Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 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'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001239', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001239' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 'bol', 'BolC6t35354H' => 'bol', 'BolC6t35370H' => 'bol', 'BolC6t35388H' => 'bol', 'BolC6t35566H' => 'bol', 'BolC6t35885H' => 'bol', 'BolC6t35926H' => 'bol', 'BolC6t36113H' => 'bol', 'BolC6t36504H' => 'bol', 'BolC6t36543H' => 'bol', 'BolC6t37073H' => 'bol', 'BolC6t38044H' => 'bol', 'BolC6t38608H' => 'bol', 'BolC6t38739H' => 'bol', 'BolC6t38835H' => 'bol', 'BolC6t38967H' => 'bol', 'BolC6t39252H' => 'bol', 'BolC6t39317H' => 'bol', 'BolC6t39318H' => 'bol', 'BolC6t39320H' => 'bol', 'BolC7t40586H' => 'bol', 'BolC7t40707H' => 'bol', 'BolC7t40747H' => 'bol', 'BolC7t41416H' => 'bol', 'BolC7t42027H' => 'bol', 'BolC7t42556H' => 'bol', 'BolC7t42937H' => 'bol', 'BolC7t43208H' => 'bol', 'BolC7t43489H' => 'bol', 'BolC7t44271H' => 'bol', 'BolC7t44282H' => 'bol', 'BolC7t44476H' => 'bol', 'BolC7t44839H' => 'bol', 'BolC7t45220H' => 'bol', 'BolC7t45796H' => 'bol', 'BolC7t46240H' => 'bol', 'BolC8t47511H' => 'bol', 'BolC8t47551H' => 'bol', 'BolC8t47569H' => 'bol', 'BolC8t48117H' => 'bol', 'BolC8t48552H' => 'bol', 'BolC8t48797H' => 'bol', 'BolC8t49091H' => 'bol', 'BolC8t49338H' => 'bol', 'BolC8t49423H' => 'bol', 'BolC8t49469H' => 'bol', 'BolC8t49666H' => 'bol', 'BolC8t49699H' => 'bol', 'BolC8t49935H' => 'bol', 'BolC8t49936H' => 'bol', 'BolC8t50916H' => 'bol', 'BolC8t51140H' => 'bol', 'BolC8t51239H' => 'bol', 'BolC8t51260H' => 'bol', 'BolC8t51300H' => 'bol', 'BolC8t52815H' => 'bol', 'BolC9t53309H' => 'bol', 'BolC9t53787H' => 'bol', 'BolC9t54035H' => 'bol', 'BolC9t54410H' => 'bol', 'BolC9t54624H' => 'bol', 'BolC9t54713H' => 'bol', 'BolC9t54914H' => 'bol', 'BolC9t55688H' => 'bol', 'BolC9t55949H' => 'bol', 'BolC9t56169H' => 'bol', 'BolC9t56299H' => 'bol', 'BolC9t56437H' => 'bol', 'BolC9t57618H' => 'bol', 'BolC9t58145H' => 'bol', 'BolC9t58282H' => 'bol', 'BolC9t58876H' => 'bol', 'BolC9t58889H' => 'bol', 'BolC9t59423H' => 'bol', 'BolC9t60145H' => 'bol', 'BraA01t00118Z' => 'bra', 'BraA01t00376Z' => 'bra', 'BraA01t00620Z' => 'bra', 'BraA01t00649Z' => 'bra', 'BraA01t01839Z' => 'bra', 'BraA01t01996Z' => 'bra', 'BraA01t02071Z' => 'bra', 'BraA01t03685Z' => 'bra', 'BraA01t04425Z' => 'bra', 'BraA01t04462Z' => 'bra', 'BraA02t05683Z' => 'bra', 'BraA02t06066Z' => 'bra', 'BraA02t06467Z' => 'bra', 'BraA02t06515Z' => 'bra', 'BraA02t06522Z' => 'bra', 'BraA02t06559Z' => 'bra', 'BraA02t08308Z' => 'bra', 'BraA02t08675Z' => 'bra', 'BraA03t11474Z' => 'bra', 'BraA03t12191Z' => 'bra', 'BraA03t12511Z' => 'bra', 'BraA03t13198Z' => 'bra', 'BraA03t13628Z' => 'bra', 'BraA03t15028Z' => 'bra', 'BraA03t15429Z' => 'bra', 'BraA03t15438Z' => 'bra', 'BraA03t15603Z' => 'bra', 'BraA04t15761Z' => 'bra', 'BraA04t15992Z' => 'bra', 'BraA04t16685Z' => 'bra', 'BraA04t17503Z' => 'bra', 'BraA04t17766Z' => 'bra', 'BraA04t18603Z' => 'bra', 'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001239' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001239' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001239' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 'bol', 'BolC6t35354H' => 'bol', 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'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001239', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001239' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 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'bol', 'BolC8t48797H' => 'bol', 'BolC8t49091H' => 'bol', 'BolC8t49338H' => 'bol', 'BolC8t49423H' => 'bol', 'BolC8t49469H' => 'bol', 'BolC8t49666H' => 'bol', 'BolC8t49699H' => 'bol', 'BolC8t49935H' => 'bol', 'BolC8t49936H' => 'bol', 'BolC8t50916H' => 'bol', 'BolC8t51140H' => 'bol', 'BolC8t51239H' => 'bol', 'BolC8t51260H' => 'bol', 'BolC8t51300H' => 'bol', 'BolC8t52815H' => 'bol', 'BolC9t53309H' => 'bol', 'BolC9t53787H' => 'bol', 'BolC9t54035H' => 'bol', 'BolC9t54410H' => 'bol', 'BolC9t54624H' => 'bol', 'BolC9t54713H' => 'bol', 'BolC9t54914H' => 'bol', 'BolC9t55688H' => 'bol', 'BolC9t55949H' => 'bol', 'BolC9t56169H' => 'bol', 'BolC9t56299H' => 'bol', 'BolC9t56437H' => 'bol', 'BolC9t57618H' => 'bol', 'BolC9t58145H' => 'bol', 'BolC9t58282H' => 'bol', 'BolC9t58876H' => 'bol', 'BolC9t58889H' => 'bol', 'BolC9t59423H' => 'bol', 'BolC9t60145H' => 'bol', 'BraA01t00118Z' => 'bra', 'BraA01t00376Z' => 'bra', 'BraA01t00620Z' => 'bra', 'BraA01t00649Z' => 'bra', 'BraA01t01839Z' => 'bra', 'BraA01t01996Z' => 'bra', 'BraA01t02071Z' => 'bra', 'BraA01t03685Z' => 'bra', 'BraA01t04425Z' => 'bra', 'BraA01t04462Z' => 'bra', 'BraA02t05683Z' => 'bra', 'BraA02t06066Z' => 'bra', 'BraA02t06467Z' => 'bra', 'BraA02t06515Z' => 'bra', 'BraA02t06522Z' => 'bra', 'BraA02t06559Z' => 'bra', 'BraA02t08308Z' => 'bra', 'BraA02t08675Z' => 'bra', 'BraA03t11474Z' => 'bra', 'BraA03t12191Z' => 'bra', 'BraA03t12511Z' => 'bra', 'BraA03t13198Z' => 'bra', 'BraA03t13628Z' => 'bra', 'BraA03t15028Z' => 'bra', 'BraA03t15429Z' => 'bra', 'BraA03t15438Z' => 'bra', 'BraA03t15603Z' => 'bra', 'BraA04t15761Z' => 'bra', 'BraA04t15992Z' => 'bra', 'BraA04t16685Z' => 'bra', 'BraA04t17503Z' => 'bra', 'BraA04t17766Z' => 'bra', 'BraA04t18603Z' => 'bra', 'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001239' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001239' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001239' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 'bol', 'BolC6t35354H' => 'bol', 'BolC6t35370H' => 'bol', 'BolC6t35388H' => 'bol', 'BolC6t35566H' => 'bol', 'BolC6t35885H' => 'bol', 'BolC6t35926H' => 'bol', 'BolC6t36113H' => 'bol', 'BolC6t36504H' => 'bol', 'BolC6t36543H' => 'bol', 'BolC6t37073H' => 'bol', 'BolC6t38044H' => 'bol', 'BolC6t38608H' => 'bol', 'BolC6t38739H' => 'bol', 'BolC6t38835H' => 'bol', 'BolC6t38967H' => 'bol', 'BolC6t39252H' => 'bol', 'BolC6t39317H' => 'bol', 'BolC6t39318H' => 'bol', 'BolC6t39320H' => 'bol', 'BolC7t40586H' => 'bol', 'BolC7t40707H' => 'bol', 'BolC7t40747H' => 'bol', 'BolC7t41416H' => 'bol', 'BolC7t42027H' => 'bol', 'BolC7t42556H' => 'bol', 'BolC7t42937H' => 'bol', 'BolC7t43208H' => 'bol', 'BolC7t43489H' => 'bol', 'BolC7t44271H' => 'bol', 'BolC7t44282H' => 'bol', 'BolC7t44476H' => 'bol', 'BolC7t44839H' => 'bol', 'BolC7t45220H' => 'bol', 'BolC7t45796H' => 'bol', 'BolC7t46240H' => 'bol', 'BolC8t47511H' => 'bol', 'BolC8t47551H' => 'bol', 'BolC8t47569H' => 'bol', 'BolC8t48117H' => 'bol', 'BolC8t48552H' => 'bol', 'BolC8t48797H' => 'bol', 'BolC8t49091H' => 'bol', 'BolC8t49338H' => 'bol', 'BolC8t49423H' => 'bol', 'BolC8t49469H' => 'bol', 'BolC8t49666H' => 'bol', 'BolC8t49699H' => 'bol', 'BolC8t49935H' => 'bol', 'BolC8t49936H' => 'bol', 'BolC8t50916H' => 'bol', 'BolC8t51140H' => 'bol', 'BolC8t51239H' => 'bol', 'BolC8t51260H' => 'bol', 'BolC8t51300H' => 'bol', 'BolC8t52815H' => 'bol', 'BolC9t53309H' => 'bol', 'BolC9t53787H' => 'bol', 'BolC9t54035H' => 'bol', 'BolC9t54410H' => 'bol', 'BolC9t54624H' => 'bol', 'BolC9t54713H' => 'bol', 'BolC9t54914H' => 'bol', 'BolC9t55688H' => 'bol', 'BolC9t55949H' => 'bol', 'BolC9t56169H' => 'bol', 'BolC9t56299H' => 'bol', 'BolC9t56437H' => 'bol', 'BolC9t57618H' => 'bol', 'BolC9t58145H' => 'bol', 'BolC9t58282H' => 'bol', 'BolC9t58876H' => 'bol', 'BolC9t58889H' => 'bol', 'BolC9t59423H' => 'bol', 'BolC9t60145H' => 'bol', 'BraA01t00118Z' => 'bra', 'BraA01t00376Z' => 'bra', 'BraA01t00620Z' => 'bra', 'BraA01t00649Z' => 'bra', 'BraA01t01839Z' => 'bra', 'BraA01t01996Z' => 'bra', 'BraA01t02071Z' => 'bra', 'BraA01t03685Z' => 'bra', 'BraA01t04425Z' => 'bra', 'BraA01t04462Z' => 'bra', 'BraA02t05683Z' => 'bra', 'BraA02t06066Z' => 'bra', 'BraA02t06467Z' => 'bra', 'BraA02t06515Z' => 'bra', 'BraA02t06522Z' => 'bra', 'BraA02t06559Z' => 'bra', 'BraA02t08308Z' => 'bra', 'BraA02t08675Z' => 'bra', 'BraA03t11474Z' => 'bra', 'BraA03t12191Z' => 'bra', 'BraA03t12511Z' => 'bra', 'BraA03t13198Z' => 'bra', 'BraA03t13628Z' => 'bra', 'BraA03t15028Z' => 'bra', 'BraA03t15429Z' => 'bra', 'BraA03t15438Z' => 'bra', 'BraA03t15603Z' => 'bra', 'BraA04t15761Z' => 'bra', 'BraA04t15992Z' => 'bra', 'BraA04t16685Z' => 'bra', 'BraA04t17503Z' => 'bra', 'BraA04t17766Z' => 'bra', 'BraA04t18603Z' => 'bra', 'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001239', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001239' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 'bol', 'BolC6t35354H' => 'bol', 'BolC6t35370H' => 'bol', 'BolC6t35388H' => 'bol', 'BolC6t35566H' => 'bol', 'BolC6t35885H' => 'bol', 'BolC6t35926H' => 'bol', 'BolC6t36113H' => 'bol', 'BolC6t36504H' => 'bol', 'BolC6t36543H' => 'bol', 'BolC6t37073H' => 'bol', 'BolC6t38044H' => 'bol', 'BolC6t38608H' => 'bol', 'BolC6t38739H' => 'bol', 'BolC6t38835H' => 'bol', 'BolC6t38967H' => 'bol', 'BolC6t39252H' => 'bol', 'BolC6t39317H' => 'bol', 'BolC6t39318H' => 'bol', 'BolC6t39320H' => 'bol', 'BolC7t40586H' => 'bol', 'BolC7t40707H' => 'bol', 'BolC7t40747H' => 'bol', 'BolC7t41416H' => 'bol', 'BolC7t42027H' => 'bol', 'BolC7t42556H' => 'bol', 'BolC7t42937H' => 'bol', 'BolC7t43208H' => 'bol', 'BolC7t43489H' => 'bol', 'BolC7t44271H' => 'bol', 'BolC7t44282H' => 'bol', 'BolC7t44476H' => 'bol', 'BolC7t44839H' => 'bol', 'BolC7t45220H' => 'bol', 'BolC7t45796H' => 'bol', 'BolC7t46240H' => 'bol', 'BolC8t47511H' => 'bol', 'BolC8t47551H' => 'bol', 'BolC8t47569H' => 'bol', 'BolC8t48117H' => 'bol', 'BolC8t48552H' => 'bol', 'BolC8t48797H' => 'bol', 'BolC8t49091H' => 'bol', 'BolC8t49338H' => 'bol', 'BolC8t49423H' => 'bol', 'BolC8t49469H' => 'bol', 'BolC8t49666H' => 'bol', 'BolC8t49699H' => 'bol', 'BolC8t49935H' => 'bol', 'BolC8t49936H' => 'bol', 'BolC8t50916H' => 'bol', 'BolC8t51140H' => 'bol', 'BolC8t51239H' => 'bol', 'BolC8t51260H' => 'bol', 'BolC8t51300H' => 'bol', 'BolC8t52815H' => 'bol', 'BolC9t53309H' => 'bol', 'BolC9t53787H' => 'bol', 'BolC9t54035H' => 'bol', 'BolC9t54410H' => 'bol', 'BolC9t54624H' => 'bol', 'BolC9t54713H' => 'bol', 'BolC9t54914H' => 'bol', 'BolC9t55688H' => 'bol', 'BolC9t55949H' => 'bol', 'BolC9t56169H' => 'bol', 'BolC9t56299H' => 'bol', 'BolC9t56437H' => 'bol', 'BolC9t57618H' => 'bol', 'BolC9t58145H' => 'bol', 'BolC9t58282H' => 'bol', 'BolC9t58876H' => 'bol', 'BolC9t58889H' => 'bol', 'BolC9t59423H' => 'bol', 'BolC9t60145H' => 'bol', 'BraA01t00118Z' => 'bra', 'BraA01t00376Z' => 'bra', 'BraA01t00620Z' => 'bra', 'BraA01t00649Z' => 'bra', 'BraA01t01839Z' => 'bra', 'BraA01t01996Z' => 'bra', 'BraA01t02071Z' => 'bra', 'BraA01t03685Z' => 'bra', 'BraA01t04425Z' => 'bra', 'BraA01t04462Z' => 'bra', 'BraA02t05683Z' => 'bra', 'BraA02t06066Z' => 'bra', 'BraA02t06467Z' => 'bra', 'BraA02t06515Z' => 'bra', 'BraA02t06522Z' => 'bra', 'BraA02t06559Z' => 'bra', 'BraA02t08308Z' => 'bra', 'BraA02t08675Z' => 'bra', 'BraA03t11474Z' => 'bra', 'BraA03t12191Z' => 'bra', 'BraA03t12511Z' => 'bra', 'BraA03t13198Z' => 'bra', 'BraA03t13628Z' => 'bra', 'BraA03t15028Z' => 'bra', 'BraA03t15429Z' => 'bra', 'BraA03t15438Z' => 'bra', 'BraA03t15603Z' => 'bra', 'BraA04t15761Z' => 'bra', 'BraA04t15992Z' => 'bra', 'BraA04t16685Z' => 'bra', 'BraA04t17503Z' => 'bra', 'BraA04t17766Z' => 'bra', 'BraA04t18603Z' => 'bra', 'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001239' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001239' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001239' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 'bol', 'BolC6t35354H' => 'bol', 'BolC6t35370H' => 'bol', 'BolC6t35388H' => 'bol', 'BolC6t35566H' => 'bol', 'BolC6t35885H' => 'bol', 'BolC6t35926H' => 'bol', 'BolC6t36113H' => 'bol', 'BolC6t36504H' => 'bol', 'BolC6t36543H' => 'bol', 'BolC6t37073H' => 'bol', 'BolC6t38044H' => 'bol', 'BolC6t38608H' => 'bol', 'BolC6t38739H' => 'bol', 'BolC6t38835H' => 'bol', 'BolC6t38967H' => 'bol', 'BolC6t39252H' => 'bol', 'BolC6t39317H' => 'bol', 'BolC6t39318H' => 'bol', 'BolC6t39320H' => 'bol', 'BolC7t40586H' => 'bol', 'BolC7t40707H' => 'bol', 'BolC7t40747H' => 'bol', 'BolC7t41416H' => 'bol', 'BolC7t42027H' => 'bol', 'BolC7t42556H' => 'bol', 'BolC7t42937H' => 'bol', 'BolC7t43208H' => 'bol', 'BolC7t43489H' => 'bol', 'BolC7t44271H' => 'bol', 'BolC7t44282H' => 'bol', 'BolC7t44476H' => 'bol', 'BolC7t44839H' => 'bol', 'BolC7t45220H' => 'bol', 'BolC7t45796H' => 'bol', 'BolC7t46240H' => 'bol', 'BolC8t47511H' => 'bol', 'BolC8t47551H' => 'bol', 'BolC8t47569H' => 'bol', 'BolC8t48117H' => 'bol', 'BolC8t48552H' => 'bol', 'BolC8t48797H' => 'bol', 'BolC8t49091H' => 'bol', 'BolC8t49338H' => 'bol', 'BolC8t49423H' => 'bol', 'BolC8t49469H' => 'bol', 'BolC8t49666H' => 'bol', 'BolC8t49699H' => 'bol', 'BolC8t49935H' => 'bol', 'BolC8t49936H' => 'bol', 'BolC8t50916H' => 'bol', 'BolC8t51140H' => 'bol', 'BolC8t51239H' => 'bol', 'BolC8t51260H' => 'bol', 'BolC8t51300H' => 'bol', 'BolC8t52815H' => 'bol', 'BolC9t53309H' => 'bol', 'BolC9t53787H' => 'bol', 'BolC9t54035H' => 'bol', 'BolC9t54410H' => 'bol', 'BolC9t54624H' => 'bol', 'BolC9t54713H' => 'bol', 'BolC9t54914H' => 'bol', 'BolC9t55688H' => 'bol', 'BolC9t55949H' => 'bol', 'BolC9t56169H' => 'bol', 'BolC9t56299H' => 'bol', 'BolC9t56437H' => 'bol', 'BolC9t57618H' => 'bol', 'BolC9t58145H' => 'bol', 'BolC9t58282H' => 'bol', 'BolC9t58876H' => 'bol', 'BolC9t58889H' => 'bol', 'BolC9t59423H' => 'bol', 'BolC9t60145H' => 'bol', 'BraA01t00118Z' => 'bra', 'BraA01t00376Z' => 'bra', 'BraA01t00620Z' => 'bra', 'BraA01t00649Z' => 'bra', 'BraA01t01839Z' => 'bra', 'BraA01t01996Z' => 'bra', 'BraA01t02071Z' => 'bra', 'BraA01t03685Z' => 'bra', 'BraA01t04425Z' => 'bra', 'BraA01t04462Z' => 'bra', 'BraA02t05683Z' => 'bra', 'BraA02t06066Z' => 'bra', 'BraA02t06467Z' => 'bra', 'BraA02t06515Z' => 'bra', 'BraA02t06522Z' => 'bra', 'BraA02t06559Z' => 'bra', 'BraA02t08308Z' => 'bra', 'BraA02t08675Z' => 'bra', 'BraA03t11474Z' => 'bra', 'BraA03t12191Z' => 'bra', 'BraA03t12511Z' => 'bra', 'BraA03t13198Z' => 'bra', 'BraA03t13628Z' => 'bra', 'BraA03t15028Z' => 'bra', 'BraA03t15429Z' => 'bra', 'BraA03t15438Z' => 'bra', 'BraA03t15603Z' => 'bra', 'BraA04t15761Z' => 'bra', 'BraA04t15992Z' => 'bra', 'BraA04t16685Z' => 'bra', 'BraA04t17503Z' => 'bra', 'BraA04t17766Z' => 'bra', 'BraA04t18603Z' => 'bra', 'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001239', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001239' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001239', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '503', 'num_species' => '9' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' ) ), 'genes' => array( 'A03p50030' => 'bna', 'A03p59740' => 'bna', 'A03p63670' => 'bna', 'A04p30600' => 'bna', 'A06p31790' => 'bna', 'A07p13230' => 'bna', 'A07p36190' => 'bna', 'A08p02410' => 'bna', 'A08p33830' => 'bna', 'A09p48850' => 'bna', 'A10p08920' => 'bna', 'A10p23190' => 'bna', 'AL1G55340' => 'aly', 'AL1G62100' => 'aly', 'AL5G14390' => 'aly', 'AL5G21470' => 'aly', 'AL8G23160' => 'aly', 'AL9U10020' => 'aly', 'AT1G10000' => 'ath', 'AT4G09490' => 'ath', 'BcaB01g02090' => 'bca', 'BcaB01g02457' => 'bca', 'BcaB01g03708' => 'bca', 'BcaB01g03722' => 'bca', 'BcaB01g03913' => 'bca', 'BcaB02g08126' => 'bca', 'BcaB02g10316' => 'bca', 'BcaB02g10809' => 'bca', 'BcaB03g11924' => 'bca', 'BcaB03g12925' => 'bca', 'BcaB03g15427' => 'bca', 'BcaB04g17764' => 'bca', 'BcaB04g18040' => 'bca', 'BcaB04g18066' => 'bca', 'BcaB04g18102' => 'bca', 'BcaB04g18103' => 'bca', 'BcaB04g18104' => 'bca', 'BcaB04g18173' => 'bca', 'BcaB04g18676' => 'bca', 'BcaB04g19606' => 'bca', 'BcaB04g19833' => 'bca', 'BcaB05g23185' => 'bca', 'BcaB05g23249' => 'bca', 'BcaB06g26119' => 'bca', 'BcaB06g26311' => 'bca', 'BcaB06g27043' => 'bca', 'BcaB06g27275' => 'bca', 'BcaB06g27756' => 'bca', 'BcaB06g28514' => 'bca', 'BcaB06g29335' => 'bca', 'BcaB07g30263' => 'bca', 'BcaB07g32430' => 'bca', 'BcaB07g32462' => 'bca', 'BcaB07g33299' => 'bca', 'BcaB07g33550' => 'bca', 'BcaB07g33890' => 'bca', 'BcaB08g34270' => 'bca', 'BcaB08g34271' => 'bca', 'BcaB08g34767' => 'bca', 'BcaB08g35537' => 'bca', 'BcaB08g35549' => 'bca', 'BcaB08g35967' => 'bca', 'BcaC01g00118' => 'bca', 'BcaC01g00166' => 'bca', 'BcaC01g01083' => 'bca', 'BcaC01g01193' => 'bca', 'BcaC01g01427' => 'bca', 'BcaC01g01480' => 'bca', 'BcaC01g01483' => 'bca', 'BcaC01g02035' => 'bca', 'BcaC01g02173' => 'bca', 'BcaC01g02457' => 'bca', 'BcaC01g03544' => 'bca', 'BcaC01g03824' => 'bca', 'BcaC01g03871' => 'bca', 'BcaC01g04568' => 'bca', 'BcaC01g05559' => 'bca', 'BcaC01g05560' => 'bca', 'BcaC01g06146' => 'bca', 'BcaC01g06339' => 'bca', 'BcaC02g06989' => 'bca', 'BcaC02g09195' => 'bca', 'BcaC02g09573' => 'bca', 'BcaC02g10137' => 'bca', 'BcaC02g10519' => 'bca', 'BcaC02g11002' => 'bca', 'BcaC02g12033' => 'bca', 'BcaC03g13424' => 'bca', 'BcaC03g13498' => 'bca', 'BcaC03g14187' => 'bca', 'BcaC03g14216' => 'bca', 'BcaC03g15329' => 'bca', 'BcaC03g15550' => 'bca', 'BcaC03g15774' => 'bca', 'BcaC03g17081' => 'bca', 'BcaC03g17316' => 'bca', 'BcaC03g17500' => 'bca', 'BcaC03g17630' => 'bca', 'BcaC04g18748' => 'bca', 'BcaC04g19170' => 'bca', 'BcaC04g20670' => 'bca', 'BcaC04g21158' => 'bca', 'BcaC04g22514' => 'bca', 'BcaC04g22623' => 'bca', 'BcaC05g27311' => 'bca', 'BcaC05g27689' => 'bca', 'BcaC05g27714' => 'bca', 'BcaC05g27994' => 'bca', 'BcaC05g28115' => 'bca', 'BcaC05g29510' => 'bca', 'BcaC05g30114' => 'bca', 'BcaC06g32341' => 'bca', 'BcaC06g33058' => 'bca', 'BcaC06g34537' => 'bca', 'BcaC06g34665' => 'bca', 'BcaC06g34669' => 'bca', 'BcaC07g36999' => 'bca', 'BcaC07g38746' => 'bca', 'BcaC07g38780' => 'bca', 'BcaC07g39054' => 'bca', 'BcaC07g39635' => 'bca', 'BcaC07g39944' => 'bca', 'BcaC07g39980' => 'bca', 'BcaC07g40325' => 'bca', 'BcaC07g40448' => 'bca', 'BcaC07g42703' => 'bca', 'BcaC08g43073' => 'bca', 'BcaC08g43399' => 'bca', 'BcaC08g44422' => 'bca', 'BcaC08g45560' => 'bca', 'BcaC08g45723' => 'bca', 'BcaC08g46106' => 'bca', 'BcaC08g46180' => 'bca', 'BcaC08g46270' => 'bca', 'BcaC08g47031' => 'bca', 'BcaC09g49678' => 'bca', 'BcaC09g50004' => 'bca', 'BcaC09g51831' => 'bca', 'BcaNung00296' => 'bca', 'BcaNung01302' => 'bca', 'BcaNung02086' => 'bca', 'BcaNung02294' => 'bca', 'BcaNung02487' => 'bca', 'BcaNung03545' => 'bca', 'BcaNung04285' => 'bca', 'BcaNung06171' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00140' => 'bna', 'BolC1t00784H' => 'bol', 'BolC1t00785H' => 'bol', 'BolC1t00846H' => 'bol', 'BolC1t00889H' => 'bol', 'BolC1t01433H' => 'bol', 'BolC1t02956H' => 'bol', 'BolC1t03373H' => 'bol', 'BolC1t03931H' => 'bol', 'BolC1t04461H' => 'bol', 'BolC1t04688H' => 'bol', 'BolC1t04689H' => 'bol', 'BolC1t04990H' => 'bol', 'BolC1t05481H' => 'bol', 'BolC1t05766H' => 'bol', 'BolC1t05776H' => 'bol', 'BolC2t05961H' => 'bol', 'BolC2t05983H' => 'bol', 'BolC2t06613H' => 'bol', 'BolC2t06689H' => 'bol', 'BolC2t06873H' => 'bol', 'BolC2t06929H' => 'bol', 'BolC2t07530H' => 'bol', 'BolC2t07700H' => 'bol', 'BolC2t07764H' => 'bol', 'BolC2t07957H' => 'bol', 'BolC2t08478H' => 'bol', 'BolC2t08551H' => 'bol', 'BolC2t08778H' => 'bol', 'BolC2t09268H' => 'bol', 'BolC2t10713H' => 'bol', 'BolC2t10715H' => 'bol', 'BolC2t11040H' => 'bol', 'BolC2t11079H' => 'bol', 'BolC2t11658H' => 'bol', 'BolC2t12215H' => 'bol', 'BolC2t12337H' => 'bol', 'BolC2t12499H' => 'bol', 'BolC3t12762H' => 'bol', 'BolC3t13813H' => 'bol', 'BolC3t14085H' => 'bol', 'BolC3t14565H' => 'bol', 'BolC3t14593H' => 'bol', 'BolC3t15189H' => 'bol', 'BolC3t15317H' => 'bol', 'BolC3t15491H' => 'bol', 'BolC3t17103H' => 'bol', 'BolC3t17489H' => 'bol', 'BolC3t17870H' => 'bol', 'BolC3t18738H' => 'bol', 'BolC3t18954H' => 'bol', 'BolC3t19015H' => 'bol', 'BolC3t19016H' => 'bol', 'BolC3t19592H' => 'bol', 'BolC3t19763H' => 'bol', 'BolC3t19864H' => 'bol', 'BolC3t19983H' => 'bol', 'BolC3t20188H' => 'bol', 'BolC3t20293H' => 'bol', 'BolC3t20678H' => 'bol', 'BolC3t20759H' => 'bol', 'BolC3t20811H' => 'bol', 'BolC3t21199H' => 'bol', 'BolC3t21245H' => 'bol', 'BolC3t21275H' => 'bol', 'BolC4t21781H' => 'bol', 'BolC4t21932H' => 'bol', 'BolC4t21938H' => 'bol', 'BolC4t22146H' => 'bol', 'BolC4t22630H' => 'bol', 'BolC4t22853H' => 'bol', 'BolC4t23405H' => 'bol', 'BolC4t23673H' => 'bol', 'BolC4t24509H' => 'bol', 'BolC4t25169H' => 'bol', 'BolC4t25971H' => 'bol', 'BolC4t26600H' => 'bol', 'BolC4t26620H' => 'bol', 'BolC4t26714H' => 'bol', 'BolC4t26715H' => 'bol', 'BolC4t26780H' => 'bol', 'BolC4t26908H' => 'bol', 'BolC4t27264H' => 'bol', 'BolC4t27439H' => 'bol', 'BolC4t27530H' => 'bol', 'BolC4t27615H' => 'bol', 'BolC5t29135H' => 'bol', 'BolC5t29150H' => 'bol', 'BolC5t29932H' => 'bol', 'BolC5t29933H' => 'bol', 'BolC5t29947H' => 'bol', 'BolC5t30244H' => 'bol', 'BolC5t30354H' => 'bol', 'BolC5t30858H' => 'bol', 'BolC5t31042H' => 'bol', 'BolC5t31239H' => 'bol', 'BolC5t32588H' => 'bol', 'BolC5t32918H' => 'bol', 'BolC5t33152H' => 'bol', 'BolC5t33627H' => 'bol', 'BolC5t33843H' => 'bol', 'BolC5t33856H' => 'bol', 'BolC5t34092H' => 'bol', 'BolC5t34840H' => 'bol', 'BolC6t35224H' => 'bol', 'BolC6t35225H' => 'bol', 'BolC6t35269H' => 'bol', 'BolC6t35334H' => 'bol', 'BolC6t35354H' => 'bol', 'BolC6t35370H' => 'bol', 'BolC6t35388H' => 'bol', 'BolC6t35566H' => 'bol', 'BolC6t35885H' => 'bol', 'BolC6t35926H' => 'bol', 'BolC6t36113H' => 'bol', 'BolC6t36504H' => 'bol', 'BolC6t36543H' => 'bol', 'BolC6t37073H' => 'bol', 'BolC6t38044H' => 'bol', 'BolC6t38608H' => 'bol', 'BolC6t38739H' => 'bol', 'BolC6t38835H' => 'bol', 'BolC6t38967H' => 'bol', 'BolC6t39252H' => 'bol', 'BolC6t39317H' => 'bol', 'BolC6t39318H' => 'bol', 'BolC6t39320H' => 'bol', 'BolC7t40586H' => 'bol', 'BolC7t40707H' => 'bol', 'BolC7t40747H' => 'bol', 'BolC7t41416H' => 'bol', 'BolC7t42027H' => 'bol', 'BolC7t42556H' => 'bol', 'BolC7t42937H' => 'bol', 'BolC7t43208H' => 'bol', 'BolC7t43489H' => 'bol', 'BolC7t44271H' => 'bol', 'BolC7t44282H' => 'bol', 'BolC7t44476H' => 'bol', 'BolC7t44839H' => 'bol', 'BolC7t45220H' => 'bol', 'BolC7t45796H' => 'bol', 'BolC7t46240H' => 'bol', 'BolC8t47511H' => 'bol', 'BolC8t47551H' => 'bol', 'BolC8t47569H' => 'bol', 'BolC8t48117H' => 'bol', 'BolC8t48552H' => 'bol', 'BolC8t48797H' => 'bol', 'BolC8t49091H' => 'bol', 'BolC8t49338H' => 'bol', 'BolC8t49423H' => 'bol', 'BolC8t49469H' => 'bol', 'BolC8t49666H' => 'bol', 'BolC8t49699H' => 'bol', 'BolC8t49935H' => 'bol', 'BolC8t49936H' => 'bol', 'BolC8t50916H' => 'bol', 'BolC8t51140H' => 'bol', 'BolC8t51239H' => 'bol', 'BolC8t51260H' => 'bol', 'BolC8t51300H' => 'bol', 'BolC8t52815H' => 'bol', 'BolC9t53309H' => 'bol', 'BolC9t53787H' => 'bol', 'BolC9t54035H' => 'bol', 'BolC9t54410H' => 'bol', 'BolC9t54624H' => 'bol', 'BolC9t54713H' => 'bol', 'BolC9t54914H' => 'bol', 'BolC9t55688H' => 'bol', 'BolC9t55949H' => 'bol', 'BolC9t56169H' => 'bol', 'BolC9t56299H' => 'bol', 'BolC9t56437H' => 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'BraA04t17766Z' => 'bra', 'BraA04t18603Z' => 'bra', 'BraA05t22331Z' => 'bra', 'BraA05t23088Z' => 'bra', 'BraA06t24059Z' => 'bra', 'BraA06t25448Z' => 'bra', 'BraA06t27060Z' => 'bra', 'BraA07t28081Z' => 'bra', 'BraA07t28139Z' => 'bra', 'BraA07t28335Z' => 'bra', 'BraA07t28401Z' => 'bra', 'BraA07t28464Z' => 'bra', 'BraA07t28829Z' => 'bra', 'BraA07t29087Z' => 'bra', 'BraA07t29530Z' => 'bra', 'BraA07t30121Z' => 'bra', 'BraA07t30152Z' => 'bra', 'BraA07t31098Z' => 'bra', 'BraA08t32647Z' => 'bra', 'BraA08t32778Z' => 'bra', 'BraA08t33225Z' => 'bra', 'BraA08t33512Z' => 'bra', 'BraA08t34149Z' => 'bra', 'BraA08t34229Z' => 'bra', 'BraA08t35548Z' => 'bra', 'BraA09t36188Z' => 'bra', 'BraA09t36287Z' => 'bra', 'BraA09t37089Z' => 'bra', 'BraA09t37618Z' => 'bra', 'BraA09t37983Z' => 'bra', 'BraA09t37984Z' => 'bra', 'BraA09t38022Z' => 'bra', 'BraA09t38868Z' => 'bra', 'BraA09t39079Z' => 'bra', 'BraA09t39631Z' => 'bra', 'BraA09t41396Z' => 'bra', 'BraA09t42252Z' => 'bra', 'BraA10t42534Z' => 'bra', 'BraA10t42970Z' => 'bra', 'BraA10t42971Z' => 'bra', 'BraA10t43119Z' => 'bra', 'BraA10t43182Z' => 'bra', 'BraA10t43586Z' => 'bra', 'BraA10t43772Z' => 'bra', 'BraA10t43824Z' => 'bra', 'BraSC39t46220Z' => 'bra', 'C01p18870' => 'bna', 'C01p27290' => 'bna', 'C01p30110' => 'bna', 'C01p34040' => 'bna', 'C02p15670' => 'bna', 'C02p30330' => 'bna', 'C02p34640' => 'bna', 'C02p49620' => 'bna', 'C02p54670' => 'bna', 'C02p57570' => 'bna', 'C03p13660' => 'bna', 'C03p29680' => 'bna', 'C03p34180' => 'bna', 'C03p35560' => 'bna', 'C03p39150' => 'bna', 'C03p48310' => 'bna', 'C03p51240' => 'bna', 'C03p52090' => 'bna', 'C03p52110' => 'bna', 'C03p67910' => 'bna', 'C03p75170' => 'bna', 'C03p87880' => 'bna', 'C04p52070' => 'bna', 'C05p08130' => 'bna', 'C05p11830' => 'bna', 'C05p19460' => 'bna', 'C06p00890' => 'bna', 'C06p07680' => 'bna', 'C06p08080' => 'bna', 'C06p09750' => 'bna', 'C06p10370' => 'bna', 'C06p10980' => 'bna', 'C06p13710' => 'bna', 'C06p18600' => 'bna', 'C06p32260' => 'bna', 'C07p03520' => 'bna', 'C07p04310' => 'bna', 'C07p05040' => 'bna', 'C07p05770' => 'bna', 'C07p20360' => 'bna', 'C07p26790' => 'bna', 'C07p36130' => 'bna', 'C07p50800' => 'bna', 'C08p07070' => 'bna', 'C08p07270' => 'bna', 'C08p10480' => 'bna', 'C08p14340' => 'bna', 'C08p48040' => 'bna', 'C09p42620' => 'bna', 'C09p49690' => 'bna', 'C09p58650' => 'bna', 'CARHR017910' => 'chi', 'CARHR034120' => 'chi', 'CARHR034640' => 'chi', 'CARHR055780' => 'chi', 'CARHR056400' => 'chi', 'CARHR056420' => 'chi', 'CARHR059740' => 'chi', 'CARHR077050' => 'chi', 'CARHR106500' => 'chi', 'CARHR113380' => 'chi', 'CARHR114650' => 'chi', 'CARHR145720' => 'chi', 'CARHR153540' => 'chi', 'CARHR154060' => 'chi', 'CARHR160220' => 'chi', 'CARHR181520' => 'chi', 'CARHR217600' => 'chi', 'Sp1g01750' => 'spa', 'Sp4g05790' => 'spa', 'Sp7g01630' => 'spa', 'SpUn0004_0050' => 'spa', 'Thhalv10000453m.g' => 'esa', 'Thhalv10000609m.g' => 'esa', 'Thhalv10000670m.g' => 'esa', 'Thhalv10001854m.g' => 'esa', 'Thhalv10002209m.g' => 'esa', 'Thhalv10002231m.g' => 'esa', 'Thhalv10002326m.g' => 'esa', 'Thhalv10002331m.g' => 'esa', 'Thhalv10002835m.g' => 'esa', 'Thhalv10003490m.g' => 'esa', 'Thhalv10003494m.g' => 'esa', 'Thhalv10005465m.g' => 'esa', 'Thhalv10011015m.g' => 'esa', 'Thhalv10011157m.g' => 'esa', 'Thhalv10017605m.g' => 'esa', 'Thhalv10019636m.g' => 'esa', 'Thhalv10019721m.g' => 'esa', 'Thhalv10023022m.g' => 'esa', 'Thhalv10023819m.g' => 'esa', 'Thhalv10023927m.g' => 'esa', 'Thhalv10023960m.g' => 'esa', 'Thhalv10024129m.g' => 'esa', 'Thhalv10027466m.g' => 'esa', 'Thhalv10028180m.g' => 'esa', 'Thhalv10029165m.g' => 'esa', 'Thhalv10029405m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001239' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001239' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001239' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001239' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151