Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC25t45868Z Brassica rapa HOM05D000806 ORTHO05D002320 5.0e-34 147.1 71 100.0
BraSC25t45846Z Brassica rapa HOM05D000806 ORTHO05D002320 2.5e-25 118.2 68 86.8
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 1.7e-21 105.5 66 78.8
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 1.7e-21 105.5 66 78.8
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 1.7e-21 105.5 66 78.8
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 1.7e-21 105.5 66 78.8
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-21 105.5 66 78.8
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 1.7e-21 105.5 66 78.8
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 1.7e-21 105.5 66 78.8
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 6.4e-21 103.6 68 76.5
BolSC29t60587H Brassica oleracea HOM05D000806 ORTHO05D002320 1.1e-20 102.8 66 78.8
BolSC49t61185H Brassica oleracea HOM05D000806 ORTHO05D002320 1.1e-20 102.8 66 78.8
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-20 101.7 66 77.3
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-20 101.7 66 77.3
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-20 101.7 66 77.3
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 2.1e-19 98.6 70 70.0
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.0e-18 96.3 70 68.6
BNapus_Darmor_BZH_scaffold_287p00130 Brassica napus HOM05D000806 ORTHO05D002320 1.0e-18 96.3 60 80.0
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 5.1e-18 94.0 53 84.9
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 2.5e-17 91.7 55 78.2
C02p24800 Brassica napus HOM05D000806 ORTHO05D002320 5.8e-14 80.5 45 77.8
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 7.5e-14 80.1 60 63.3
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.3e-13 79.3 64 57.8
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.7e-13 79.0 61 63.9
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.7e-13 79.0 61 63.9
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.9e-13 78.2 46 76.1
BolC2t08571H Brassica oleracea HOM05D000806 ORTHO05D002320 3.7e-13 77.8 45 75.6
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 67 58.2
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 67 58.2
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 57 63.2
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 67 58.2
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 67 58.2
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 67 58.2
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 3.7e-13 77.8 67 58.2
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 8.3e-13 76.6 56 62.5
HanXRQChr10g0318221 Helianthus annuus HOM05D000806 ORTHO05D002320 8.3e-13 76.6 64 59.4
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.1e-12 76.3 60 61.7
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.1e-12 76.3 57 61.4
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.4e-12 75.9 55 63.6
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.4e-12 75.9 55 63.6
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.4e-12 75.9 55 63.6
BolSC46t61037H Brassica oleracea HOM05D000806 ORTHO05D002320 1.9e-12 75.5 42 88.1
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.9e-12 75.5 55 61.8
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.9e-12 75.5 60 61.7
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.9e-12 75.5 60 61.7
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.9e-12 75.5 60 61.7
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 1.9e-12 75.5 55 61.8
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.4e-12 75.1 60 60.0
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.4e-12 75.1 60 60.0
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 2.4e-12 75.1 57 59.6
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 3.2e-12 74.7 49 69.4
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 3.2e-12 74.7 52 65.4
Peaxi162Scf01064g00230 Petunia axillaris HOM05D000806 ORTHO05D002320 3.2e-12 74.7 52 65.4
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 4.1e-12 74.3 52 65.4
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 5.4e-12 73.9 55 61.8
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 5.4e-12 73.9 55 61.8
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 7.1e-12 73.6 53 66.0
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 7.1e-12 73.6 50 66.0
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 7.1e-12 73.6 50 66.0
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 9.2e-12 73.2 48 68.8
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.2e-11 72.8 60 60.0
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 1.2e-11 72.8 52 65.4
Peaxi162Scf00937g00111 Petunia axillaris HOM05D000806 ORTHO05D002320 1.2e-11 72.8 45 71.1
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 1.6e-11 72.4 66 53.0
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 2.1e-11 72.0 54 61.1
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.7e-11 71.6 60 58.3
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.7e-11 71.6 60 58.3
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 4.6e-11 70.9 45 71.1
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.6e-11 70.9 60 58.3
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 4.6e-11 70.9 52 63.5
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 7.8e-11 70.1 47 68.1
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.8e-11 70.1 60 58.3
BcaB01g03056 Brassica carinata HOM05D000806 ORTHO05D002320 1.3e-10 69.3 56 62.5
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 1.3e-10 69.3 51 64.7
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 1.3e-10 69.3 51 64.7
Lalb_Chr10g0102281 Lupinus albus HOM05D000806 ORTHO05D002320 1.7e-10 68.9 50 66.0
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 2.3e-10 68.6 61 52.5
Hund08575 Selenicereus undatus HOM05D000806 ORTHO05D002320 3.0e-10 68.2 65 53.8
Hund28450 Selenicereus undatus HOM05D000680 ORTHO05D002320 3.0e-10 68.2 65 53.8
Hund29174 Selenicereus undatus HOM05D000680 ORTHO05D002320 3.0e-10 68.2 65 53.8
Hund29492 Selenicereus undatus HOM05D000806 ORTHO05D002320 3.0e-10 68.2 65 53.8
Hund29619 Selenicereus undatus HOM05D000806 ORTHO05D002320 3.0e-10 68.2 65 53.8
Psat5g134840 Pisum sativum HOM05D000806 ORTHO05D002320 3.9e-10 67.8 51 62.7
CAN.G1012.3 Capsicum annuum HOM05D000806 ORTHO05D002320 5.1e-10 67.4 52 57.7
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 1.1e-09 66.2 46 67.4
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 1.5e-09 65.9 46 58.7
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 1.5e-09 65.9 46 58.7
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 2.5e-09 65.1 55 58.2
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 4.3e-09 64.3 49 57.1
Sopen04g010000 Solanum pennellii HOM05D000806 ORTHO05D002320 4.3e-09 64.3 58 56.9
Lsat_1_v5_gn_4_69500 Lactuca sativa HOM05D000806 ORTHO05D002320 9.5e-09 63.2 40 65.0
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 1.2e-08 62.8 31 93.5
Medtr3g080300 Medicago truncatula HOM05D000806 ORTHO05D002320 1.6e-08 62.4 46 65.2
arahy.Tifrunner.gnm1.ann1.15M9SP Arachis hypogaea HOM05D000806 ORTHO05D002320 2.1e-08 62.0 34 85.3
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 2.8e-08 61.6 44 61.4
arahy.Tifrunner.gnm1.ann1.6V23H5 Arachis hypogaea HOM05D000806 ORTHO05D002320 8.1e-08 60.1 34 82.4
MD02G1049400 Malus domestica HOM05D000806 ORTHO05D002320 8.1e-08 60.1 49 61.2
Nn265s45953 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.1e-07 59.7 41 70.7
Lj1P303T21 Lonicera japonica HOM05D000806 ORTHO05D002320 1.4e-07 59.3 54 50.0
vmacro18167 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 1.4e-07 59.3 42 59.5
vmacro18617 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 1.4e-07 59.3 42 59.5
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 2.4e-07 58.5 54 50.0
Lj2A1237T126 Lonicera japonica HOM05D000806 ORTHO05D002320 2.4e-07 58.5 54 50.0
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.4e-07 58.5 54 50.0
CARHR116850 Cardamine hirsuta HOM05D000806 ORTHO05D002320 3.1e-07 58.2 49 63.3
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.1e-07 58.2 40 70.0
AUR62006476 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.1e-07 58.2 40 70.0
AUR62032522 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.1e-07 58.2 40 70.0
AUR62041919 Chenopodium quinoa HOM05D000806 ORTHO05D002324 3.1e-07 58.2 40 70.0
AUR62042261 Chenopodium quinoa HOM05D000806 ORTHO05D002324 3.1e-07 58.2 40 70.0
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 4.0e-07 57.8 55 56.4
Nitab4.5_0003644g0070 Nicotiana tabacum HOM05D000806 ORTHO05D002320 4.0e-07 57.8 40 70.0
Sopen07g002120 Solanum pennellii HOM05D000806 ORTHO05D002320 4.0e-07 57.8 40 70.0
CAN.G1007.1 Capsicum annuum HOM05D000806 ORTHO05D002320 5.2e-07 57.4 40 67.5
CAN.G445.6 Capsicum annuum HOM05D000806 ORTHO05D002320 5.2e-07 57.4 40 67.5
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.2e-07 57.4 44 63.6
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 5.2e-07 57.4 40 70.0
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 6.8e-07 57.0 34 79.4
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 6.8e-07 57.0 39 69.2
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 6.8e-07 57.0 39 69.2
AUR62023874 Chenopodium quinoa HOM05D000806 ORTHO05D002324 8.9e-07 56.6 40 67.5
Hund08809 Selenicereus undatus HOM05D000806 ORTHO05D002320 8.9e-07 56.6 52 55.8
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 8.9e-07 56.6 43 62.8
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 1.2e-06 56.2 49 55.1
CAN.G1693.6 Capsicum annuum HOM05D000806 ORTHO05D002320 1.5e-06 55.8 40 65.0
AUR62028418 Chenopodium quinoa HOM05D000806 ORTHO05D002324 2.0e-06 55.5 40 67.5
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 2.0e-06 55.5 40 67.5
Hund27490 Selenicereus undatus HOM05D000806 ORTHO05D002320 2.6e-06 55.1 44 63.6
Oeu012807.1 Olea europaea HOM05D000806 ORTHO05D002320 5.8e-06 53.9 33 75.8
Psat0s2288g0120 Pisum sativum HOM05D000806 ORTHO05D002320 7.6e-06 53.5 38 71.1
Psat0s2288g0160 Pisum sativum HOM05D000806 ORTHO05D002320 7.6e-06 53.5 38 71.1
Psat0s415g0040 Pisum sativum HOM05D000806 ORTHO05D002320 7.6e-06 53.5 38 71.1
Hund07992 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund19838 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund22772 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund27485 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund27599 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund27874 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund27977 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund28101 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund28473 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund28511 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund28624 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund28670 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund28748 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund29142 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund29363 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund29462 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund29637 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund29868 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund30328 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund30362 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund30468 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund30508 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
Hund30560 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.6e-06 53.5 44 61.4
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 7.6e-06 53.5 43 62.8
RcHm_v2.0_Chr6g0281331 Rosa chinensis HOM05D000806 ORTHO05D002320 9.9e-06 53.1 42 61.9


User provided reference genes

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