Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC46t61019H Brassica oleracea HOM05D000964 ORTHO05D003870 5.6e-25 116.7 55 100.0
C02p60160 Brassica napus HOM05D000964 ORTHO05D003870 8.7e-18 92.8 55 83.6
Sed0000218 Sechium edule HOM05D000964 ORTHO05D003870 2.4e-15 84.7 47 87.2
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BolC7t41710H Brassica oleracea HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BraSC103t45447Z Brassica rapa HOM05D000964 ORTHO05D004047 3.1e-15 84.3 47 87.2
BraSC103t45483Z Brassica rapa HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 3.1e-15 84.3 47 87.2
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 3.1e-15 84.3 47 87.2
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 3.1e-15 84.3 47 87.2
Gohir.A04G051926 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.1e-15 84.3 54 77.8
Gohir.A05G086300 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.1e-15 84.3 54 77.8
HanXRQChr11g0345271 Helianthus annuus HOM05D000964 ORTHO05D003870 5.3e-15 83.6 47 85.1
Migut.D01368 Erythranthe guttata HOM05D000964 ORTHO05D003870 6.9e-15 83.2 54 75.9
Phvul.001G047500 Phaseolus vulgaris HOM05D000964 ORTHO05D003870 1.2e-14 82.4 54 72.2
Solyc00g500156.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.2e-14 82.4 47 83.0
Solyc09g050063.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.2e-14 82.4 47 83.0
Ah.10g027200 Amaranthus hybridus HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
Ah.10g027350 Amaranthus hybridus HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
Ah.10g027470 Amaranthus hybridus HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
AL2G21710 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
EL10As12g24035 Beta vulgaris HOM05D000964 ORTHO05D001488 1.5e-14 82.0 47 85.1
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
Gohir.A12G025000 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
Gohir.D01G102112 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
PSO548G0016 Papaver somniferum HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
PGR111G0041 Punica granatum HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 1.5e-14 82.0 47 85.1
Sc25g0002040 Simmondsia chinensis HOM05D000964 ORTHO05D003870 1.5e-14 82.0 47 85.1
ATR0524G001 Amborella trichopoda HOM05D000964 ORTHO05D003870 2.0e-14 81.6 47 83.0
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-14 81.3 52 75.0
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-14 81.3 52 75.0
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 2.6e-14 81.3 52 75.0
CAN.G1513.11 Capsicum annuum HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
ECA074G0005 Erigeron canadensis HOM05D000540 ORTHO05D000681 3.4e-14 80.9 47 83.0
Migut.D01331 Erythranthe guttata HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
Migut.D01435 Erythranthe guttata HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr06g0173571 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr10g0303901 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.4e-14 80.9 47 83.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 3.4e-14 80.9 47 83.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.4e-14 80.9 47 83.0
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 3.4e-14 80.9 47 83.0
Peaxi162Scf00527g00311 Petunia axillaris HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 80.9
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 3.4e-14 80.9 47 83.0
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 4.5e-14 80.5 47 83.0
Gohir.A05G396500 Gossypium hirsutum HOM05D000964 ORTHO05D003870 4.5e-14 80.5 47 83.0
Nitab4.5_0000173g0060 Nicotiana tabacum HOM05D000964 ORTHO05D003870 5.8e-14 80.1 54 74.1
Oeu028770.1 Olea europaea HOM05D000964 ORTHO05D003870 5.8e-14 80.1 54 72.2
Ah.10g028970 Amaranthus hybridus HOM05D000964 ORTHO05D003870 1.0e-13 79.3 47 83.0
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 1.0e-13 79.3 47 80.9
CAN.G327.19 Capsicum annuum HOM05D000964 ORTHO05D003870 1.0e-13 79.3 47 80.9
EL10Ac4g07913 Beta vulgaris HOM05D000964 ORTHO05D003870 1.7e-13 78.6 47 80.9
arahy.Tifrunner.gnm1.ann1.HC6F08 Arachis hypogaea HOM05D000964 ORTHO05D003870 2.9e-13 77.8 47 80.9
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 2.9e-13 77.8 47 80.9
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 2.9e-13 77.8 47 80.9
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 2.9e-13 77.8 47 80.9
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 2.9e-13 77.8 47 80.9
unitig_748.g8421 Utricularia gibba HOM05D000964 ORTHO05D003870 2.9e-13 77.8 47 80.9
Lalb_Chr25g0283361 Lupinus albus HOM05D000964 ORTHO05D003870 3.8e-13 77.4 47 80.9
Nitab4.5_0011882g0030 Nicotiana tabacum HOM05D000964 ORTHO05D003870 3.8e-13 77.4 55 70.9
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 3.8e-13 77.4 47 78.7
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 5.0e-13 77.0 47 78.7
arahy.Tifrunner.gnm1.ann1.PR6ML0 Arachis hypogaea HOM05D000964 ORTHO05D003870 8.4e-13 76.3 47 78.7
Lj2C1237T33 Lonicera japonica HOM05D000964 ORTHO05D003870 8.4e-13 76.3 47 76.6
Lj2C1239T1 Lonicera japonica HOM05D000964 ORTHO05D003870 8.4e-13 76.3 47 76.6
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 1.1e-12 75.9 47 78.7
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 1.4e-12 75.5 55 72.7
Medtr1g070860 Medicago truncatula HOM05D000964 ORTHO05D004047 1.4e-12 75.5 47 80.9
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Potri.010G032501 Populus trichocarpa HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 78.7
Hund27577 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund27961 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund27984 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28108 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28267 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28458 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28518 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28528 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28631 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28745 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund28758 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29021 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29035 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29163 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29216 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29506 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29524 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29536 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29553 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29592 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29604 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29681 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund29956 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund30032 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund30068 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund30081 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.9e-12 75.1 47 74.5
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.9e-12 75.1 47 74.5
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 3.2e-12 74.3 47 74.5
Nitab4.5_0020737g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 3.2e-12 74.3 47 76.6
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 5.5e-12 73.6 47 74.5
MELO3C029309.2 Cucumis melo HOM05D000964 ORTHO05D003870 7.1e-12 73.2 46 76.1
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 7.1e-12 73.2 47 76.6
Psat6g111040 Pisum sativum HOM05D000964 ORTHO05D003870 7.1e-12 73.2 47 76.6
Gorai.001G175900 Gossypium raimondii HOM05D000964 ORTHO05D003870 9.3e-12 72.8 49 77.6
Nitab4.5_0027992g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 9.3e-12 72.8 48 70.8
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.2e-11 72.4 47 74.5
Psat4g041080 Pisum sativum HOM05D000964 ORTHO05D003870 1.6e-11 72.0 47 74.5
Nn002s41360 Nelumbo nucifera HOM05D000964 ORTHO05D003870 2.1e-11 71.6 43 79.1
Cpa.g.sc54.35 Carica papaya HOM05D000964 ORTHO05D003870 2.7e-11 71.2 51 66.7
Nn070s42370 Nelumbo nucifera HOM05D000964 ORTHO05D003870 6.1e-11 70.1 42 81.0
Psat5g206520 Pisum sativum HOM05D000964 ORTHO05D003870 7.9e-11 69.7 47 74.5
Sc12g0008160 Simmondsia chinensis HOM05D000964 ORTHO05D003870 7.9e-11 69.7 47 72.3
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.0e-10 69.3 41 82.9
Medtr2g101550 Medicago truncatula HOM05D000964 ORTHO05D003870 1.3e-10 68.9 44 77.3
BolSC29t60486H Brassica oleracea HOM05D000964 ORTHO05D003870 1.8e-10 68.6 55 70.9
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 1.8e-10 68.6 40 82.5
Hund08595 Selenicereus undatus HOM05D000964 ORTHO05D003870 1.8e-10 68.6 51 66.7
Hund31324 Selenicereus undatus HOM05D000964 ORTHO05D003870 2.3e-10 68.2 47 70.2
Gohir.D11G030050 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.0e-10 67.8 46 73.9
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 3.9e-10 67.4 47 72.3
CAN.G1478.8 Capsicum annuum HOM05D000580 ORTHO05D001362 5.1e-10 67.0 39 76.9
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 5.1e-10 67.0 47 63.8
Gorai.007G032900 Gossypium raimondii HOM05D000964 ORTHO05D003870 6.7e-10 66.6 46 73.9
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 6.7e-10 66.6 55 69.1
MELO3C033569.2 Cucumis melo HOM05D000964 ORTHO05D003870 8.7e-10 66.2 47 72.3
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 1.9e-09 65.1 38 81.6
Nitab4.5_0000477g0110 Nicotiana tabacum HOM05D000964 ORTHO05D003870 5.7e-09 63.5 43 72.1
SEGI_01834 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.3e-08 62.4 47 61.7
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.6e-08 62.0 47 61.7
SEGI_09600 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.6e-08 62.0 47 61.7
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.6e-08 62.0 47 61.7
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.6e-08 62.0 47 61.7
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.6e-08 62.0 47 61.7
SEGI_30352 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.6e-08 62.0 47 61.7
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.6e-08 62.0 47 61.7
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.6e-08 62.0 47 61.7
Lalb_Chr18g0049591 Lupinus albus HOM05D000964 ORTHO05D003870 2.2e-08 61.6 47 68.1
Lalb_Chr23g0274231 Lupinus albus HOM05D000964 ORTHO05D003870 2.2e-08 61.6 47 68.1
SMO086G0047 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 4.8e-08 60.5 47 61.7
SEGI_23206 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.8e-08 60.5 47 59.6
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.8e-08 60.5 47 59.6
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.8e-08 60.5 47 59.6
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 8.2e-08 59.7 31 96.8
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 8.2e-08 59.7 31 96.8
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 8.2e-08 59.7 31 96.8
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.1e-07 59.3 47 59.6
Ah.07g203250 Amaranthus hybridus HOM05D000964 ORTHO05D003870 1.4e-07 58.9 42 73.8
HanXRQChr00c0593g0576351 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-07 58.5 31 93.5
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 1.8e-07 58.5 31 93.5
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 1.8e-07 58.5 31 93.5
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 1.8e-07 58.5 31 93.5
SalBow1G3145 Salvia bowleyana HOM05D000964 ORTHO05D003870 1.8e-07 58.5 31 93.5
SEGI_27642 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.8e-07 58.5 47 57.4
Psat3g134280 Pisum sativum HOM05D000964 ORTHO05D003870 9.0e-07 56.2 47 61.7
Lju5009C0T12 Lonicera japonica HOM05D000964 ORTHO05D003870 1.2e-06 55.8 37 75.7
EL10Ac4g08558 Beta vulgaris HOM05D000964 ORTHO05D003870 5.9e-06 53.5 31 90.3
arahy.Tifrunner.gnm1.ann1.8K1QWD Arachis hypogaea HOM05D000964 ORTHO05D003870 1.0e-05 52.8 27 96.3


User provided reference genes

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