Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t53418H Brassica oleracea HOM05D009323 ORTHO05D012741 7.8e-163 577.0 282 100.0
C09p04900 Brassica napus HOM05D009323 ORTHO05D012741 2.5e-161 572.0 282 98.9
BraA09t36094Z Brassica rapa HOM05D009323 ORTHO05D012741 1.1e-151 540.0 283 94.0
BcaC04g23767 Brassica carinata HOM05D009323 ORTHO05D012741 1.1e-121 440.3 215 98.6
A09p04590 Brassica napus HOM05D009323 ORTHO05D012741 2.0e-113 412.9 216 93.1
BcaB04g19582 Brassica carinata HOM05D009323 ORTHO05D012741 5.3e-103 378.3 220 87.3
AT5G48657 Arabidopsis thaliana HOM05D009323 ORTHO05D012741 1.0e-85 320.9 278 66.2
A06p39000 Brassica napus HOM05D009323 ORTHO05D012741 1.4e-79 300.4 222 72.1
Thhalv10004864m.g Eutrema salsugineum HOM05D009323 ORTHO05D012741 2.9e-77 292.7 223 69.1
Carub.0008s0835 Capsella rubella HOM05D009323 ORTHO05D012741 1.9e-76 290.0 220 70.0
C07p39330 Brassica napus HOM05D009323 ORTHO05D012741 7.2e-76 288.1 219 70.8
BolC7t44453H Brassica oleracea HOM05D009323 ORTHO05D012741 7.2e-76 288.1 219 70.8
AL8G21710 Arabidopsis lyrata HOM05D009323 ORTHO05D012741 2.3e-74 283.1 220 70.0
CARHR183260 Cardamine hirsuta HOM05D009323 ORTHO05D012741 2.3e-74 283.1 220 68.2
Sp2g19070 Schrenkiella parvula HOM05D009323 ORTHO05D012741 8.3e-72 274.6 223 69.1
BcaC06g30771 Brassica carinata HOM05D009323 ORTHO05D012741 3.4e-65 252.7 224 64.7
BraA06t26814Z Brassica rapa HOM05D009323 ORTHO05D012741 1.7e-64 250.4 190 71.1
Aa31sc571G10 Aethionema arabicum HOM05D009323 ORTHO05D012741 3.0e-53 213.0 226 59.7
Carub.0003s0671 Capsella rubella HOM05D009323 ORTHO05D015248 2.9e-32 143.3 237 45.1
THA.LOC104818969 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 9.6e-28 128.3 221 41.2
BolC3t16543H Brassica oleracea HOM05D009323 ORTHO05D015248 1.3e-27 127.9 221 43.0
A03p35140 Brassica napus HOM05D009323 ORTHO05D015248 1.6e-27 127.5 221 43.0
BraA03t12694Z Brassica rapa HOM05D009323 ORTHO05D015248 1.8e-26 124.0 221 42.5
THA.LOC104802661 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 1.5e-25 120.9 236 40.7
CARHR081840 Cardamine hirsuta HOM05D009323 ORTHO05D015248 1.7e-24 117.5 218 41.7
Thhalv10021478m.g Eutrema salsugineum HOM05D009323 ORTHO05D015248 1.8e-21 107.5 231 40.3
Sp3g06140 Schrenkiella parvula HOM05D009323 ORTHO05D015248 4.3e-20 102.8 218 37.2
BcaC05g29747 Brassica carinata HOM05D002516 ORTHO05D002703 4.8e-19 99.4 228 37.3
Aa31LG5G17760 Aethionema arabicum HOM05D009323 ORTHO05D015248 1.4e-18 97.8 207 37.2
AL3G18460 Arabidopsis lyrata HOM05D009323 ORTHO05D015248 3.4e-17 93.2 237 38.8
BcaC05g29849 Brassica carinata HOM05D002516 ORTHO05D002703 1.9e-15 87.4 213 37.1
AT3G07195 Arabidopsis thaliana HOM05D009323 ORTHO05D015248 4.2e-15 86.3 235 35.7
BolC5t34668H Brassica oleracea HOM05D009323 ORTHO05D015248 4.2e-15 86.3 222 36.0
Potri.002G245400 Populus trichocarpa HOM05D002186 ORTHO05D002225 3.3e-12 76.6 272 31.6
BraA05t22828Z Brassica rapa HOM05D002516 ORTHO05D002703 4.3e-12 76.3 199 36.2
A05p41010 Brassica napus HOM05D002516 ORTHO05D002703 2.8e-11 73.6 198 35.4
Thecc.01G221600 Theobroma cacao HOM05D002186 ORTHO05D002225 2.8e-11 73.6 271 32.5
GSVIVG01004747001 Vitis vinifera HOM05D002186 ORTHO05D002225 1.4e-10 71.2 225 34.2
Duzib133G1090 Durio zibethinus HOM05D002186 ORTHO05D002225 1.8e-10 70.9 271 33.6
Actinidia09472 Actinidia chinensis HOM05D002186 ORTHO05D002225 3.1e-10 70.1 277 31.0
QL09p051777 Quercus lobata HOM05D002186 ORTHO05D002225 6.9e-10 68.9 270 30.7
C03p42750 Brassica napus HOM05D009323 ORTHO05D015248 1.2e-09 68.2 57 57.9
Duzib138G0625 Durio zibethinus HOM05D002186 ORTHO05D002225 1.2e-09 68.2 270 30.7
QL09p052490 Quercus lobata HOM05D002186 ORTHO05D002225 3.4e-09 66.6 272 30.1
Sabra02G0186700 Salix brachista HOM05D002186 ORTHO05D002225 3.4e-09 66.6 270 31.1
MSTRG.20966 Avicennia marina HOM05D002186 ORTHO05D002225 4.5e-09 66.2 260 33.1
Gorai.001G232400 Gossypium raimondii HOM05D002186 ORTHO05D002225 5.9e-09 65.9 266 28.2
Dinv19181 Davidia involucrata HOM05D002186 ORTHO05D002225 7.6e-09 65.5 172 38.4
Migut.N00628 Erythranthe guttata HOM05D002186 ORTHO05D002225 7.6e-09 65.5 247 29.1
Atru.chr6.1419 Acer truncatum HOM05D002186 ORTHO05D002225 1.0e-08 65.1 266 29.3
Gohir.D07G206100 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.3e-08 64.7 266 27.8
TAR636G0289 Trochodendron aralioides HOM05D002186 ORTHO05D002225 1.3e-08 64.7 276 31.2
Gohir.D08G212670 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.7e-08 64.3 278 30.6
Gorai.004G226600 Gossypium raimondii HOM05D002186 ORTHO05D002225 1.7e-08 64.3 278 30.6
COL.COLO4_15629 Corchorus olitorius HOM05D002186 ORTHO05D002225 2.2e-08 63.9 268 29.9
MD10G1160600 Malus domestica HOM05D002186 ORTHO05D002225 2.2e-08 63.9 257 32.3
Dinv12658 Davidia involucrata HOM05D002186 ORTHO05D002225 2.9e-08 63.5 176 34.1
CSS0016957 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 3.8e-08 63.2 265 31.3
CSS0037554 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 3.8e-08 63.2 265 31.3
Gohir.A07G199700 Gossypium hirsutum HOM05D002186 ORTHO05D002225 3.8e-08 63.2 266 28.9
Gohir.A08G195300 Gossypium hirsutum HOM05D002186 ORTHO05D002225 3.8e-08 63.2 267 31.5
PGSC0003DMG400027945 Solanum tuberosum HOM05D002186 ORTHO05D002225 5.0e-08 62.8 264 29.2
AT3G25070 Arabidopsis thaliana HOM05D002186 ORTHO05D002225 1.1e-07 61.6 229 30.6
RcHm_v2.0_Chr6g0284211 Rosa chinensis HOM05D002186 ORTHO05D002225 1.9e-07 60.8 263 30.8
AL3G40780 Arabidopsis lyrata HOM05D002186 ORTHO05D002225 2.5e-07 60.5 231 31.2
CiPaw.02G022900 Carya illinoinensis HOM05D002186 ORTHO05D002225 2.5e-07 60.5 256 31.2
Sopen09g022570 Solanum pennellii HOM05D002186 ORTHO05D002225 2.5e-07 60.5 261 27.2
Carub.0003s2542 Capsella rubella HOM05D002186 ORTHO05D002225 3.2e-07 60.1 227 33.0
BcaC01g03246 Brassica carinata HOM05D002186 ORTHO05D002225 4.2e-07 59.7 216 31.0
Aa31LG8G11940 Aethionema arabicum HOM05D002186 ORTHO05D002225 5.5e-07 59.3 214 29.0
C05p60160 Brassica napus HOM05D002516 ORTHO05D002703 5.5e-07 59.3 64 54.7
Hma1.2p1_0149F.1_g066350 Hydrangea macrophylla HOM05D002186 ORTHO05D002225 5.5e-07 59.3 237 30.0
FvH4_2g18650 Fragaria vesca HOM05D002186 ORTHO05D002225 7.2e-07 58.9 264 29.9
FAN24G2024 Fragaria x ananassa HOM05D002186 ORTHO05D002225 7.2e-07 58.9 264 29.9
MSTRG.17997 Avicennia marina HOM05D002186 ORTHO05D002225 9.3e-07 58.5 248 29.4
CARHR101410 Cardamine hirsuta HOM05D002186 ORTHO05D002225 9.3e-07 58.5 233 30.0
THA.LOC104821655 Tarenaya hassleriana HOM05D002186 ORTHO05D002225 9.3e-07 58.5 231 30.7
Haze_15037 Corylus avellana HOM05D002186 ORTHO05D002225 1.2e-06 58.2 276 29.7
TWI36G0241 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 1.6e-06 57.8 273 28.9
DCAR_004726 Daucus carota HOM05D002186 ORTHO05D002225 4.6e-06 56.2 172 32.6
Duzib211G0360 Durio zibethinus HOM05D002186 ORTHO05D002225 4.6e-06 56.2 271 30.3
Glyma.16G090700 Glycine max HOM05D002186 ORTHO05D002225 4.6e-06 56.2 123 34.1
Lj2A1127T51 Lonicera japonica HOM05D002186 ORTHO05D002225 4.6e-06 56.2 242 30.2
A03p44020 Brassica napus HOM05D002186 ORTHO05D002225 6.1e-06 55.8 215 30.2
TPR.G6437 Trifolium pratense HOM05D002186 ORTHO05D002225 6.1e-06 55.8 266 25.2
MD05G1172400 Malus domestica HOM05D002186 ORTHO05D002225 7.9e-06 55.5 261 31.4


User provided reference genes

Program Settings