Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC46t61001H Brassica oleracea HOM05D006976 ORTHO05D008761 4.3e-43 177.6 87 100.0
AL2G20664 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BcaC03g16543 Brassica carinata HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
A06p23180 Brassica napus HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
C09p40240 Brassica napus HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BolC9t56930H Brassica oleracea HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BolSC29t60590H Brassica oleracea HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BolSC35t60749H Brassica oleracea HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BolSC46t61034H Brassica oleracea HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BolSC47t61096H Brassica oleracea HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BraA06t25422Z Brassica rapa HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
BraSC25t45865Z Brassica rapa HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
Thhalv10010976m.g Eutrema salsugineum HOM05D006976 ORTHO05D008761 4.4e-40 167.5 81 100.0
ATCG00530 Arabidopsis thaliana HOM05D006976 ORTHO05D008761 6.4e-39 163.7 81 97.5
CARHR282110 Cardamine hirsuta HOM05D006976 ORTHO05D008761 6.4e-39 163.7 81 97.5
C02p43530 Brassica napus HOM05D006976 ORTHO05D008761 1.1e-35 152.9 82 93.9
Gohir.A09G041060 Gossypium hirsutum HOM05D006976 ORTHO05D008761 9.2e-30 133.3 81 81.5
Gohir.D01G101878 Gossypium hirsutum HOM05D006976 ORTHO05D008761 1.2e-29 132.9 81 80.2
Potri.016G094100 Populus trichocarpa HOM05D006976 ORTHO05D008761 1.2e-29 132.9 82 80.5
Potri.013G162300 Populus trichocarpa HOM05D006976 ORTHO05D008761 2.1e-29 132.1 80 81.2
SalBow1G3572 Salvia bowleyana HOM05D006976 ORTHO05D008761 2.7e-29 131.7 81 80.2
Eucgr.E02607 Eucalyptus grandis HOM05D006976 ORTHO05D008761 2.3e-28 128.6 81 77.8
RcHm_v2.0_CPg0502081 Rosa chinensis HOM05D006976 ORTHO05D008761 2.3e-28 128.6 81 77.8
CAN.G129.10 Capsicum annuum HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 75.3
HanXRQChr01g0020351 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr02g0044891 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr10g0283561 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr10g0284251 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr10g0289271 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr10g0318191 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr11g0326831 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr13g0421821 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr15g0497531 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr16g0528991 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQChr17g0548241 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
HanXRQCPg0580041 Helianthus annuus HOM05D006976 ORTHO05D008761 3.9e-28 127.9 81 77.8
Sed0001172 Sechium edule HOM05D006976 ORTHO05D008761 3.9e-28 127.9 82 78.0
Peaxi162Scf00413g00828 Petunia axillaris HOM05D000806 ORTHO05D002324 5.1e-28 127.5 81 75.3
BolSC49t61182H Brassica oleracea HOM05D006976 ORTHO05D008761 6.6e-28 127.1 61 100.0
Eucgr.E01114 Eucalyptus grandis HOM05D006976 ORTHO05D008761 6.6e-28 127.1 81 76.5
PGR111G0047 Punica granatum HOM05D006976 ORTHO05D008761 8.6e-28 126.7 81 76.5
HanXRQChr11g0345161 Helianthus annuus HOM05D006976 ORTHO05D008761 1.5e-27 125.9 81 76.5
Lj1P303T18 Lonicera japonica HOM05D006976 ORTHO05D008761 1.9e-27 125.6 81 76.5
GSVIVG01017636001 Vitis vinifera HOM05D006976 ORTHO05D008761 1.9e-27 125.6 81 75.3
DCAR_032496 Daucus carota HOM05D006976 ORTHO05D008761 2.5e-27 125.2 82 75.6
EL10Ac4g09265 Beta vulgaris HOM05D006976 ORTHO05D008761 3.3e-27 124.8 81 75.3
Lj2P1239T139 Lonicera japonica HOM05D006976 ORTHO05D008761 3.3e-27 124.8 81 76.5
Nn2g14969 Nelumbo nucifera HOM05D006976 ORTHO05D008761 3.3e-27 124.8 81 74.1
Prupe.7G029500 Prunus persica HOM05D006976 ORTHO05D008761 3.3e-27 124.8 81 76.5
PSO548G0011 Papaver somniferum HOM05D006976 ORTHO05D008761 4.3e-27 124.4 81 71.6
AL2G21560 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 5.6e-27 124.0 75 85.3
Nn010s41442 Nelumbo nucifera HOM05D006976 ORTHO05D008761 7.3e-27 123.6 85 71.8
Hund28750 Selenicereus undatus HOM05D006976 ORTHO05D008761 7.3e-27 123.6 81 74.1
Hund29806 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.3e-27 123.6 81 74.1
Hma1.2p1_1409F.1_g281660 Hydrangea macrophylla HOM05D006976 ORTHO05D008761 9.5e-27 123.2 81 75.3
GSVIVG01029875001 Vitis vinifera HOM05D006976 ORTHO05D008761 1.6e-26 122.5 81 75.3
Hund07993 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.8e-26 121.7 81 72.8
Solyc00g500020.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 2.3e-25 118.6 80 75.0
Solyc00g500067.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 2.3e-25 118.6 80 75.0
Medtr5g019520 Medicago truncatula HOM05D006976 ORTHO05D008761 4.0e-25 117.9 81 70.4
BNapus_Darmor_BZH_scaffold_253p00220 Brassica napus HOM05D000806 ORTHO05D002324 5.2e-25 117.5 56 100.0
HanXRQChr05g0161171 Helianthus annuus HOM05D006976 ORTHO05D008761 5.2e-25 117.5 81 74.1
arahy.Tifrunner.gnm1.ann1.Z0BJS7 Arachis hypogaea HOM05D000806 ORTHO05D002324 6.8e-25 117.1 81 71.6
CAN.G232.11 Capsicum annuum HOM05D006976 ORTHO05D008761 3.4e-24 114.8 81 66.7
Gohir.D02G130401 Gossypium hirsutum HOM05D006976 ORTHO05D008761 9.9e-24 113.2 81 72.8
HPP92_028424 Vanilla planifolia HOM05D006976 ORTHO05D008761 1.3e-23 112.8 85 65.9
Gohir.D07G097266 Gossypium hirsutum HOM05D006976 ORTHO05D008761 2.2e-23 112.1 77 72.7
Gorai.001G104700 Gossypium raimondii HOM05D006976 ORTHO05D008761 4.9e-23 110.9 77 71.4
Lalb_Chr18g0049641 Lupinus albus HOM05D006976 ORTHO05D008761 8.3e-23 110.2 77 71.4
Phvul.002G278108 Phaseolus vulgaris HOM05D006976 ORTHO05D008761 8.3e-23 110.2 81 66.7
TPR.G11768 Trifolium pratense HOM05D006976 ORTHO05D008761 2.4e-22 108.6 81 64.2
Migut.G01116 Erythranthe guttata HOM05D006976 ORTHO05D008761 4.1e-22 107.8 74 71.6
BolSC35t60647H Brassica oleracea HOM05D006976 ORTHO05D008761 1.2e-21 106.3 64 85.9
BraSC103t45467Z Brassica rapa HOM05D006976 ORTHO05D008761 1.6e-21 105.9 57 94.7
Oeu012774.1 Olea europaea HOM05D006976 ORTHO05D008761 1.6e-21 105.9 78 66.7
Eucgr.I02539 Eucalyptus grandis HOM05D006976 ORTHO05D008761 7.8e-21 103.6 81 67.9
arahy.Tifrunner.gnm1.ann1.Z0Q6DR Arachis hypogaea HOM05D006976 ORTHO05D008761 8.6e-20 100.1 63 77.8
Gorai.005G146300 Gossypium raimondii HOM05D006976 ORTHO05D008761 1.1e-19 99.8 75 68.0
Gorai.002G160100 Gossypium raimondii HOM05D006976 ORTHO05D008761 3.6e-18 94.7 61 77.0
FvH4_3g27991 Fragaria vesca HOM05D006976 ORTHO05D008761 1.1e-17 93.2 60 76.7
Medtr3g111320 Medicago truncatula HOM05D006976 ORTHO05D008761 8.9e-17 90.1 77 55.8
CAN.G16.7 Capsicum annuum HOM05D006976 ORTHO05D008761 2.0e-16 89.0 66 65.2
TPR.G15439 Trifolium pratense HOM05D006976 ORTHO05D008761 2.0e-16 89.0 70 61.4
EL10As15g24128 Beta vulgaris HOM05D000806 ORTHO05D002324 3.8e-15 84.7 55 74.5
HPP92_022279 Vanilla planifolia HOM05D006976 ORTHO05D008761 8.4e-15 83.6 65 61.5
GSVIVG01030620001 Vitis vinifera HOM05D006976 ORTHO05D008761 5.4e-14 80.9 53 75.5
Gorai.007G243600 Gossypium raimondii HOM05D000806 ORTHO05D002324 3.5e-13 78.2 51 76.5
TAR633G2101 Trochodendron aralioides HOM05D006976 ORTHO05D008761 7.8e-13 77.0 49 71.4
Lalb_Chr03g0039211 Lupinus albus HOM05D006976 ORTHO05D008761 2.3e-12 75.5 49 75.5
Psat0s2754g0120 Pisum sativum HOM05D000806 ORTHO05D002324 3.9e-12 74.7 84 51.2
Hund10572 Selenicereus undatus HOM05D006976 ORTHO05D008761 3.9e-12 74.7 66 56.1
Psat0s2288g0200 Pisum sativum HOM05D006976 ORTHO05D008761 1.1e-11 73.2 84 51.2
QL93p0999_0001 Quercus lobata HOM05D006976 ORTHO05D008761 2.5e-11 72.0 81 50.6
BraSC59t46590Z Brassica rapa HOM05D006976 ORTHO05D008761 3.3e-11 71.6 35 94.3
Glyma.07G028150 Glycine max HOM05D006976 ORTHO05D008761 3.3e-11 71.6 49 69.4
Lalb_Chr03g0036051 Lupinus albus HOM05D006976 ORTHO05D008761 2.8e-10 68.6 56 58.9
Nitab4.5_0010235g0040 Nicotiana tabacum HOM05D006976 ORTHO05D008761 2.0e-08 62.4 46 63.0
HanXRQChr02g0041581 Helianthus annuus HOM05D000806 ORTHO05D002324 5.8e-08 60.8 36 77.8


User provided reference genes

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