Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.7e-47 192.2 90 100.0
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.2e-33 144.8 74 93.2
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.2e-33 144.8 74 93.2
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.2e-33 144.8 74 93.2
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 3.2e-33 144.8 74 93.2
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 5.4e-33 144.1 74 93.2
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 9.2e-33 143.3 74 91.9
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 1.6e-32 142.5 69 98.6
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.0e-31 139.8 74 90.5
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 3.3e-30 134.8 74 85.1
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 86.5
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 83.8
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 83.8
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 83.8
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 83.8
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 83.8
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.6e-29 132.5 74 83.8
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.6e-29 131.3 74 83.8
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 8.1e-29 130.2 74 82.4
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 8.1e-29 130.2 74 82.4
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.4e-28 129.4 74 85.1
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.8e-28 129.0 74 83.8
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.3e-28 128.6 74 82.4
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 5.2e-28 127.5 74 83.8
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.8e-28 127.1 74 82.4
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-27 125.9 74 81.1
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-27 125.9 74 81.1
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-27 125.9 74 81.1
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.0e-27 125.6 70 85.7
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.0e-27 125.6 70 85.7
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 2.6e-27 125.2 71 84.5
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 3.4e-27 124.8 72 81.9
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 3.4e-27 124.8 72 81.9
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 5.8e-27 124.0 74 82.4
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 5.8e-27 124.0 74 82.4
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.5e-27 123.6 71 83.1
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 7.5e-27 123.6 71 83.1
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 7.5e-27 123.6 71 83.1
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 7.5e-27 123.6 71 83.1
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 1.3e-26 122.9 71 81.7
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.7e-26 122.5 68 88.2
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 3.7e-26 121.3 74 79.7
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 3.7e-26 121.3 68 86.8
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.9e-25 119.0 84 73.8
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 5.4e-25 117.5 70 77.1
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.1e-25 117.1 65 87.7
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 1.0e-23 113.2 67 83.6
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 5.6e-22 107.5 61 83.6
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 6.2e-21 104.0 61 82.0
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 6.2e-21 104.0 63 79.4
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-20 102.1 61 80.3
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 2.4e-20 102.1 58 82.8
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 4.0e-20 101.3 63 77.8
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 8.9e-20 100.1 46 100.0
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 9.9e-19 96.7 44 100.0
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 9.9e-19 96.7 44 100.0
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.7e-18 95.9 67 71.6
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.9e-18 95.1 54 88.9
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.1e-17 93.2 68 64.7
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 9.2e-17 90.1 46 91.3
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.1e-14 83.2 57 77.2
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 7.3e-14 80.5 51 70.6
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 2.1e-13 79.0 44 84.1
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 4.0e-12 74.7 44 81.8
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 9.9e-11 70.1 43 76.7
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.7e-10 69.3 43 81.4
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.2e-10 68.9 44 77.3
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.9e-09 65.9 74 50.0
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.9e-09 65.9 74 50.0
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 2.4e-09 65.5 68 45.6
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 3.5e-08 61.6 39 79.5


User provided reference genes

Program Settings