Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 0.0e+00 1180.6 602 100.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1179.1 602 99.8
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1176.8 602 99.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 0.0e+00 1161.4 602 97.5
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1156.4 603 97.2
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1128.2 603 95.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 0.0e+00 1078.2 602 91.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 4.1e-312 1074.3 605 91.1
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.1e-302 1042.7 603 87.7
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 7.7e-301 1036.6 605 87.3
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.7e-298 1028.1 602 87.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.5e-296 1022.3 604 85.8
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 8.6e-276 953.4 610 81.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.1e-253 879.0 614 73.0
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.7e-244 849.4 607 70.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 8.7e-236 820.5 615 68.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-235 819.7 615 66.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.3e-235 818.1 613 66.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.6e-234 816.2 615 66.7
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.6e-234 816.2 613 67.9
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.6e-234 815.1 615 67.3
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.1e-233 813.5 622 65.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.8e-233 812.8 612 67.0
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.1e-233 812.0 624 66.3
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.2e-232 810.1 614 67.6
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.6e-232 808.9 613 65.9
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.6e-232 808.9 613 65.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 4.4e-232 808.1 616 65.3
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.7e-231 806.2 615 66.8
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 2.2e-231 805.8 613 66.4
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.9e-231 805.4 609 66.7
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.9e-231 805.4 620 66.3
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.9e-230 802.7 614 67.6
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.9e-230 802.7 614 67.6
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.9e-230 802.7 616 66.9
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.4e-230 802.4 613 66.2
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 3.2e-230 802.0 614 65.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 7.1e-230 800.8 607 66.6
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 7.1e-230 800.8 613 65.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 9.3e-230 800.4 616 66.4
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.5e-229 798.5 614 67.3
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 6.0e-229 797.7 615 65.4
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.9e-229 797.3 619 64.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.3e-228 796.6 613 66.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.7e-228 796.2 615 65.2
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 5.1e-228 794.7 614 66.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 8.7e-228 793.9 620 65.8
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.9e-227 792.7 615 65.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.5e-227 792.3 617 64.3
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 5.6e-227 791.2 619 64.5
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.3e-226 790.0 612 65.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.8e-225 786.2 616 64.9
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.8e-225 786.2 613 65.7
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.0e-225 785.0 615 64.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.9e-223 778.9 613 64.9
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.9e-223 778.9 615 64.7
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 3.8e-223 778.5 613 64.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 6.4e-223 777.7 625 63.4
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.4e-222 776.5 618 63.8
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.9e-222 776.2 600 65.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 7.1e-222 774.2 612 63.6
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 4.6e-221 771.5 614 63.7
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.8e-220 769.6 614 63.4
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 8.7e-220 767.3 611 63.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.1e-219 766.9 614 62.5
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.1e-219 766.9 689 58.5
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.5e-219 766.5 595 64.9
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.9e-219 766.1 612 64.2
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 8.1e-218 760.8 604 64.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.8e-217 759.6 609 63.5
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.3e-215 753.4 606 64.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.9e-215 751.5 565 65.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 6.5e-215 751.1 601 62.9
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 7.1e-214 747.7 571 65.7
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 3.9e-212 741.9 742 55.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 3.3e-211 738.8 602 63.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.8e-209 733.0 612 60.9
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.4e-208 728.8 612 60.6
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.9e-207 725.7 609 61.9
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 9.3e-206 720.7 573 62.7
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.5e-205 718.8 609 61.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.9e-203 713.0 606 59.9
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.5e-203 712.6 574 65.2
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.2e-202 709.5 548 65.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 2.8e-202 709.1 549 64.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.8e-201 706.4 592 61.5
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.5e-190 668.3 611 57.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 9.4e-182 641.0 615 54.8
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.6e-179 632.9 505 63.6
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 9.1e-177 624.4 615 53.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.6e-173 613.6 609 56.2
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.0e-167 592.0 678 47.6
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 5.9e-160 568.5 527 56.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.9e-154 549.7 685 47.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.9e-145 520.4 488 57.2
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-142 511.1 504 54.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 6.4e-138 495.4 389 64.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-135 485.7 370 64.1
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.7e-133 479.2 360 65.3
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.4e-121 441.0 360 63.9
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 5.4e-121 439.1 430 56.7
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 9.3e-113 411.8 365 59.5
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.3e-103 381.3 321 61.1
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 3.0e-103 380.2 645 38.1
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-102 375.2 377 53.8
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.0e-98 365.2 258 68.6
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 8.4e-98 362.1 258 69.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 4.8e-93 346.3 245 69.0
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.0e-92 342.0 257 66.1
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.7e-82 311.2 232 66.4
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 6.1e-80 302.8 634 33.9
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 3.2e-73 280.4 179 72.6
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-55 221.5 218 53.7
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-54 217.6 232 52.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-45 188.0 178 55.1
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 3.5e-43 180.6 159 57.2
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-41 173.7 104 79.8
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 9.5e-41 172.6 112 72.3
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-40 172.2 109 75.2
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-38 165.6 112 69.6
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 2.2e-37 161.4 111 68.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 4.9e-37 160.2 112 67.9
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.4e-36 157.9 81 93.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.4e-36 157.9 81 93.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.0e-35 154.8 104 69.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 9.8e-30 136.0 128 57.8
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-28 132.5 128 53.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-27 129.0 100 62.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.6e-27 128.6 82 75.6
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-27 127.1 87 70.1
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-24 119.0 72 79.2
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 1.6e-24 118.6 509 24.6
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-24 116.3 114 53.5
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-21 107.8 68 70.6
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 4.1e-20 104.0 150 42.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-19 100.1 66 71.2
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-18 99.4 55 78.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.2e-16 90.1 83 51.8
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.9e-13 81.3 146 37.7
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 4.9e-13 80.5 55 72.7
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.7e-11 74.7 182 29.1
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 3.5e-11 74.3 182 28.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 4.6e-11 73.9 182 29.1
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-11 73.6 41 75.6
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-09 66.2 40 70.0
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.2e-08 65.9 202 26.2
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.2e-08 65.9 185 27.6
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 2.8e-08 64.7 41 68.3
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.6e-08 64.3 47 61.7
BolC5t30574H Brassica oleracea HOM05D002136 ORTHO05D005956 6.2e-08 63.5 38 76.3
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 6.2e-08 63.5 41 68.3
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.4e-07 62.4 183 23.5


User provided reference genes

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