Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.0e-210 736.5 374 100.0
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 5.8e-190 667.5 374 92.0
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 4.2e-188 661.4 374 90.9
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.1e-187 659.1 374 91.2
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.0e-186 656.8 374 90.4
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 2.4e-183 645.6 372 88.4
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 3.1e-183 645.2 372 88.4
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-182 642.9 372 88.4
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 3.4e-182 641.7 368 89.1
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 3.4e-182 641.7 372 89.0
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 3.8e-181 638.3 372 88.4
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 9.3e-180 633.6 372 87.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.8e-176 622.1 372 86.6
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.9e-172 609.4 368 84.0
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 7.2e-172 607.4 369 84.0
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 2.1e-171 605.9 369 82.9
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 9.1e-167 590.5 374 80.2
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 2.0e-166 589.3 368 84.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.5e-165 583.9 372 80.1
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 3.7e-160 568.5 371 77.9
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 4.2e-132 475.3 360 67.5
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.6e-129 466.1 367 64.9
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.7e-128 463.4 369 64.0
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.2e-128 463.0 368 64.7
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.8e-128 462.6 373 64.3
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.7e-128 462.2 368 63.9
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 6.3e-128 461.5 365 64.4
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 7.0e-127 458.0 369 64.0
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 9.2e-127 457.6 368 64.1
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.6e-126 456.8 373 63.0
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 1.6e-126 456.8 368 62.8
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.0e-126 456.4 372 62.1
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.5e-126 455.7 365 63.6
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 5.9e-126 454.9 373 60.6
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 7.8e-126 454.5 365 62.2
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 8.6e-125 451.1 369 62.1
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 8.6e-125 451.1 350 66.0
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.5e-124 449.5 359 64.6
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.5e-124 449.5 352 65.6
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 7.3e-124 448.0 373 62.7
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 9.5e-124 447.6 366 63.4
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 2.8e-123 446.0 366 61.2
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 8.0e-123 444.5 374 61.2
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.0e-122 444.1 360 61.4
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 3.4e-121 439.1 369 60.4
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.4e-121 438.7 368 62.2
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.4e-121 438.7 368 62.2
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 7.0e-119 431.4 370 59.7
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.2e-118 430.6 368 58.7
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.2e-118 430.6 362 59.7
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.7e-117 426.8 367 60.5
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.6e-117 424.9 368 57.9
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 8.6e-117 424.5 366 59.3
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.6e-117 424.5 368 57.9
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.6e-117 424.5 368 57.9
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.1e-116 424.1 367 59.9
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 1.5e-116 423.7 368 57.6
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.9e-116 423.3 368 57.6
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 2.1e-115 419.9 358 58.4
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.7e-115 418.7 359 58.2
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.1e-114 417.5 360 59.7
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.4e-114 417.2 359 59.9
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.2e-113 414.1 371 57.7
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 5.8e-113 411.8 371 57.7
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.9e-112 409.5 371 57.1
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.9e-111 406.8 370 58.1
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 4.1e-111 405.6 368 57.6
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-110 404.1 365 57.8
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.2e-110 404.1 367 58.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 4.6e-110 402.1 363 56.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.7e-109 400.2 351 58.7
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.7e-109 400.2 368 57.9
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.3e-109 399.8 371 56.3
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.0e-109 399.4 355 58.6
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.9e-109 399.1 371 56.3
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 6.6e-109 398.3 351 59.0
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 8.6e-109 397.9 365 56.4
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 2.5e-108 396.4 376 55.9
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.5e-108 396.4 371 56.3
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.5e-108 396.4 368 57.9
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 2.5e-108 396.4 351 58.1
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 7.3e-108 394.8 359 59.1
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 7.3e-108 394.8 369 57.2
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 9.5e-108 394.4 353 57.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 2.1e-107 393.3 367 55.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.4e-106 390.6 364 56.9
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.8e-106 390.2 374 54.5
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 3.1e-106 389.4 369 56.6
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.6e-105 386.3 365 54.8
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.9e-104 382.9 366 56.0
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 8.3e-104 381.3 369 55.0
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.1e-103 379.0 350 56.6
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 9.2e-103 377.9 370 54.6
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 1.6e-102 377.1 360 55.8
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 2.7e-102 376.3 375 54.4
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 6.0e-102 375.2 374 52.4
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 7.8e-102 374.8 366 53.8
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 7.8e-102 374.8 366 53.8
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.7e-101 373.6 364 54.7
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 5.1e-101 372.1 370 53.8
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 9.5e-100 367.9 367 52.6
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.1e-99 366.7 355 53.5
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.4e-98 363.2 366 51.4
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 3.5e-94 349.4 297 59.6
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.3e-93 346.7 385 50.6
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.3e-92 342.8 351 53.0
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 5.6e-92 342.0 359 51.3
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 9.6e-92 341.3 213 82.6
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.6e-91 340.5 213 82.6
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.5e-89 334.0 351 49.6
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 7.1e-87 325.1 319 54.5
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.4e-82 310.1 285 55.8
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 7.4e-76 288.5 362 46.1
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 9.0e-74 281.6 355 41.1
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.8e-69 267.3 376 40.2
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 3.0e-61 240.0 365 39.5
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 9.7e-60 235.0 122 97.5
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.2e-59 231.9 122 96.7
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 1.6e-54 217.6 223 50.7
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 3.9e-53 213.0 154 70.1
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 4.3e-52 209.5 287 43.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 6.3e-51 205.7 210 48.6
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 6.9e-50 202.2 350 36.9
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 7.7e-49 198.7 163 60.7
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 5.0e-48 196.1 163 62.6
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 7.7e-41 172.2 360 32.5
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 3.6e-38 163.3 97 74.2
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.7e-35 154.5 116 65.5
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 3.7e-35 153.3 173 48.0
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.6e-33 147.1 99 67.7
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 4.5e-33 146.4 103 68.0
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 5.9e-33 146.0 100 70.0
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.7e-32 144.4 101 68.3
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 6.5e-32 142.5 100 68.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.6e-30 137.9 149 45.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.7e-30 136.3 173 50.9
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 6.8e-29 132.5 165 41.2
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 8.3e-27 125.6 327 27.5
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 7.0e-26 122.5 85 68.2
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 7.0e-26 122.5 85 68.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.9e-25 119.4 215 34.9
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 6.5e-24 115.9 213 37.6
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.2e-23 113.6 200 36.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.6e-22 111.3 141 48.2
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 6.8e-21 105.9 136 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.6e-20 104.0 203 36.0
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-18 97.8 48 95.8
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.8e-18 97.8 110 45.5
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 2.8e-14 84.0 122 45.1
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 8.0e-14 82.4 99 48.5
C04p54390 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-12 78.2 56 75.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 8.3e-11 72.4 44 77.3
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.0e-08 65.5 128 39.8
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.1e-07 62.0 46 60.9
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.9e-07 61.2 119 42.0
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 6.1e-06 56.2 138 35.5


User provided reference genes

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