 88 34.1
C01p07480 Brassica napus HOM05D001817 ORTHO05D001647 2.4e-08 62.4 88 34.1
BolC1t00731H Brassica oleracea HOM05D001817 ORTHO05D001647 2.4e-08 62.4 88 34.1
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.4e-08 62.4 88 35.2
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 2.4e-08 62.4 107 33.6
VMungo0464G0399 Vigna mungo HOM05D001817 ORTHO05D001647 2.4e-08 62.4 80 35.0
A03p61240 Brassica napus HOM05D001817 ORTHO05D001647 3.2e-08 62.0 90 34.4
MD15G1128900 Malus domestica HOM05D001817 ORTHO05D001647 3.2e-08 62.0 69 34.8
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 4.1e-08 61.6 101 33.7
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 4.1e-08 61.6 97 33.0
C07p59090 Brassica napus HOM05D001817 ORTHO05D001647 5.4e-08 61.2 90 34.4
BolC7t46357H Brassica oleracea HOM05D001817 ORTHO05D001647 5.4e-08 61.2 90 34.4
Medtr2g063010 Medicago truncatula HOM05D001817 ORTHO05D001647 5.4e-08 61.2 107 33.6
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 5.4e-08 61.2 99 28.3
Sp2g10650 Schrenkiella parvula HOM05D001817 ORTHO05D001647 5.4e-08 61.2 50 52.0
Hund04268 Selenicereus undatus HOM05D008125 ORTHO05D010359 5.4e-08 61.2 100 34.0
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 9.2e-08 60.5 105 36.2
SpUn0983_0010 Schrenkiella parvula HOM05D001817 ORTHO05D001647 9.2e-08 60.5 56 51.8
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 9.2e-08 60.5 92 32.6
Phvul.009G216700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.2e-07 60.1 107 34.6
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 1.2e-07 60.1 92 32.6
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 2.1e-07 59.3 82 30.5
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 2.7e-07 58.9 83 38.6
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 2.7e-07 58.9 97 35.1
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 2.7e-07 58.9 101 31.7
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.7e-07 58.9 85 38.8
Phvul.009G216600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.7e-07 58.9 92 33.7
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 2.7e-07 58.9 87 34.5
Lalb_Chr21g0316211 Lupinus albus HOM05D001817 ORTHO05D001647 3.5e-07 58.5 82 35.4
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 3.5e-07 58.5 89 33.7
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 3.5e-07 58.5 101 30.7
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 4.6e-07 58.2 84 29.8
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 4.6e-07 58.2 96 32.3
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 4.6e-07 58.2 100 33.0
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 6.0e-07 57.8 92 28.3
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 6.0e-07 57.8 83 36.1
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 6.0e-07 57.8 82 32.9
BcaNung03137 Brassica carinata HOM05D001817 ORTHO05D001647 7.8e-07 57.4 88 33.0
BolC2t10708H Brassica oleracea HOM05D001817 ORTHO05D001647 7.8e-07 57.4 65 43.1
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 7.8e-07 57.4 100 32.0
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 7.8e-07 57.4 86 33.7
A01p06210 Brassica napus HOM05D001817 ORTHO05D001647 1.0e-06 57.0 88 33.0
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.0e-06 57.0 91 33.0
BcaC09g51998 Brassica carinata HOM05D001817 ORTHO05D001647 1.3e-06 56.6 88 33.0
C01p06850 Brassica napus HOM05D001817 ORTHO05D001647 1.3e-06 56.6 88 33.0
BraA01t00588Z Brassica rapa HOM05D001817 ORTHO05D001647 1.3e-06 56.6 88 33.0
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 1.3e-06 56.6 78 35.9
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 1.3e-06 56.6 83 37.3
Sc06g0000520 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.3e-06 56.6 94 29.8
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.3e-06 56.6 92 32.6
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.7e-06 56.2 83 36.1
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 2.3e-06 55.8 82 31.7
BcaC09g51933 Brassica carinata HOM05D000025 ORTHO05D001647 2.3e-06 55.8 69 33.3
BraA02t07960Z Brassica rapa HOM05D001817 ORTHO05D001647 2.3e-06 55.8 65 41.5
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 2.3e-06 55.8 107 29.9
BraA01t00629Z Brassica rapa HOM05D001817 ORTHO05D001647 3.0e-06 55.5 40 77.5
Eucgr.C01626 Eucalyptus grandis HOM05D001817 ORTHO05D001647 3.0e-06 55.5 67 37.3
Thhalv10009797m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 3.0e-06 55.5 89 32.6
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.0e-06 55.5 73 35.6
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 3.9e-06 55.1 101 32.7
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.9e-06 55.1 101 32.7
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 3.9e-06 55.1 87 33.3
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 3.9e-06 55.1 107 32.7
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 5.1e-06 54.7 107 30.8
arahy.Tifrunner.gnm1.ann1.36N5BX Arachis hypogaea HOM05D001817 ORTHO05D001647 6.6e-06 54.3 88 33.0
Dinv24980 Davidia involucrata HOM05D001817 ORTHO05D001647 6.6e-06 54.3 87 32.2
PSO675G0727 Papaver somniferum HOM05D001817 ORTHO05D001647 6.6e-06 54.3 98 31.6
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 6.6e-06 54.3 99 32.3
TPR.G3595 Trifolium pratense HOM05D001817 ORTHO05D001647 6.6e-06 54.3 89 33.7
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 6.6e-06 54.3 93 31.2
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 6.6e-06 54.3 93 31.2
Glyma.05G150900 Glycine max HOM05D001817 ORTHO05D001647 8.6e-06 53.9 99 30.3
Phvul.001G045800 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 8.6e-06 53.9 92 32.6
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 8.6e-06 53.9 69 34.8
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 8.6e-06 53.9 101 29.7


User provided reference genes

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