Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1753.8 856 100.0
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1722.2 857 98.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1718.0 858 98.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1706.0 858 97.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1623.6 861 92.5
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1588.2 860 92.3
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1561.2 863 88.6
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1557.7 860 87.9
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1557.3 892 86.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1533.5 893 84.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1454.5 879 81.1
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1361.3 857 77.4
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1249.6 775 76.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1248.8 776 77.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1244.2 781 75.9
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 784 74.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1222.6 785 74.3
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1213.7 782 74.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1206.8 777 74.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1206.4 821 71.4
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1198.7 787 73.2
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 859 66.6
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1190.6 781 73.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1185.2 855 66.0
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1184.1 855 66.2
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 855 66.2
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1180.2 854 67.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1179.5 855 65.7
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1177.9 853 65.9
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 855 66.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1165.6 854 64.8
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 853 64.1
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 853 64.1
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1162.9 853 65.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 859 64.6
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 854 64.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 858 65.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 855 66.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1157.9 858 65.2
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 857 64.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 787 71.3
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 859 64.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 855 64.4
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 858 65.3
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 813 66.3
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1140.6 736 74.0
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1138.6 855 63.7
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 868 63.2
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1137.9 857 63.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 855 64.1
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1133.6 858 63.4
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1126.3 817 65.1
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 857 63.1
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 890 62.1
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1124.0 876 62.6
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 818 66.0
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1122.5 976 58.1
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 854 63.9
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1119.4 885 61.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1116.7 859 61.8
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1114.4 857 62.4
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 855 62.5
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1112.8 857 62.3
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1112.4 856 62.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 855 62.0
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 807 67.7
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 856 62.4
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1108.6 855 62.0
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 830 64.5
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1107.0 855 62.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1107.0 859 61.4
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 856 62.1
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 858 62.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 816 65.2
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 859 61.4
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 856 61.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 860 62.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 854 62.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 860 61.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1094.0 879 61.3
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 860 61.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 860 62.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1085.9 855 60.2
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1085.9 860 61.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 859 60.5
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1077.4 862 61.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 855 60.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 855 60.5
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 864 60.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1075.1 860 60.2
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 5.9e-312 1074.3 860 60.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 5.9e-312 1073.9 859 60.2
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 5.9e-312 1073.9 856 60.7
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.3e-309 1066.2 856 60.2
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 6.4e-309 1063.9 856 59.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 2.5e-305 1052.0 804 62.1
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.0e-302 1042.3 872 59.9
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 5.8e-302 1040.8 855 59.6
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.6e-299 1032.7 855 59.3
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 858 58.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 853 59.1
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.9e-297 1025.8 863 59.8
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.6e-296 1022.7 863 57.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 4.0e-295 1018.1 731 66.2
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.5e-294 1016.1 756 62.3
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 4.6e-291 1004.6 812 58.1
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.5e-289 998.8 780 59.6
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 5.6e-289 997.7 845 58.7
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 9.0e-287 990.3 722 65.4
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 2.6e-286 988.8 770 63.0
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 9.9e-286 986.9 852 56.9
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.9e-284 982.6 884 55.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.2e-284 981.5 776 63.8
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.2e-283 979.9 782 59.2
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.1e-280 969.1 802 57.4
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.0e-277 960.3 860 55.6
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.4e-276 956.4 918 52.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-266 923.3 801 59.1
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.9e-266 921.8 481 90.4
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 5.9e-254 881.3 861 52.5
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.4e-249 864.4 864 50.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 6.1e-243 844.7 802 51.6
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.3e-237 827.0 657 61.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 3.6e-235 818.9 793 54.7
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.2e-227 793.9 855 46.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 3.0e-218 762.7 795 46.7
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.6e-214 748.8 630 58.1
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.5e-212 743.8 605 60.7
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.5e-204 717.2 671 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.1e-195 686.8 739 47.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 4.7e-195 685.6 665 53.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.9e-191 673.7 434 71.0
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.2e-183 646.0 430 67.9
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 4.9e-176 622.5 580 57.1
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 5.1e-173 612.5 592 53.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.2e-166 591.3 427 64.6
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.6e-163 580.9 920 37.9
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.2e-161 574.7 479 58.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.2e-158 564.7 509 53.2
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 5.5e-127 459.5 434 54.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 7.2e-127 459.1 321 65.4
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 9.8e-116 422.2 270 73.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 6.3e-115 419.5 408 52.7
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.4e-114 418.3 783 35.8
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.4e-109 401.7 337 58.2
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 5.4e-106 389.8 907 33.2
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 5.6e-95 353.2 407 47.4
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.4e-90 338.6 441 44.0
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 6.8e-85 319.7 402 46.3
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.0e-84 318.2 243 60.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.9e-83 313.5 543 33.9
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 3.4e-68 264.2 202 61.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 3.7e-54 217.6 206 55.8
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 1.2e-49 202.6 134 68.7
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.0e-48 199.5 167 57.5
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.9e-47 195.3 100 83.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.3e-39 167.9 99 77.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 5.3e-37 160.6 194 45.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 3.8e-27 127.9 81 71.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.9e-26 125.6 87 70.1
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.9e-26 125.6 155 41.9
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.9e-24 117.9 98 66.3
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.6e-23 115.2 97 66.0
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 3.7e-22 111.3 70 74.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 9.1e-21 106.7 123 50.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.5e-18 98.6 95 54.7
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 3.2e-18 98.2 83 55.4
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 8.8e-16 90.1 82 57.3
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.7e-15 87.4 60 66.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.3e-14 84.0 97 48.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-12 79.7 39 87.2
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.6e-12 79.3 45 71.1
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.6e-12 78.6 88 43.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.0e-11 74.3 44 75.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.2e-07 63.2 57 49.1
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.7e-06 58.2 67 44.8


User provided reference genes

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