Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 0.0e+00 1607.0 1058 100.0
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 0.0e+00 1597.8 1058 99.6
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 0.0e+00 1513.8 1019 99.4
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 0.0e+00 1438.3 1061 93.8
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 0.0e+00 1436.8 1056 93.2
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 0.0e+00 1419.1 1069 89.2
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 0.0e+00 1317.4 1081 84.9
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 0.0e+00 1301.2 1062 86.2
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 0.0e+00 1262.7 1063 84.9
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 0.0e+00 1252.3 1082 82.3
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 0.0e+00 1241.5 1063 83.4
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 0.0e+00 1100.1 1077 75.2
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 2.9e-303 1045.4 914 86.8
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 6.3e-274 948.0 1105 68.0
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 6.1e-269 931.4 1101 67.2
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.4e-268 930.2 1110 66.8
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.6e-267 926.0 1110 66.2
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 4.9e-266 921.8 1079 66.6
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 4.9e-266 921.8 1075 67.6
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.6e-264 916.8 1108 66.0
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.7e-264 916.0 1110 65.9
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.7e-263 913.3 1056 66.6
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 2.8e-261 906.0 1059 66.4
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 3.6e-261 905.6 1068 68.3
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 3.6e-261 905.6 1059 67.0
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 4.7e-261 905.2 1059 68.0
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 9.8e-259 897.5 1105 66.9
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.3e-258 897.1 1126 65.5
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.7e-258 896.7 1098 66.4
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 2.9e-258 896.0 1080 65.8
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 4.9e-258 895.2 1060 67.4
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.4e-257 892.9 1081 66.3
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 4.1e-257 892.1 1063 65.9
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 2.0e-256 889.8 1115 65.5
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 5.9e-256 888.3 1069 66.3
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 5.9e-256 888.3 1076 65.4
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 5.9e-256 888.3 1065 66.5
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 7.8e-256 887.9 1073 66.3
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.3e-255 887.1 1078 66.0
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 1.7e-255 886.7 1063 67.6
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.9e-255 885.6 1070 66.2
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.9e-255 885.6 1070 66.2
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 6.6e-255 884.8 1064 67.0
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 3.3e-254 882.5 1070 66.7
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 5.6e-254 881.7 1078 65.5
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 9.5e-254 880.9 1072 66.7
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 1.4e-252 877.1 1071 65.6
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.4e-252 877.1 1117 65.9
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 5.2e-252 875.2 1062 65.4
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 8.9e-252 874.4 1084 65.7
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 3.4e-251 872.5 1071 64.9
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.2e-249 865.9 1069 66.7
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 4.1e-249 865.5 1112 64.9
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 5.4e-249 865.1 1052 66.2
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 3.5e-248 862.4 1060 64.5
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.7e-247 860.1 1068 66.7
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.7e-247 860.1 1059 65.4
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.0e-247 859.4 1065 54.5
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 3.9e-247 859.0 1062 65.3
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 8.6e-247 857.8 1073 65.1
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 2.1e-245 853.2 1108 65.0
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 2.8e-245 852.8 1070 64.7
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.1e-244 850.9 1055 65.1
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 8.9e-244 847.8 1080 64.9
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 3.4e-243 845.9 1057 65.1
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 2.1e-240 836.6 1085 65.1
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.1e-240 836.6 1073 65.4
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.7e-240 836.3 1056 66.4
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.0e-240 835.1 1085 64.9
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 7.8e-240 834.7 1083 63.5
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.3e-239 833.9 1107 63.1
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 8.6e-239 831.2 1059 64.4
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 7.6e-235 818.1 1066 64.0
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 9.9e-235 817.8 1063 63.1
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.3e-234 817.4 1055 63.0
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 3.5e-232 809.3 1056 65.0
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 2.3e-231 806.6 1059 62.6
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 2.3e-231 806.6 1152 43.8
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.9e-231 805.8 1074 64.2
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.9e-230 803.5 1074 63.9
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 9.6e-230 801.2 1059 62.2
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 4.7e-229 798.9 1225 41.9
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 8.1e-229 798.1 1056 62.7
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 4.0e-228 795.8 1079 56.6
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.2e-227 794.3 1068 61.8
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 4.9e-226 788.9 536 69.6
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 4.2e-225 785.8 1069 62.0
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.0e-223 781.2 1072 60.7
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 5.6e-222 775.4 1061 63.1
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 4.0e-220 769.2 486 75.5
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.1e-217 761.1 537 67.6
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 3.2e-217 759.6 537 69.1
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 2.2e-210 736.9 907 68.2
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 3.2e-209 733.0 1069 61.1
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 4.2e-209 732.6 1007 58.4
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 2.9e-202 709.9 490 69.8
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 6.5e-202 708.8 1058 56.2
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.5e-201 705.7 826 60.5
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 9.3e-201 704.9 1057 52.9
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 5.1e-199 699.1 927 66.7
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 5.1e-191 672.5 703 81.7
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 1.5e-190 671.0 1053 58.0
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.8e-175 620.9 484 63.0
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 9.4e-169 598.6 894 49.2
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.6e-152 544.7 989 51.4
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.9e-141 507.3 849 62.1
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.0e-138 498.8 1047 48.5
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 1.0e-135 488.8 893 43.2
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.7e-130 471.5 438 57.1
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 9.5e-129 465.7 1057 41.7
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 5.6e-121 439.9 802 62.7
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 2.7e-107 394.4 254 70.1
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 6.2e-96 356.7 538 38.3
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-89 334.0 176 91.5
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 3.8e-85 320.9 203 71.9
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 3.0e-82 311.2 206 68.9
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 2.2e-72 278.5 449 37.2
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.8e-66 258.8 351 47.9
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 1.3e-64 252.7 133 88.7
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 2.4e-63 248.4 343 46.4
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 1.0e-58 233.0 267 50.6
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 4.4e-49 201.1 130 80.0
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 9.7e-49 199.9 130 79.2
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.2e-48 198.7 319 43.6
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 4.8e-48 197.6 890 35.6
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 9.1e-47 193.4 347 42.4
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.8e-39 169.1 93 90.3
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 2.4e-39 168.7 191 50.8
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 7.0e-39 167.2 99 77.8
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.2e-33 149.8 93 76.3
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.5e-33 147.1 109 69.7
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.7e-32 146.0 93 73.1
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.7e-32 146.0 185 44.3
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.0e-30 139.0 134 64.9
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 2.1e-27 129.0 121 58.7
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.3e-24 119.8 75 66.7
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 2.9e-24 118.6 76 77.6
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 4.7e-19 101.3 146 45.9
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.5e-17 96.3 133 41.4
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 2.1e-11 75.9 120 36.7
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 4.9e-08 64.7 170 31.2
CSS0012173 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.4e-07 61.2 61 50.8
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 7.1e-07 60.8 49 51.0
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.6e-06 58.2 43 65.1


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