Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.7e-103 379.4 198 100.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.3e-95 353.2 198 96.5
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-95 353.2 198 96.5
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 2.9e-95 352.1 199 96.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-94 349.7 198 94.9
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-91 339.0 191 96.3
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 4.3e-91 338.2 197 93.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 6.4e-87 324.3 198 90.9
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 4.6e-85 318.2 198 88.9
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 4.6e-85 318.2 198 88.9
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-82 308.9 188 90.4
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 3.4e-80 302.0 198 83.8
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 1.6e-77 293.1 198 81.3
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 1.6e-77 293.1 198 81.3
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 2.1e-77 292.7 198 82.3
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 3.5e-77 292.0 198 81.8
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 7.9e-77 290.8 198 80.8
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 6.2e-74 281.2 198 79.3
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 8.1e-74 280.8 198 77.8
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 4.0e-73 278.5 194 79.4
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 5.3e-73 278.1 231 70.1
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 3.4e-72 275.4 194 78.4
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 9.9e-72 273.9 198 77.3
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 1.7e-71 273.1 198 76.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.4e-71 270.8 198 77.3
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 9.3e-70 267.3 188 78.7
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.5e-69 265.4 198 74.7
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.3e-68 262.7 194 76.8
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 3.0e-68 262.3 147 96.6
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 3.8e-63 245.4 144 93.8
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 3.8e-63 245.4 198 70.7
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 9.3e-62 240.7 136 97.1
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 6.3e-58 228.0 140 87.1
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 6.3e-58 228.0 140 87.1
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.1e-57 227.3 198 67.7
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-57 226.1 171 75.4
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-57 226.1 171 75.4
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-57 226.1 171 75.4
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-57 226.1 171 75.4
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-57 226.1 171 75.4
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 7.6e-56 221.1 133 89.5
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 3.5e-53 212.2 157 75.2
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.3e-52 210.3 133 85.0
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.3e-50 203.8 143 78.3
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 3.7e-50 202.2 145 77.9
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.1e-49 200.7 140 77.9
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.1e-49 200.7 140 77.9
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.1e-49 200.7 140 77.9
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 1.8e-49 199.9 145 75.9
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.6e-48 196.1 130 80.0
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 8.5e-47 191.0 133 78.2
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 1.4e-46 190.3 129 80.6
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 4.2e-46 188.7 122 83.6
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.2e-46 188.7 132 77.3
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 1.0e-44 184.1 130 76.2
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.4e-44 183.7 131 72.5
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 6.7e-44 181.4 150 72.7
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.8e-42 175.3 122 77.0
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 6.3e-42 174.9 97 94.8
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 8.2e-42 174.5 125 74.4
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.4e-41 172.9 154 68.2
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 3.1e-41 172.6 119 76.5
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.2e-40 170.6 119 77.3
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-40 170.6 198 54.0
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.5e-40 170.2 116 78.4
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 5.9e-40 168.3 96 96.9
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 5.9e-40 168.3 93 94.6
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.5e-38 162.9 106 81.1
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 5.5e-38 161.8 117 76.1
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 5.5e-38 161.8 117 76.1
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 5.5e-38 161.8 117 76.1
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 9.4e-38 161.0 92 95.7
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 9.4e-38 161.0 144 63.9
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.1e-37 158.3 114 74.6
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.4e-36 157.1 201 51.2
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 2.6e-35 152.9 108 75.9
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.6e-35 152.9 99 80.8
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 5.7e-35 151.8 117 74.4
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.7e-34 150.2 122 73.0
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 4.8e-34 148.7 106 76.4
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-34 148.3 146 61.6
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-33 146.7 145 60.7
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 5.3e-33 145.2 96 82.3
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 5.3e-33 145.2 96 82.3
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.6e-32 142.9 133 60.9
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.6e-32 142.9 133 60.9
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.5e-32 142.1 116 69.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 8.5e-31 137.9 91 78.0
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 4.2e-30 135.6 95 76.8
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 3.6e-29 132.5 135 59.3
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 6.1e-29 131.7 142 54.9
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 6.1e-29 131.7 149 57.7
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.0e-28 131.0 170 52.9
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.1e-27 127.5 116 68.1
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-26 124.0 70 91.4
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-24 117.5 78 87.2
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 5.5e-22 108.6 73 82.2
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 1.2e-21 107.5 54 100.0
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.2e-21 107.5 74 77.0
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 3.6e-21 105.9 62 91.9
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-20 104.4 67 80.6
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.0e-20 102.4 78 73.1
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 1.2e-19 100.9 119 55.5
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.5e-19 100.5 77 72.7
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.5e-19 98.2 69 76.8
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.8e-19 97.8 69 76.8
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.3e-18 97.4 76 64.5
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 1.7e-18 97.1 196 35.2
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 4.1e-17 92.4 74 68.9
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 1.2e-16 90.9 76 69.7
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.6e-16 90.5 69 72.5
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 2.0e-16 90.1 66 74.2
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.0e-16 90.1 69 71.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 1.3e-15 87.4 72 72.2
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 2.9e-15 86.3 50 90.0
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 6.5e-15 85.1 62 71.0
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.1e-14 84.3 50 88.0
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 9.4e-14 81.3 95 54.7
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.6e-13 80.5 50 84.0
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.1e-13 80.1 50 84.0
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.1e-13 80.1 54 79.6
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 4.7e-13 79.0 76 60.5
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-12 77.4 50 84.0
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 8.8e-12 74.7 52 78.8
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 4.4e-11 72.4 49 79.6
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 5.7e-11 72.0 97 51.5
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.3e-10 70.9 68 55.9
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.4e-09 67.4 59 64.4
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 1.8e-09 67.0 52 71.2
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.8e-09 67.0 42 81.0
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 9.2e-09 64.7 40 82.5
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-08 64.3 62 61.3
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.2e-08 64.3 62 61.3
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.2e-08 64.3 41 82.9
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 5.9e-08 62.0 52 69.2
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.7e-07 60.5 39 79.5
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.7e-07 60.5 39 79.5
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 3.8e-07 59.3 81 46.9
SEGI_17353 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 4.3e-06 55.8 47 61.7


User provided reference genes

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