Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 3.7e-103 378.3 197 100.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 3.5e-101 371.7 197 99.5
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 8.0e-98 360.5 197 98.5
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 8.0e-98 360.5 197 98.5
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 5.8e-96 354.4 196 97.4
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 2.9e-95 352.1 199 96.0
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.0e-93 345.9 190 98.4
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 5.2e-89 331.3 197 91.9
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 1.3e-87 326.6 197 89.8
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 1.3e-87 326.6 197 89.8
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 5.1e-84 314.7 187 91.4
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 2.1e-82 309.3 197 84.3
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 5.8e-80 301.2 197 81.7
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 5.8e-80 301.2 197 81.7
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 2.2e-79 299.3 197 82.7
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 4.9e-79 298.1 197 82.2
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.1e-78 297.0 197 81.2
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 3.0e-76 288.9 229 70.3
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 5.1e-76 288.1 197 79.2
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 1.5e-75 286.6 197 78.7
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 3.3e-75 285.4 197 78.2
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 5.6e-75 284.6 193 79.8
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 8.1e-74 280.8 193 78.8
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.1e-73 280.4 197 77.7
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.8e-73 277.7 197 76.1
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-72 276.9 197 77.7
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 3.4e-72 275.4 187 79.7
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 4.4e-72 275.0 190 78.9
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.2e-71 272.7 146 100.0
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 2.4e-65 252.7 197 70.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-63 246.5 143 94.4
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 3.2e-62 242.3 135 97.8
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.6e-61 240.0 197 69.0
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 5.1e-60 235.0 139 89.2
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 5.1e-60 235.0 139 89.2
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 8.7e-60 234.2 170 75.9
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 8.7e-60 234.2 170 75.9
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 8.7e-60 234.2 170 75.9
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 8.7e-60 234.2 170 75.9
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 8.7e-60 234.2 170 75.9
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 2.1e-58 229.6 132 91.7
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 4.9e-55 218.4 132 86.4
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 4.9e-55 218.4 142 81.0
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 4.6e-53 211.8 142 80.3
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 6.7e-52 208.0 144 79.9
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.7e-52 208.0 139 79.9
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.7e-52 208.0 139 79.9
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.7e-52 208.0 139 79.9
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 1.5e-51 206.8 144 77.8
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.7e-50 202.2 129 82.2
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.2e-48 197.2 121 86.0
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 1.5e-48 196.8 132 79.5
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 4.5e-48 195.3 128 82.0
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.8e-48 194.9 131 79.4
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 8.4e-47 191.0 129 78.3
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.4e-46 190.3 130 73.8
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 3.2e-46 189.1 149 73.2
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.2e-46 188.7 152 70.4
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 4.6e-45 185.3 96 100.0
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-44 183.7 121 79.3
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 6.7e-44 181.4 124 76.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.1e-43 180.6 118 78.8
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 4.3e-43 178.7 92 100.0
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.6e-43 177.6 198 57.1
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 2.1e-42 176.4 118 78.8
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.8e-42 176.0 115 80.0
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.5e-40 170.2 126 72.2
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 2.0e-40 169.9 95 94.7
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.6e-40 169.5 105 83.8
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 4.5e-40 168.7 116 78.4
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 4.5e-40 168.7 116 78.4
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 4.5e-40 168.7 116 78.4
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.5e-39 164.9 113 77.0
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 9.3e-38 161.0 98 83.7
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-37 160.6 107 78.5
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.1e-37 159.8 199 51.3
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.6e-37 158.7 116 76.7
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 6.1e-37 158.3 92 94.6
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 7.9e-37 157.9 134 69.4
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 1.8e-36 156.8 105 79.0
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 5.1e-36 155.2 145 63.4
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.9e-35 153.3 95 85.3
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.9e-35 153.3 95 85.3
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-34 150.6 144 62.5
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 3.7e-34 149.1 132 62.9
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 3.7e-34 149.1 132 62.9
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.8e-33 146.7 116 69.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 6.9e-33 144.8 90 81.1
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 9.0e-33 144.4 94 79.8
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 2.9e-31 139.4 134 59.7
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 3.8e-31 139.0 148 58.8
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 5.0e-31 138.7 141 56.0
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 3.2e-30 136.0 70 97.1
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 3.2e-30 136.0 169 53.8
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.6e-29 133.7 101 75.2
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-25 120.9 78 89.7
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 3.4e-24 115.9 61 100.0
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 2.2e-23 113.2 73 79.5
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 3.8e-23 112.5 76 80.3
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-22 110.5 66 84.8
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.5e-22 108.6 77 76.6
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 1.2e-21 107.5 54 100.0
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.1e-21 106.7 76 76.3
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-20 104.0 68 80.9
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 3.9e-20 102.4 195 35.4
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.1e-20 102.1 68 77.9
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 1.1e-19 100.9 119 54.6
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.6e-19 99.8 76 68.4
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 3.3e-19 99.4 73 72.6
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 5.7e-19 98.6 65 78.5
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.2e-18 94.7 68 75.0
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.1e-17 92.8 68 72.1
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 5.3e-17 92.0 61 75.4
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 7.0e-17 91.7 71 73.2
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 1.2e-16 90.9 57 86.0
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 1.3e-15 87.4 44 93.2
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 2.9e-15 86.3 94 56.4
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 5.0e-15 85.5 44 90.9
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-14 84.0 53 81.1
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 5.5e-14 82.0 75 62.7
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.2e-14 81.6 44 88.6
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 7.2e-14 81.6 44 86.4
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.4e-14 81.3 44 86.4
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 4.7e-13 79.0 96 54.2
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 3.9e-12 75.9 46 80.4
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 8.8e-12 74.7 58 69.0
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 1.1e-11 74.3 42 83.3
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.5e-11 73.9 68 58.8
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.7e-11 72.0 41 82.9
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.2e-10 68.2 61 62.3
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.2e-10 68.2 61 62.3
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 8.2e-10 68.2 46 71.7
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 4.1e-09 65.9 41 80.5
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-08 64.3 38 81.6
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-08 64.3 38 81.6
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.2e-08 64.3 41 82.9
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 2.6e-08 63.2 45 71.1
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 4.5e-08 62.4 80 50.0
SEGI_17353 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 4.2e-06 55.8 47 61.7


User provided reference genes

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