Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-66 256.5 134 100.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.5e-66 256.1 133 100.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-66 256.1 133 100.0
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-66 256.1 133 100.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 3.0e-64 248.4 134 98.5
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 7.4e-63 243.8 135 97.8
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 2.8e-62 241.9 136 97.1
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 3.7e-62 241.5 126 100.0
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 5.9e-60 234.2 132 93.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 6.5e-59 230.7 133 92.5
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.3e-56 222.2 133 88.7
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 1.2e-55 219.9 133 88.0
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 4.8e-54 214.5 133 85.7
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 7.7e-52 207.2 133 82.0
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 7.7e-52 207.2 133 82.0
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 1.0e-51 206.8 133 84.2
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-51 205.3 125 92.0
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 3.8e-51 204.9 133 82.7
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 5.0e-51 204.5 133 82.0
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 5.0e-51 204.5 133 82.0
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 5.5e-50 201.1 133 80.5
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 3.0e-48 195.3 133 78.9
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 8.8e-48 193.7 133 78.9
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.5e-47 193.0 133 78.2
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 4.4e-47 191.4 133 76.7
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 9.8e-47 190.3 140 77.1
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-46 189.9 133 77.4
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-46 189.9 133 77.4
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-46 189.9 133 77.4
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-46 189.9 133 77.4
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-46 189.9 133 77.4
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 1.7e-46 189.5 133 76.7
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 2.8e-46 188.7 167 65.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.9e-46 188.0 133 76.7
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.2e-44 183.3 135 74.8
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 3.8e-43 178.3 94 98.9
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.6e-42 174.5 133 72.2
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.7e-41 171.4 140 70.0
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 6.1e-41 171.0 90 97.8
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 1.8e-37 159.5 133 66.2
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.7e-36 155.6 84 100.0
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.6e-34 147.9 133 63.9
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.3e-34 147.5 114 70.2
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 1.6e-33 146.4 132 62.1
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.5e-31 137.5 133 59.4
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.7e-30 136.3 95 80.0
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 9.2e-29 130.6 80 85.0
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.2e-28 130.2 95 76.8
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.6e-28 129.8 69 95.7
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 6.0e-28 127.9 78 88.5
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 6.0e-28 127.9 78 88.5
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-27 125.9 76 92.1
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 5.6e-26 121.3 126 57.9
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 7.3e-26 120.9 80 81.2
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 1.6e-25 119.8 70 90.0
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 2.1e-25 119.4 95 71.6
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.2e-23 113.6 70 85.7
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 2.6e-23 112.5 69 85.5
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.6e-23 112.5 92 69.6
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.2e-22 109.4 77 75.3
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.2e-22 109.4 77 75.3
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.2e-22 109.4 77 75.3
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 3.7e-22 108.6 65 87.7
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 3.7e-22 108.6 65 87.7
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 3.7e-22 108.6 72 77.8
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 4.9e-22 108.2 69 84.1
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 6.4e-22 107.8 70 78.6
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 6.4e-22 107.8 70 81.4
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 1.9e-21 106.3 85 70.6
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.9e-21 106.3 69 81.2
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 3.2e-21 105.5 117 55.6
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-20 103.6 67 80.6
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-20 103.6 129 52.7
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 2.3e-19 99.4 65 81.5
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.0e-19 99.0 66 77.3
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.1e-19 98.2 69 75.4
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-18 97.1 65 80.0
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-18 97.1 65 80.0
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-18 97.1 65 80.0
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.5e-18 96.7 102 56.9
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 2.5e-18 95.9 48 93.8
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.5e-18 95.9 67 76.1
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.6e-18 94.7 63 79.4
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 9.5e-18 94.0 48 91.7
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.7e-17 91.7 65 78.5
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 6.2e-17 91.3 57 86.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 1.4e-16 90.1 70 72.9
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.4e-16 90.1 48 87.5
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-16 89.7 48 87.5
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 3.1e-16 89.0 65 73.8
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.2e-15 87.0 56 80.4
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-15 87.0 48 87.5
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.0e-15 86.3 105 54.3
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 4.4e-15 85.1 70 65.7
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 4.4e-15 85.1 70 65.7
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 7.6e-15 84.3 50 82.0
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 2.2e-14 82.8 75 62.7
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.2e-14 82.8 47 85.1
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 4.9e-14 81.6 51 82.4
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 4.9e-14 81.6 47 83.0
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.9e-14 81.6 94 55.3
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 8.4e-14 80.9 56 76.8
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.4e-14 80.9 51 80.4
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 1.9e-13 79.7 55 76.4
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.1e-13 77.8 51 78.4
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.1e-13 77.8 51 78.4
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 1.6e-12 76.6 50 74.0
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 7.8e-12 74.3 135 34.1
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.0e-11 73.9 51 76.5
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.3e-11 72.8 43 86.0
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 3.9e-11 72.0 52 71.2
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 3.9e-11 72.0 41 82.9
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 5.1e-11 71.6 50 72.0
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-10 70.1 51 70.6
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.3e-10 68.9 61 62.3
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.3e-10 68.9 61 62.3
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.3e-10 68.6 50 74.0
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.3e-10 68.6 50 74.0
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 5.6e-10 68.2 34 100.0
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 5.6e-10 68.2 34 100.0
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 5.6e-10 68.2 34 100.0
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 2.8e-09 65.9 41 80.5
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 8.1e-09 64.3 41 82.9
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 5.2e-08 61.6 82 46.3
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.0e-07 59.7 36 80.6
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 2.0e-07 59.7 72 52.8
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 9.9e-07 57.4 34 79.4
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 9.9e-07 57.4 34 79.4
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 9.9e-07 57.4 34 79.4
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 9.9e-07 57.4 78 50.0
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 2.2e-06 56.2 34 79.4
SEGI_17353 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 2.9e-06 55.8 47 61.7
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 4.9e-06 55.1 33 78.8
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.4e-06 54.3 31 83.9


User provided reference genes

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