Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38835H Brassica oleracea HOM05D001239 ORTHO05D000925 5.7e-38 160.6 92 100.0
BcaB04g18173 Brassica carinata HOM05D001239 ORTHO05D000925 1.5e-25 119.4 90 75.6
BraA07t29530Z Brassica rapa HOM05D001239 ORTHO05D000925 2.5e-25 118.6 86 75.6
BraA06t24059Z Brassica rapa HOM05D001239 ORTHO05D000925 2.7e-24 115.2 85 74.1
BcaC08g46847 Brassica carinata HOM05D000496 ORTHO05D000411 6.1e-24 114.0 85 76.5
BcaC06g34152 Brassica carinata HOM05D000496 ORTHO05D000411 4.0e-23 111.3 87 72.4
BcaC03g15116 Brassica carinata HOM05D000496 ORTHO05D000411 2.0e-22 109.0 85 70.6
BolC9t54410H Brassica oleracea HOM05D001239 ORTHO05D000925 9.8e-22 106.7 91 69.2
C06p00890 Brassica napus HOM05D001239 ORTHO05D000925 1.7e-21 105.9 88 69.3
BcaB02g09878 Brassica carinata HOM05D000496 ORTHO05D000411 1.4e-20 102.8 87 64.4
BolC7t42937H Brassica oleracea HOM05D001239 ORTHO05D000925 2.4e-20 102.1 88 64.8
BcaB08g34848 Brassica carinata HOM05D000496 ORTHO05D000411 4.1e-20 101.3 83 69.9
BolC9t58889H Brassica oleracea HOM05D001239 ORTHO05D000925 5.4e-20 100.9 88 64.8
BolC9t56299H Brassica oleracea HOM05D001239 ORTHO05D000925 4.5e-19 97.8 88 63.6
BcaB03g14160 Brassica carinata HOM05D000496 ORTHO05D000411 2.2e-18 95.5 83 62.7
C05p07060 Brassica napus HOM05D038184 ORTHO05D040316 1.5e-17 92.8 67 73.1
BolC5t29461H Brassica oleracea HOM05D038184 ORTHO05D040316 1.5e-17 92.8 67 73.1
BcaC08g45723 Brassica carinata HOM05D001239 ORTHO05D000925 4.4e-14 81.3 92 53.3
BolC4t25971H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-13 79.7 82 53.7
BolC8t51140H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-13 79.7 88 53.4
C06p10980 Brassica napus HOM05D001239 ORTHO05D000925 2.8e-13 78.6 81 55.6
BolC1t05766H Brassica oleracea HOM05D001239 ORTHO05D000925 2.8e-13 78.6 81 53.1
Sp4g05790 Schrenkiella parvula HOM05D001239 ORTHO05D000925 2.8e-13 78.6 80 53.8
BraA02t04989Z Brassica rapa HOM05D000003 ORTHO05D000925 3.7e-13 78.2 80 55.0
A09p69400 Brassica napus HOM05D000489 ORTHO05D000372 6.3e-13 77.4 81 51.9
BolC6t35269H Brassica oleracea HOM05D001239 ORTHO05D000925 6.3e-13 77.4 81 54.3
BolC8t52932H Brassica oleracea HOM05D000489 ORTHO05D012282 6.3e-13 77.4 81 51.9
BNapus_Darmor_BZH_scaffold_229p00140 Brassica napus HOM05D001239 ORTHO05D000925 1.4e-12 76.3 85 50.6
BolC5t29150H Brassica oleracea HOM05D001239 ORTHO05D000925 2.4e-12 75.5 69 63.8
BolC5t33856H Brassica oleracea HOM05D001239 ORTHO05D000925 3.1e-12 75.1 81 51.9
BolC4t23673H Brassica oleracea HOM05D001239 ORTHO05D000925 4.1e-12 74.7 88 45.5
AL3G32130 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 7.0e-12 73.9 82 52.4
BraA04t18944Z Brassica rapa HOM05D008653 ORTHO05D000925 1.2e-11 73.2 88 50.0
BolC9t59423H Brassica oleracea HOM05D001239 ORTHO05D000925 1.6e-11 72.8 72 56.9
BolC9t58220H Brassica oleracea HOM05D008653 ORTHO05D000925 2.0e-11 72.4 86 50.0
BraA08t35548Z Brassica rapa HOM05D001239 ORTHO05D000925 3.5e-11 71.6 85 47.1
BraA08t34484Z Brassica rapa HOM05D008653 ORTHO05D000925 4.5e-11 71.2 88 50.0
BraA09t38022Z Brassica rapa HOM05D001239 ORTHO05D000925 5.9e-11 70.9 88 46.6
BolC9t56169H Brassica oleracea HOM05D001239 ORTHO05D000925 7.8e-11 70.5 80 48.8
AL3G48000 Arabidopsis lyrata HOM05D012944 ORTHO05D014028 1.0e-10 70.1 83 48.2
BolC4t26620H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-10 69.7 80 47.5
BolC6t39317H Brassica oleracea HOM05D001239 ORTHO05D000925 1.7e-10 69.3 85 43.5
BraA07t28401Z Brassica rapa HOM05D001239 ORTHO05D000925 2.3e-10 68.9 88 51.1
BolC1t00761H Brassica oleracea HOM05D008653 ORTHO05D000925 3.8e-10 68.2 85 45.9
BolC6t35664H Brassica oleracea HOM05D008653 ORTHO05D000925 3.8e-10 68.2 85 48.2
A08p33830 Brassica napus HOM05D001239 ORTHO05D000925 5.0e-10 67.8 85 49.4
BolC9t55688H Brassica oleracea HOM05D001239 ORTHO05D000925 5.0e-10 67.8 88 40.9
Thhalv10011157m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 5.0e-10 67.8 82 46.3
BcaC05g28546 Brassica carinata HOM05D000003 ORTHO05D000006 6.6e-10 67.4 88 44.3
BraA08t32778Z Brassica rapa HOM05D001239 ORTHO05D000925 6.6e-10 67.4 79 48.1
AL1G55340 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 8.6e-10 67.0 83 45.8
AL2G28950 Arabidopsis lyrata HOM05D012944 ORTHO05D014028 8.6e-10 67.0 83 45.8
BolC6t35885H Brassica oleracea HOM05D001239 ORTHO05D000925 8.6e-10 67.0 84 42.9
BolC5t34092H Brassica oleracea HOM05D001239 ORTHO05D000925 1.1e-09 66.6 72 51.4
BolC8t50916H Brassica oleracea HOM05D001239 ORTHO05D000925 1.5e-09 66.2 81 42.0
BolC6t35926H Brassica oleracea HOM05D001239 ORTHO05D000925 1.9e-09 65.9 72 51.4
CARHR145720 Cardamine hirsuta HOM05D001239 ORTHO05D000925 3.3e-09 65.1 82 50.0
BraA03t13572Z Brassica rapa HOM05D008653 ORTHO05D000925 5.6e-09 64.3 80 48.8
Thhalv10023927m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 5.6e-09 64.3 86 48.8
BolC5t33152H Brassica oleracea HOM05D001239 ORTHO05D000925 7.3e-09 63.9 83 39.8
A06p41350 Brassica napus HOM05D008478 ORTHO05D000925 1.2e-08 63.2 80 47.5
BraA07t27837Z Brassica rapa HOM05D000003 ORTHO05D000004 1.2e-08 63.2 80 47.5
Sp1g01750 Schrenkiella parvula HOM05D001239 ORTHO05D000925 1.2e-08 63.2 83 44.6
AL7G15770 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 1.6e-08 62.8 82 48.8
BolC2t05983H Brassica oleracea HOM05D001239 ORTHO05D000925 1.6e-08 62.8 70 50.0
Thhalv10023022m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 2.1e-08 62.4 82 46.3
Sp7g01630 Schrenkiella parvula HOM05D001239 ORTHO05D000925 2.1e-08 62.4 83 44.6
BcaNung04285 Brassica carinata HOM05D001239 ORTHO05D000925 2.8e-08 62.0 85 40.0
BcaB07g33890 Brassica carinata HOM05D001239 ORTHO05D000925 3.6e-08 61.6 85 40.0
A04p26810 Brassica napus HOM05D008478 ORTHO05D000925 3.6e-08 61.6 80 47.5
C03p34180 Brassica napus HOM05D001239 ORTHO05D000925 3.6e-08 61.6 73 46.6
BcaC05g27689 Brassica carinata HOM05D001239 ORTHO05D000925 4.7e-08 61.2 87 46.0
C08p07270 Brassica napus HOM05D001239 ORTHO05D000925 4.7e-08 61.2 85 42.4
BolC5t34840H Brassica oleracea HOM05D001239 ORTHO05D000925 4.7e-08 61.2 80 42.5
BolC7t42161H Brassica oleracea HOM05D008653 ORTHO05D000925 4.7e-08 61.2 88 43.2
BolC8t47569H Brassica oleracea HOM05D001239 ORTHO05D000925 4.7e-08 61.2 85 42.4
BcaC04g22514 Brassica carinata HOM05D001239 ORTHO05D027739 8.0e-08 60.5 82 40.2
C03p52090 Brassica napus HOM05D001239 ORTHO05D000925 8.0e-08 60.5 85 45.9
BolC3t17489H Brassica oleracea HOM05D001239 ORTHO05D000925 8.0e-08 60.5 85 45.9
BraA07t28464Z Brassica rapa HOM05D001239 ORTHO05D000925 8.0e-08 60.5 69 46.4
BraA08t32764Z Brassica rapa HOM05D012699 ORTHO05D000925 8.0e-08 60.5 81 42.0
BolC2t08778H Brassica oleracea HOM05D001239 ORTHO05D000925 1.4e-07 59.7 63 47.6
BolC3t14565H Brassica oleracea HOM05D001239 ORTHO05D000925 1.4e-07 59.7 85 41.2
BolC6t36504H Brassica oleracea HOM05D001239 ORTHO05D000925 1.4e-07 59.7 67 47.8
BolC8t52815H Brassica oleracea HOM05D001239 ORTHO05D000925 1.8e-07 59.3 80 45.0
BraA08t32647Z Brassica rapa HOM05D001239 ORTHO05D000925 2.3e-07 58.9 83 44.6
AL251U10020 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 4.0e-07 58.2 82 46.3
BcaC01g01483 Brassica carinata HOM05D001239 ORTHO05D000925 4.0e-07 58.2 82 41.5
BraA04t18055Z Brassica rapa HOM05D008653 ORTHO05D000925 4.0e-07 58.2 69 47.8
BraA09t37618Z Brassica rapa HOM05D001239 ORTHO05D000925 4.0e-07 58.2 82 37.8
Thhalv10019721m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 4.0e-07 58.2 80 46.2
BcaB03g13732 Brassica carinata HOM05D012699 ORTHO05D016706 5.2e-07 57.8 80 42.5
C06p10370 Brassica napus HOM05D001239 ORTHO05D000925 5.2e-07 57.8 89 44.9
BolC8t51260H Brassica oleracea HOM05D001239 ORTHO05D000925 5.2e-07 57.8 80 43.8
BolC9t58964H Brassica oleracea HOM05D008478 ORTHO05D000925 5.2e-07 57.8 83 45.8
BcaB06g28514 Brassica carinata HOM05D001239 ORTHO05D000925 6.8e-07 57.4 83 45.8
BraA02t06559Z Brassica rapa HOM05D001239 ORTHO05D000925 6.8e-07 57.4 87 40.2
BraA04t17503Z Brassica rapa HOM05D001239 ORTHO05D000925 6.8e-07 57.4 80 43.8
BraA06t26944Z Brassica rapa HOM05D008653 ORTHO05D000925 6.8e-07 57.4 88 39.8
BraA01t00376Z Brassica rapa HOM05D001239 ORTHO05D000925 8.9e-07 57.0 80 46.2
BcaB01g00822 Brassica carinata HOM05D008478 ORTHO05D000925 1.5e-06 56.2 83 45.8
BcaC01g02035 Brassica carinata HOM05D001239 ORTHO05D000925 1.5e-06 56.2 83 42.2
BcaC02g09573 Brassica carinata HOM05D001239 ORTHO05D000925 1.5e-06 56.2 83 44.6
BcaC09g51021 Brassica carinata HOM05D000022 ORTHO05D000071 1.5e-06 56.2 80 48.8
A08p31940 Brassica napus HOM05D008653 ORTHO05D000925 1.5e-06 56.2 69 49.3
BolC4t26004H Brassica oleracea HOM05D008478 ORTHO05D000925 1.5e-06 56.2 83 44.6
BcaB04g18040 Brassica carinata HOM05D001239 ORTHO05D000925 2.6e-06 55.5 83 44.6
BolC2t12256H Brassica oleracea HOM05D012699 ORTHO05D000925 2.6e-06 55.5 85 37.6
CARHR034640 Cardamine hirsuta HOM05D001239 ORTHO05D000925 2.6e-06 55.5 80 46.2
BcaB03g15427 Brassica carinata HOM05D001239 ORTHO05D000925 3.4e-06 55.1 83 47.0
BraA02t06627Z Brassica rapa HOM05D008478 ORTHO05D000925 3.4e-06 55.1 83 43.4
Thhalv10003494m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 3.4e-06 55.1 80 45.0
BcaC03g15329 Brassica carinata HOM05D001239 ORTHO05D000925 4.4e-06 54.7 83 44.6
BolC2t08551H Brassica oleracea HOM05D001239 ORTHO05D000925 4.4e-06 54.7 80 41.2
BolC4t27637H Brassica oleracea HOM05D000003 ORTHO05D000925 4.4e-06 54.7 80 47.5
BolC6t35224H Brassica oleracea HOM05D001239 ORTHO05D024050 4.4e-06 54.7 38 81.6
BolC9t58145H Brassica oleracea HOM05D001239 ORTHO05D000925 4.4e-06 54.7 80 45.0
BcaB02g10316 Brassica carinata HOM05D001239 ORTHO05D000925 5.7e-06 54.3 83 45.8
BcaC06g34500 Brassica carinata HOM05D000003 ORTHO05D000925 5.7e-06 54.3 79 44.3
BraA07t28030Z Brassica rapa HOM05D008478 ORTHO05D000925 5.7e-06 54.3 85 44.7
Thhalv10001854m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 5.7e-06 54.3 87 40.2
AL9U10020 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 7.5e-06 53.9 83 38.6
Thhalv10028075m.g Eutrema salsugineum HOM05D000003 ORTHO05D000925 7.5e-06 53.9 77 42.9
CARHR217600 Cardamine hirsuta HOM05D001239 ORTHO05D000925 9.8e-06 53.5 80 41.2
Thhalv10017605m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 9.8e-06 53.5 88 39.8


User provided reference genes

Program Settings