Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC25t45846Z Brassica rapa HOM05D000806 ORTHO05D002320 5.3e-33 143.7 68 100.0
BraSC25t45868Z Brassica rapa HOM05D000806 ORTHO05D002320 1.1e-25 119.4 68 86.8
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 9.1e-25 116.3 70 82.9
C02p43520 Brassica napus HOM05D000806 ORTHO05D002320 2.6e-24 114.8 52 100.0
C09p29580 Brassica napus HOM05D000806 ORTHO05D002320 2.6e-24 114.8 52 100.0
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 2.6e-24 114.8 52 100.0
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 2.6e-24 114.8 52 100.0
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 2.6e-24 114.8 52 100.0
BraSC59t46593Z Brassica rapa HOM05D000806 ORTHO05D002320 2.6e-24 114.8 52 100.0
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 2.6e-24 114.8 52 100.0
BolSC49t61185H Brassica oleracea HOM05D000806 ORTHO05D002320 7.7e-24 113.2 69 82.6
BolSC29t60587H Brassica oleracea HOM05D000806 ORTHO05D002320 3.8e-23 110.9 52 98.1
BolSC35t60644H Brassica oleracea HOM05D000806 ORTHO05D002320 3.8e-23 110.9 52 98.1
BolSC35t60752H Brassica oleracea HOM05D000806 ORTHO05D002320 3.8e-23 110.9 52 98.1
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 3.8e-23 110.9 52 98.1
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 1.1e-22 109.4 52 92.3
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 5.5e-22 107.1 52 90.4
BNapus_Darmor_BZH_scaffold_287p00130 Brassica napus HOM05D000806 ORTHO05D002320 1.6e-21 105.5 62 82.3
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 8.0e-21 103.2 49 91.8
BcaC04g21638 Brassica carinata HOM05D000806 ORTHO05D002320 8.0e-21 103.2 46 100.0
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 4.1e-17 90.9 53 73.6
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 1.6e-16 89.0 55 69.1
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.6e-16 89.0 48 77.1
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.0e-16 88.6 45 82.2
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 3.5e-16 87.8 48 77.1
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 7.7e-16 86.7 55 69.1
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 7.7e-16 86.7 48 75.0
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 7.7e-16 86.7 48 75.0
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 7.7e-16 86.7 48 75.0
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 7.7e-16 86.7 50 72.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-15 86.3 48 72.9
HanXRQChr10g0318221 Helianthus annuus HOM05D000806 ORTHO05D002320 1.0e-15 86.3 45 80.0
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.3e-15 85.9 50 72.0
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 1.3e-15 85.9 48 72.9
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.7e-15 85.5 47 74.5
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 1.7e-15 85.5 50 70.0
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-15 85.1 70 57.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-15 85.1 70 57.1
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-15 85.1 70 57.1
Peaxi162Scf01064g00230 Petunia axillaris HOM05D000806 ORTHO05D002320 2.2e-15 85.1 45 77.8
C02p24800 Brassica napus HOM05D000806 ORTHO05D002320 2.9e-15 84.7 44 81.8
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 2.9e-15 84.7 48 72.9
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 2.9e-15 84.7 48 72.9
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 2.9e-15 84.7 45 77.8
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.8e-15 84.3 53 69.8
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.8e-15 84.3 53 69.8
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 3.8e-15 84.3 53 69.8
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 3.8e-15 84.3 53 69.8
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 3.8e-15 84.3 49 71.4
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 3.8e-15 84.3 49 71.4
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 6.5e-15 83.6 47 72.3
Peaxi162Scf00937g00111 Petunia axillaris HOM05D000806 ORTHO05D002320 6.5e-15 83.6 44 77.3
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 8.5e-15 83.2 53 69.8
Lalb_Chr23g0274531 Lupinus albus HOM05D000806 ORTHO05D002320 8.5e-15 83.2 45 77.8
TPR.G16839 Trifolium pratense HOM05D000806 ORTHO05D002320 1.5e-14 82.4 50 70.0
BolC2t08571H Brassica oleracea HOM05D000806 ORTHO05D002320 1.9e-14 82.0 44 79.5
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 2.5e-14 81.6 44 77.3
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 3.2e-14 81.3 46 73.9
Nitab4.5_0009663g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002320 3.2e-14 81.3 45 75.6
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.2e-14 80.9 53 67.9
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.2e-14 80.9 53 67.9
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 5.5e-14 80.5 50 68.0
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 7.2e-14 80.1 47 72.3
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-13 79.3 53 67.9
Lalb_Chr10g0102281 Lupinus albus HOM05D000806 ORTHO05D002320 1.2e-13 79.3 43 79.1
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 1.2e-13 79.3 46 73.9
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 1.2e-13 79.3 46 73.9
Hund08575 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.2e-13 79.3 63 57.1
Hund28450 Selenicereus undatus HOM05D000680 ORTHO05D002320 1.2e-13 79.3 63 57.1
Hund29174 Selenicereus undatus HOM05D000680 ORTHO05D002320 1.2e-13 79.3 63 57.1
Hund29492 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.2e-13 79.3 63 57.1
Hund29619 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.2e-13 79.3 63 57.1
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.1e-13 78.6 53 66.0
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 2.7e-13 78.2 47 70.2
CAN.G1012.3 Capsicum annuum HOM05D000806 ORTHO05D002320 3.6e-13 77.8 45 68.9
BolSC46t61037H Brassica oleracea HOM05D000806 ORTHO05D002320 4.7e-13 77.4 41 95.1
Lsat_1_v5_gn_7_98301 Lactuca sativa HOM05D000806 ORTHO05D002320 4.7e-13 77.4 45 71.1
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 2.3e-12 75.1 48 62.5
Medtr3g080300 Medicago truncatula HOM05D000806 ORTHO05D002320 6.8e-12 73.6 45 71.1
Psat5g134840 Pisum sativum HOM05D000806 ORTHO05D002320 6.8e-12 73.6 46 69.6
BcaB01g03056 Brassica carinata HOM05D000806 ORTHO05D002320 2.0e-11 72.0 38 84.2
Lsat_1_v5_gn_4_69500 Lactuca sativa HOM05D000806 ORTHO05D002320 4.4e-11 70.9 42 69.0
Sopen04g010000 Solanum pennellii HOM05D000806 ORTHO05D002320 4.4e-11 70.9 51 64.7
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-11 70.5 38 76.3
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 5.7e-11 70.5 38 76.3
Lj1P303T21 Lonicera japonica HOM05D000806 ORTHO05D002320 9.8e-11 69.7 50 58.0
vmacro18167 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 1.3e-10 69.3 41 65.9
vmacro18617 Vaccinium macrocarpon HOM05D000806 ORTHO05D002320 1.3e-10 69.3 41 65.9
Lj2A1237T126 Lonicera japonica HOM05D000806 ORTHO05D002320 1.7e-10 68.9 50 58.0
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.7e-10 68.9 50 58.0
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 2.2e-10 68.6 31 100.0
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 3.7e-10 67.8 39 74.4
arahy.Tifrunner.gnm1.ann1.15M9SP Arachis hypogaea HOM05D000806 ORTHO05D002320 6.3e-10 67.0 33 87.9
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.1e-09 66.2 61 50.8
arahy.Tifrunner.gnm1.ann1.6V23H5 Arachis hypogaea HOM05D000806 ORTHO05D002320 2.4e-09 65.1 33 84.8
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 3.1e-09 64.7 38 71.1
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.1e-09 64.3 61 52.5
Psat0s1586g0200 Pisum sativum HOM05D000806 ORTHO05D002320 7.0e-09 63.5 48 62.5
CARHR116850 Cardamine hirsuta HOM05D000806 ORTHO05D002320 1.2e-08 62.8 29 96.6
Nn265s45953 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.2e-08 62.8 33 81.8
Nitab4.5_0003644g0070 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.2e-08 62.8 33 81.8
Sopen07g002120 Solanum pennellii HOM05D000806 ORTHO05D002320 1.2e-08 62.8 33 81.8
CAN.G1007.1 Capsicum annuum HOM05D000806 ORTHO05D002320 1.6e-08 62.4 33 78.8
CAN.G445.6 Capsicum annuum HOM05D000806 ORTHO05D002320 1.6e-08 62.4 33 78.8
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.6e-08 62.4 33 81.8
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.0e-08 62.0 33 81.8
AUR62006476 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.0e-08 62.0 33 81.8
AUR62032522 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.0e-08 62.0 33 81.8
AUR62041919 Chenopodium quinoa HOM05D000806 ORTHO05D002324 2.0e-08 62.0 33 81.8
AUR62042261 Chenopodium quinoa HOM05D000806 ORTHO05D002324 2.0e-08 62.0 33 81.8
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 2.0e-08 62.0 32 81.2
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 2.0e-08 62.0 32 81.2
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 2.7e-08 61.6 33 81.8
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 2.7e-08 61.6 40 70.0
CAN.G1693.6 Capsicum annuum HOM05D000806 ORTHO05D002320 4.5e-08 60.8 33 75.8
MD02G1049400 Malus domestica HOM05D000806 ORTHO05D002320 4.5e-08 60.8 33 78.8
SMO364G0525 Selaginella moellendorffii HOM05D000806 ORTHO05D002320 4.5e-08 60.8 59 44.1
Hund27490 Selenicereus undatus HOM05D000806 ORTHO05D002320 4.5e-08 60.8 42 64.3
AUR62023874 Chenopodium quinoa HOM05D000806 ORTHO05D002324 5.9e-08 60.5 33 78.8
Hund08809 Selenicereus undatus HOM05D000806 ORTHO05D002320 5.9e-08 60.5 48 56.2
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 5.9e-08 60.5 32 81.2
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 5.9e-08 60.5 40 67.5
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 7.7e-08 60.1 40 65.0
RcHm_v2.0_Chr6g0281331 Rosa chinensis HOM05D000806 ORTHO05D002320 1.0e-07 59.7 41 65.9
AUR62028418 Chenopodium quinoa HOM05D000806 ORTHO05D002324 1.3e-07 59.3 33 78.8
Oeu012807.1 Olea europaea HOM05D000806 ORTHO05D002320 1.3e-07 59.3 32 78.1
Hund07992 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund19838 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund22772 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund27485 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund27599 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund27874 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund27977 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund28101 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund28473 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund28511 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund28624 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund28670 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund28748 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund29142 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund29363 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund29462 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund29637 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund29868 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund30328 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund30362 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund30468 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund30508 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Hund30560 Selenicereus undatus HOM05D000806 ORTHO05D002320 1.3e-07 59.3 42 61.9
Psat0s2288g0120 Pisum sativum HOM05D000806 ORTHO05D002320 2.9e-07 58.2 33 78.8
Psat0s2288g0160 Pisum sativum HOM05D000806 ORTHO05D002320 2.9e-07 58.2 33 78.8
Psat0s415g0040 Pisum sativum HOM05D000806 ORTHO05D002320 2.9e-07 58.2 33 78.8
CDE02G1301 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 5.0e-07 57.4 31 80.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 5.0e-07 57.4 33 78.8
BNapus_Darmor_BZH_scaffold_253p00210 Brassica napus HOM05D000806 ORTHO05D002320 8.6e-07 56.6 25 100.0
VMungo0251G1963 Vigna mungo HOM05D000806 ORTHO05D010715 8.6e-07 56.6 31 80.6
Psat2g111000 Pisum sativum HOM05D000806 ORTHO05D002320 1.1e-06 56.2 33 75.8
Psat5g286240 Pisum sativum HOM05D000806 ORTHO05D002320 5.5e-06 53.9 33 72.7
arahy.Tifrunner.gnm1.ann1.YEGK0N Arachis hypogaea HOM05D000806 ORTHO05D002320 7.2e-06 53.5 59 49.2
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 7.2e-06 53.5 31 77.4
Hund04049 Selenicereus undatus HOM05D000806 ORTHO05D002320 7.2e-06 53.5 31 71.0
Nitab4.5_0000342g0250 Nicotiana tabacum HOM05D000806 ORTHO05D002320 9.5e-06 53.1 27 81.5
SEGI_25777 Sequoiadendron giganteum HOM05D000806 ORTHO05D003511 9.5e-06 53.1 62 50.0
SEGI_40898 Sequoiadendron giganteum HOM05D000806 ORTHO05D003511 9.5e-06 53.1 62 50.0


User provided reference genes

Program Settings