Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 0.0e+00 1078.9 785 100.0
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 9.1e-305 1050.4 788 97.7
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 3.2e-294 1015.4 786 95.5
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 2.7e-285 985.7 768 96.0
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 2.1e-277 959.5 790 91.9
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 3.5e-264 915.6 769 90.6
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 2.0e-251 873.2 769 88.9
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 8.9e-244 847.8 765 87.5
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 7.8e-232 808.1 768 80.5
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 3.1e-204 716.5 769 78.4
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 5.6e-153 546.2 721 64.1
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 2.9e-149 533.9 759 63.5
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.6e-147 528.1 718 63.1
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 2.3e-146 524.2 763 61.2
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 1.4e-143 515.0 562 87.4
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 1.5e-142 511.5 773 65.6
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 2.0e-142 511.1 713 67.9
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 4.4e-142 510.0 772 65.4
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 5.8e-142 509.6 772 65.3
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 2.9e-141 507.3 759 60.3
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 3.7e-141 506.9 767 63.4
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 6.0e-139 499.6 742 67.3
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.3e-138 498.4 725 65.9
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 1.7e-138 498.0 732 60.5
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 2.3e-138 497.7 768 62.1
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.9e-137 494.6 771 65.1
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 4.7e-136 490.0 533 80.7
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 1.2e-134 485.3 755 59.2
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 2.0e-134 484.6 757 65.1
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 2.0e-134 484.6 761 65.6
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 1.9e-132 478.0 765 58.4
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.9e-132 478.0 744 60.1
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 2.4e-132 477.6 753 55.1
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 2.3e-130 471.1 753 59.5
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 5.1e-130 469.9 719 61.6
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 8.6e-130 469.2 759 61.8
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 1.9e-129 468.0 730 62.3
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 4.3e-129 466.8 766 63.2
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 1.2e-128 465.3 764 63.4
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 1.8e-127 461.5 737 60.0
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 1.2e-126 458.8 761 54.5
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 1.5e-126 458.4 731 63.5
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 2.9e-125 454.1 754 58.0
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 3.7e-125 453.8 754 58.1
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.0e-122 445.7 754 57.8
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 6.6e-122 443.0 770 61.0
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 2.8e-120 437.6 768 57.2
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 2.4e-119 434.5 770 57.8
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 4.9e-117 426.8 789 55.6
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 1.1e-116 425.6 769 57.3
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 5.1e-114 416.8 745 58.3
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 1.1e-113 415.6 711 65.1
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 1.1e-113 415.6 850 56.0
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 2.5e-113 414.5 754 61.4
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.8e-112 410.2 785 53.6
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 1.1e-111 409.1 766 55.2
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 1.1e-111 409.1 732 55.3
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 5.8e-110 403.3 784 53.6
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 2.9e-109 401.0 787 54.5
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 3.8e-109 400.6 774 47.5
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 6.4e-109 399.8 765 59.6
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 9.3e-108 396.0 778 61.2
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 1.2e-107 395.6 750 57.2
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 1.6e-107 395.2 768 55.6
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.7e-106 391.7 798 57.4
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 2.3e-106 391.3 750 60.3
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 5.1e-106 390.2 757 56.7
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 3.3e-105 387.5 784 57.0
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 2.8e-104 384.4 771 60.3
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 1.1e-103 382.5 750 60.7
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 5.3e-103 380.2 766 56.7
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 4.5e-102 377.1 772 60.2
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 1.3e-101 375.6 764 53.9
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 2.4e-100 371.3 753 59.4
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 3.2e-100 370.9 750 53.6
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 5.1e-98 363.6 755 58.3
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.9e-97 361.7 755 56.3
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 4.3e-97 360.5 751 59.0
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 7.4e-97 359.8 767 51.4
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 6.9e-95 353.2 741 54.0
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 4.6e-91 340.5 755 58.9
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 2.3e-90 338.2 277 63.2
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 6.7e-90 336.7 652 64.6
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 9.0e-87 326.2 762 56.8
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 1.0e-82 312.8 764 54.8
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 8.5e-77 293.1 218 66.1
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 2.1e-75 288.5 773 53.9
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.8e-74 285.4 172 81.4
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 1.8e-71 275.4 540 68.0
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 9.1e-71 273.1 174 83.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 2.0e-65 255.4 542 59.0
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 3.1e-55 221.5 260 48.8
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 6.1e-51 207.2 229 52.0
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 1.7e-48 199.1 544 50.7
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 1.0e-45 189.9 262 43.9
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 1.5e-44 186.0 248 44.8
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 3.4e-41 174.9 580 52.4
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 9.8e-33 146.7 218 40.4
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 8.3e-32 143.7 574 25.3
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 3.5e-22 111.7 84 58.3
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.0e-21 110.2 95 58.9
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 5.8e-17 94.4 45 97.8
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 4.1e-15 88.2 84 53.6
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 2.5e-12 79.0 112 39.3
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 6.2e-11 74.3 174 26.4
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 4.0e-10 71.6 76 50.0
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 2.6e-09 68.9 135 30.4
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 4.4e-09 68.2 145 30.3
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 5.8e-09 67.8 133 30.8
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 5.8e-09 67.8 136 29.4
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.7e-08 66.2 146 30.1
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 2.2e-08 65.9 176 25.0
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 3.8e-08 65.1 136 28.7
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 3.8e-08 65.1 94 34.0
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 3.8e-08 65.1 136 29.4
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 4.9e-08 64.7 142 27.5
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 6.4e-08 64.3 128 28.1
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 8.4e-08 63.9 121 28.9
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 1.1e-07 63.5 135 28.1
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 1.4e-07 63.2 124 29.8
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 2.4e-07 62.4 147 29.3
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 3.2e-07 62.0 128 28.9
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 3.2e-07 62.0 139 28.1
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.2e-07 62.0 137 27.0
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 4.1e-07 61.6 114 29.8
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 5.4e-07 61.2 65 41.5
Dinv05062 Davidia involucrata HOM05D000001 ORTHO05D000003 5.4e-07 61.2 262 24.4
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.4e-07 61.2 137 26.3
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 5.4e-07 61.2 113 27.4
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 7.1e-07 60.8 136 26.5
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 7.1e-07 60.8 136 26.5
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 9.2e-07 60.5 136 27.2
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 9.2e-07 60.5 136 26.5
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 9.2e-07 60.5 136 26.5
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 9.2e-07 60.5 139 30.2
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.2e-06 60.1 98 29.6
Aa31LG6G15310 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.1e-06 59.3 273 24.9
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 2.1e-06 59.3 106 32.1
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 2.1e-06 59.3 112 29.5
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 2.1e-06 59.3 136 26.5
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 2.7e-06 58.9 139 29.5
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.5e-06 58.5 137 25.5
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 4.6e-06 58.2 89 33.7
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 6.0e-06 57.8 112 28.6
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 6.0e-06 57.8 148 29.7
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 7.8e-06 57.4 139 26.6
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 7.8e-06 57.4 136 25.7
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 7.8e-06 57.4 136 25.7


User provided reference genes

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