Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.3e-288 995.7 508 100.0
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 8.8e-282 973.0 508 97.4
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.4e-266 922.5 510 93.5
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-265 919.5 510 93.3
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 9.2e-247 856.7 518 85.5
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 6.2e-243 844.0 518 84.6
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 4.0e-242 841.3 510 84.9
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.9e-237 824.7 510 86.3
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.4e-234 815.5 518 83.2
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.3e-229 798.9 518 81.3
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 3.9e-229 798.1 518 80.5
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.4e-218 762.3 519 76.9
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.3e-205 719.2 519 74.2
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.6e-203 713.0 519 73.6
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 4.0e-202 708.4 519 73.4
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 4.0e-202 708.4 519 73.2
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.5e-201 704.9 519 72.1
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.3e-200 703.4 525 72.0
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 2.1e-198 696.0 519 71.7
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 6.0e-198 694.5 519 71.5
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 7.9e-198 694.1 526 70.9
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.0e-197 693.7 519 72.1
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.0e-197 692.2 519 71.7
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 9.7e-196 687.2 522 70.7
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.7e-195 685.3 528 67.2
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 3.7e-195 685.3 528 67.0
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.1e-194 683.7 528 67.0
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.8e-194 682.9 528 67.4
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.0e-193 679.5 509 72.1
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 8.5e-192 674.1 521 67.0
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 3.2e-191 672.2 538 67.1
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 2.7e-190 669.1 528 66.9
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 7.9e-190 667.5 528 66.1
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 2.0e-188 662.9 529 65.2
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 2.2e-187 659.4 528 65.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 2.2e-187 659.4 526 66.0
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 3.7e-187 658.7 524 64.3
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 6.9e-186 654.4 527 64.1
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 6.9e-186 654.4 528 65.0
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 9.1e-186 654.1 529 64.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.2e-185 653.7 529 65.6
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.9e-183 646.4 528 65.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.2e-183 645.6 528 64.2
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 3.2e-183 645.6 533 62.5
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 7.2e-183 644.4 511 63.4
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 7.2e-183 644.4 529 64.7
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 9.4e-183 644.0 524 64.3
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.7e-182 641.7 527 65.1
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 7.9e-182 641.0 528 64.6
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 2.3e-181 639.4 530 64.5
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 2.3e-181 639.4 528 64.8
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 3.9e-181 638.6 530 62.3
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 8.8e-181 637.5 528 63.6
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 1.1e-180 637.1 523 64.4
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 2.0e-180 636.3 522 65.7
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 3.3e-180 635.6 528 63.3
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 5.7e-180 634.8 528 64.6
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 9.7e-180 634.0 523 65.2
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 4.8e-179 631.7 520 65.2
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 8.2e-179 630.9 528 65.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 3.1e-178 629.0 526 63.1
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.2e-177 627.1 529 63.1
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.5e-177 625.2 530 62.6
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.9e-177 624.8 521 63.5
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 2.9e-176 622.5 527 63.2
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 8.5e-176 620.9 528 62.9
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 9.4e-175 617.5 571 59.2
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 9.4e-175 617.5 575 59.1
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 3.6e-174 615.5 513 62.6
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 8.0e-174 614.4 516 63.8
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.0e-173 614.0 519 62.2
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 1.4e-173 613.6 527 62.4
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.4e-173 613.6 525 63.4
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.4e-173 613.6 525 63.4
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 5.2e-173 611.7 509 63.3
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 5.2e-173 611.7 531 62.5
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.0e-172 609.8 531 62.3
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 2.0e-172 609.8 514 61.3
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 3.3e-172 609.0 518 63.5
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 5.7e-172 608.2 513 62.8
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 7.4e-172 607.8 506 62.8
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 7.4e-172 607.8 531 60.3
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.7e-171 606.7 516 61.2
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 2.2e-171 606.3 527 60.9
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 6.3e-171 604.7 520 61.3
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.4e-170 603.6 538 59.1
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 3.1e-170 602.4 527 62.6
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.3e-168 597.0 516 60.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.9e-168 595.9 473 65.5
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 4.0e-165 585.5 521 59.3
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 6.3e-163 578.2 502 62.0
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 2.0e-161 573.2 514 61.7
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.2e-159 565.8 521 60.1
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 7.2e-159 564.7 512 57.6
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 3.0e-157 559.3 528 57.2
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 6.8e-157 558.1 515 59.0
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.0e-152 544.3 516 57.9
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 7.2e-151 538.1 516 56.4
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.6e-150 537.0 528 55.1
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.0e-149 534.3 560 53.8
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.8e-149 533.5 516 57.2
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 3.0e-149 532.7 531 55.2
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 2.6e-148 529.6 434 62.2
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.4e-148 528.9 516 57.4
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.5e-145 518.8 445 62.2
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.9e-143 513.5 420 62.6
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 8.3e-139 498.0 526 54.8
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.3e-136 490.7 499 53.3
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 5.0e-136 488.8 467 57.6
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 8.3e-123 444.9 452 54.9
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.4e-114 417.5 544 44.7
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.3e-112 411.0 353 62.6
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 5.6e-111 405.6 531 44.6
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 7.3e-111 405.2 502 45.0
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 3.2e-106 389.8 406 55.9
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 7.1e-106 388.7 384 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 7.1e-98 362.1 484 43.2
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.3e-83 314.7 484 42.8
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 2.9e-59 233.8 277 51.3
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.5e-50 204.9 139 73.4
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 1.2e-41 175.3 447 35.8
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 6.3e-38 162.9 128 64.8
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 5.9e-36 156.4 151 61.6
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-27 128.3 98 71.4
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-23 113.2 143 38.5
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.1e-21 107.1 79 67.1
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 9.2e-21 105.9 72 63.9
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 6.0e-20 103.2 72 63.9
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.9e-18 98.2 72 69.4
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.8e-17 94.4 68 61.8
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 9.8e-15 85.9 249 29.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.9e-11 73.9 81 58.0
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-08 63.9 58 50.0
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 2.0e-07 61.6 45 68.9


User provided reference genes

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