Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 2.6e-96 355.5 200 100.0
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 7.4e-75 284.3 200 81.5
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 9.7e-75 283.9 157 90.4
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 8.8e-68 260.8 200 70.0
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.4e-60 236.9 172 74.4
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 4.8e-58 228.4 163 82.8
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 2.3e-47 193.0 153 80.4
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 5.0e-47 191.8 153 79.1
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 5.0e-47 191.8 153 79.1
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.1e-46 190.7 153 78.4
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 2.1e-45 186.4 152 78.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.0e-44 182.6 154 70.1
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 4.4e-43 178.7 153 64.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 4.4e-43 178.7 153 64.7
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 1.3e-42 177.2 152 71.7
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.8e-41 173.3 173 71.7
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 3.1e-41 172.6 152 65.1
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 4.1e-41 172.2 152 61.8
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 3.5e-40 169.1 161 64.0
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 3.5e-40 169.1 155 60.6
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 5.0e-39 165.2 155 61.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-37 160.2 153 71.2
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.6e-37 160.2 153 71.2
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 2.8e-37 159.5 153 70.6
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 2.3e-36 156.4 107 75.7
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 4.4e-35 152.1 113 81.4
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-31 140.2 152 56.6
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 3.9e-31 139.0 152 55.9
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 8.0e-29 131.3 164 47.6
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.8e-28 130.2 164 62.2
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 5.2e-28 128.6 160 48.1
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.2e-28 128.6 160 51.9
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 6.8e-28 128.3 163 50.3
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.8e-28 128.3 164 53.0
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 6.8e-28 128.3 164 53.0
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.2e-27 127.5 164 52.4
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.2e-27 127.5 93 71.0
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.2e-27 127.5 154 53.2
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.5e-27 127.1 154 58.4
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.5e-27 127.1 166 48.2
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.5e-27 127.1 164 59.1
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.6e-27 126.3 166 45.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 4.4e-27 125.6 164 61.6
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 5.8e-27 125.2 154 57.1
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 5.8e-27 125.2 99 66.7
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 9.8e-27 124.4 109 61.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.2e-26 123.2 154 46.8
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.2e-26 123.2 99 64.6
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 2.2e-26 123.2 161 60.9
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.9e-26 122.9 125 58.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.9e-26 122.9 92 67.4
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.9e-26 122.9 158 58.2
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 3.7e-26 122.5 106 63.2
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 6.4e-26 121.7 161 46.6
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.4e-26 121.7 92 67.4
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 6.4e-26 121.7 94 64.9
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 8.3e-26 121.3 115 58.3
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-25 120.9 110 59.1
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.4e-25 120.6 165 60.0
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.4e-25 120.6 165 60.0
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.9e-25 120.2 100 63.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 5.4e-25 118.6 109 61.5
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 5.4e-25 118.6 109 58.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.4e-25 118.6 110 58.2
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 5.4e-25 118.6 108 61.1
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 5.4e-25 118.6 108 60.2
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 5.4e-25 118.6 103 62.1
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.0e-25 118.2 172 46.5
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 7.0e-25 118.2 92 65.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 9.2e-25 117.9 97 64.9
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.2e-24 117.5 164 50.0
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.0e-24 116.7 157 60.5
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 2.0e-24 116.7 99 60.6
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.7e-24 116.3 164 44.5
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.7e-24 116.3 167 49.7
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 2.7e-24 116.3 160 55.0
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 3.5e-24 115.9 87 67.8
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 3.5e-24 115.9 87 67.8
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 3.5e-24 115.9 89 66.3
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 4.6e-24 115.5 155 46.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.6e-24 115.5 99 62.6
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 6.0e-24 115.2 149 60.4
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 6.0e-24 115.2 94 64.9
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 6.0e-24 115.2 160 57.5
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 6.0e-24 115.2 100 62.0
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.0e-24 115.2 92 63.0
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 6.0e-24 115.2 99 63.6
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.8e-24 114.8 165 58.2
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.8e-24 114.8 162 48.8
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 7.8e-24 114.8 99 62.6
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.0e-23 114.4 99 59.6
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.0e-23 114.4 176 44.9
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 1.3e-23 114.0 112 57.1
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.3e-23 114.0 94 64.9
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.7e-23 113.6 105 60.0
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.7e-23 113.6 106 57.5
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.7e-23 113.6 94 61.7
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.7e-23 113.6 113 59.3
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 1.7e-23 113.6 159 45.3
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.7e-23 113.6 92 65.2
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.3e-23 113.2 100 59.0
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 3.0e-23 112.8 94 66.0
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 3.9e-23 112.5 105 57.1
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 3.9e-23 112.5 95 62.1
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.0e-23 112.1 99 58.6
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 5.0e-23 112.1 89 62.9
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.0e-23 112.1 156 44.2
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 5.0e-23 112.1 107 57.0
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 6.6e-23 111.7 95 60.0
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 8.6e-23 111.3 99 58.6
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.1e-22 110.9 88 65.9
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.1e-22 110.9 111 55.9
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.1e-22 110.9 106 57.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.5e-22 110.5 106 57.5
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 1.5e-22 110.5 96 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.9e-22 110.2 114 52.6
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 2.5e-22 109.8 159 49.1
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.3e-22 109.4 92 63.0
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 3.3e-22 109.4 96 60.4
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 4.3e-22 109.0 75 73.3
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.3e-22 109.0 94 61.7
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 4.3e-22 109.0 91 61.5
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.6e-22 108.6 82 64.6
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.6e-22 108.6 82 64.6
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 5.6e-22 108.6 94 60.6
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 5.6e-22 108.6 76 71.1
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 7.3e-22 108.2 167 44.3
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 7.3e-22 108.2 110 52.7
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.5e-22 107.8 176 42.0
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.6e-21 107.1 95 60.0
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.1e-21 106.7 75 72.0
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.8e-21 106.3 180 41.7
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.8e-21 106.3 180 41.7
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.8e-21 106.3 75 72.0
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.7e-21 105.5 75 70.7
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.7e-21 105.5 75 70.7
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 4.7e-21 105.5 75 70.7
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 4.7e-21 105.5 75 69.3
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 8.1e-21 104.8 75 69.3
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.1e-20 104.4 89 59.6
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.3e-20 103.2 75 69.3
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 2.3e-20 103.2 75 69.3
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 5.2e-20 102.1 75 66.7
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 5.2e-20 102.1 75 66.7
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 6.8e-20 101.7 75 66.7
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.7e-18 95.9 79 58.2
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 4.3e-14 82.4 104 48.1
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.1e-13 80.1 119 47.1
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 7.6e-11 71.6 55 63.6
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 6.0e-08 62.0 37 75.7


User provided reference genes

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