Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38742H Brassica oleracea HOM05D000017 ORTHO05D009679 3.7e-87 324.7 151 100.0
AL7G47630 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 2.7e-37 159.1 134 61.9
AL8G22950 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 1.3e-36 156.8 150 55.3
BolC4t26471H Brassica oleracea HOM05D000017 ORTHO05D000013 3.9e-36 155.2 134 57.5
AL7G47070 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 1.3e-34 150.2 122 58.2
AL7G47640 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 1.6e-34 149.8 124 59.7
BraA09t37132Z Brassica rapa HOM05D000017 ORTHO05D000013 2.1e-21 106.3 123 46.3
BolC9t54695H Brassica oleracea HOM05D000017 ORTHO05D000013 4.7e-21 105.1 124 46.0
BraA06t23535Z Brassica rapa HOM05D000017 ORTHO05D000013 4.7e-21 105.1 123 43.9
BolC6t35644H Brassica oleracea HOM05D000017 ORTHO05D000013 3.0e-20 102.4 123 43.1
AT1G64255 Arabidopsis thaliana HOM05D000017 ORTHO05D000013 3.3e-19 99.0 125 45.6
AL2G10720 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 4.4e-19 98.6 103 49.5
AL2G10700 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 1.3e-18 97.1 123 43.9
BolC5t34106H Brassica oleracea HOM05D000033 ORTHO05D019988 3.7e-18 95.5 123 42.3
AT1G64253 Arabidopsis thaliana HOM05D000017 ORTHO05D000013 9.1e-17 90.9 124 39.5
A09p14860 Brassica napus HOM05D000017 ORTHO05D000013 9.1e-17 90.9 132 39.4
AL2G10710 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 2.6e-16 89.4 126 41.3
AT1G49920 Arabidopsis thaliana HOM05D000017 ORTHO05D000013 3.5e-16 89.0 136 39.0
C07p04860 Brassica napus HOM05D000017 ORTHO05D000013 7.7e-16 87.8 136 39.0
BolC7t40885H Brassica oleracea HOM05D000017 ORTHO05D000013 7.7e-16 87.8 136 39.0
C07p04840 Brassica napus HOM05D000017 ORTHO05D000013 5.0e-15 85.1 141 36.9
BolC7t40882H Brassica oleracea HOM05D000017 ORTHO05D000013 6.5e-15 84.7 141 36.9
Thhalv10024064m.g Eutrema salsugineum HOM05D000017 ORTHO05D000013 6.5e-15 84.7 120 41.7
AL1G57470 Arabidopsis lyrata HOM05D000017 ORTHO05D000013 3.2e-14 82.4 132 37.1
AT1G64260 Arabidopsis thaliana HOM05D000017 ORTHO05D000013 9.4e-14 80.9 123 35.8
C09p17990 Brassica napus HOM05D000017 ORTHO05D000013 1.2e-13 80.5 128 36.7
C02p13640 Brassica napus HOM05D025095 ORTHO05D000013 1.3e-10 70.5 73 47.9
ClCG06G006800 Citrullus lanatus HOM05D000176 ORTHO05D000013 6.3e-10 68.2 121 28.1
Atru.chr5.879 Acer truncatum HOM05D000017 ORTHO05D000013 1.8e-09 66.6 96 36.5
Aqoxy2G02481 Aquilegia oxysepala HOM05D000017 ORTHO05D000013 2.4e-09 66.2 115 29.6
QL10p055041 Quercus lobata HOM05D000017 ORTHO05D009679 2.4e-09 66.2 129 31.8
Rhsim03G0174600 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.4e-09 66.2 98 31.6
Aqoxy5G02295 Aquilegia oxysepala HOM05D009857 ORTHO05D013444 3.1e-09 65.9 91 33.0
Hma1.2p1_0257F.1_g103550 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 5.3e-09 65.1 116 31.9
Lj6g0013797 Lotus japonicus HOM05D000017 ORTHO05D000013 1.2e-08 63.9 78 33.3
Lj6g0025034 Lotus japonicus HOM05D000017 ORTHO05D000013 1.2e-08 63.9 78 33.3
MELO3C033201.2 Cucumis melo HOM05D000017 ORTHO05D000013 1.6e-08 63.5 100 33.0
QL08p005699 Quercus lobata HOM05D000017 ORTHO05D007253 2.0e-08 63.2 87 34.5
QL08p006036 Quercus lobata HOM05D000017 ORTHO05D007253 2.0e-08 63.2 87 34.5
QL08p013497 Quercus lobata HOM05D000017 ORTHO05D007253 2.0e-08 63.2 87 34.5
ECA240G1974 Erigeron canadensis HOM05D049004 ORTHO05D009679 3.5e-08 62.4 72 33.3
PSO339G1227 Papaver somniferum HOM05D000017 ORTHO05D000013 3.5e-08 62.4 100 32.0
MELO3C032008.2 Cucumis melo HOM05D008649 ORTHO05D009980 4.5e-08 62.0 82 37.8
QL02p062658 Quercus lobata HOM05D000017 ORTHO05D009679 4.5e-08 62.0 80 40.0
CANSAT11G0754 Cannabis sativa HOM05D000017 ORTHO05D000013 5.9e-08 61.6 90 34.4
TWI09G1270 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 5.9e-08 61.6 95 33.7
TWI36G0598 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 5.9e-08 61.6 95 33.7
PSO063G0622 Papaver somniferum HOM05D000017 ORTHO05D000013 7.7e-08 61.2 89 27.0
Ciclev10023995m.g Citrus clementina HOM05D000017 ORTHO05D000013 1.0e-07 60.8 89 33.7
TPR.G14615 Trifolium pratense HOM05D013451 ORTHO05D009679 1.0e-07 60.8 127 27.6
EL10Ac6g14585 Beta vulgaris HOM05D000017 ORTHO05D007253 1.3e-07 60.5 54 40.7
TWI53G1859 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.7e-07 60.1 93 33.3
Cc00_g20850 Coffea canephora HOM05D000176 ORTHO05D000106 2.2e-07 59.7 75 38.7
MELO3C000645.2 Cucumis melo HOM05D000017 ORTHO05D000013 2.2e-07 59.7 90 33.3
TPR.G40010 Trifolium pratense HOM05D013451 ORTHO05D009679 2.2e-07 59.7 104 33.7
Ah.13g072940 Amaranthus hybridus HOM05D000017 ORTHO05D007253 2.9e-07 59.3 90 34.4
CSS0015681 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 3.8e-07 58.9 94 35.1
Dinv10862 Davidia involucrata HOM05D008341 ORTHO05D009679 5.0e-07 58.5 59 39.0
Aqoxy2G02468 Aquilegia oxysepala HOM05D000017 ORTHO05D000013 6.5e-07 58.2 115 28.7
CSS0000290 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 6.5e-07 58.2 71 39.4
Dinv20123 Davidia involucrata HOM05D008341 ORTHO05D009679 6.5e-07 58.2 102 30.4
Dinv26341 Davidia involucrata HOM05D008341 ORTHO05D009679 6.5e-07 58.2 102 30.4
Dinv30085 Davidia involucrata HOM05D007975 ORTHO05D010011 6.5e-07 58.2 109 32.1
RcHm_v2.0_Chr7g0230091 Rosa chinensis HOM05D000017 ORTHO05D000013 6.5e-07 58.2 83 33.7
TWI18G0813 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 6.5e-07 58.2 69 36.2
Atru.chr8.859 Acer truncatum HOM05D000017 ORTHO05D000013 8.5e-07 57.8 84 35.7
Nn3g21926 Nelumbo nucifera HOM05D000017 ORTHO05D000013 8.5e-07 57.8 111 33.3
Dinv09463 Davidia involucrata HOM05D007975 ORTHO05D010011 1.1e-06 57.4 74 33.8
Dinv20712 Davidia involucrata HOM05D008341 ORTHO05D009679 1.1e-06 57.4 59 39.0
Dinv21995 Davidia involucrata HOM05D008341 ORTHO05D009679 1.1e-06 57.4 68 36.8
Dinv30104 Davidia involucrata HOM05D008341 ORTHO05D009679 1.1e-06 57.4 68 36.8
Sopen07g021550 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-06 57.4 86 32.6
ECA234G1252 Erigeron canadensis HOM05D000017 ORTHO05D009679 1.5e-06 57.0 72 30.6
Manes.06G036167 Manihot esculenta HOM05D008341 ORTHO05D009679 1.5e-06 57.0 73 34.2
Nitab4.5_0002352g0130 Nicotiana tabacum HOM05D000017 ORTHO05D000013 1.5e-06 57.0 69 36.2
Ah.02g115090 Amaranthus hybridus HOM05D000017 ORTHO05D000013 1.9e-06 56.6 121 26.4
CSS0007859 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.9e-06 56.6 60 40.0
CSS0048468 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 1.9e-06 56.6 60 41.7
TWI14G1428 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.9e-06 56.6 93 34.4
TWI53G0734 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.9e-06 56.6 93 34.4
CSS0024078 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 2.5e-06 56.2 60 40.0
CSS0026252 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.5e-06 56.2 60 40.0
CSS0031758 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 2.5e-06 56.2 60 40.0
Ciclev10006748m.g Citrus clementina HOM05D000017 ORTHO05D000013 2.5e-06 56.2 88 31.8
VMungo1080G0784 Vigna mungo HOM05D013451 ORTHO05D009679 2.5e-06 56.2 89 32.6
Dinv23694 Davidia involucrata HOM05D000017 ORTHO05D009679 3.2e-06 55.8 59 39.0
PSO832G0482 Papaver somniferum HOM05D000017 ORTHO05D000013 3.2e-06 55.8 84 35.7
PGR044G2516 Punica granatum HOM05D000017 ORTHO05D000013 3.2e-06 55.8 95 34.7
Sabra02G0130100 Salix brachista HOM05D000017 ORTHO05D000013 3.2e-06 55.8 71 36.6
Sed0019710 Sechium edule HOM05D012603 ORTHO05D015630 3.2e-06 55.8 126 27.8
Sopen11g020500 Solanum pennellii HOM05D000017 ORTHO05D000013 3.2e-06 55.8 86 32.6
TWI09G0713 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.2e-06 55.8 60 43.3
TWI31G0342 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.2e-06 55.8 60 43.3
TWI75G0784 Tripterygium wilfordii HOM05D000017 ORTHO05D007253 3.2e-06 55.8 60 43.3
TWI75G0917 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.2e-06 55.8 60 43.3
Atru.chr2.1485 Acer truncatum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 104 30.8
Atru.chr6.42 Acer truncatum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 111 32.4
CSS0006340 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.2e-06 55.5 60 40.0
Dinv06620 Davidia involucrata HOM05D008341 ORTHO05D009679 4.2e-06 55.5 59 35.6
ECA247G1501 Erigeron canadensis HOM05D000017 ORTHO05D009679 4.2e-06 55.5 76 35.5
PSO013G0012 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO013G0076 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO013G0096 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO063G4909 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO063G5239 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO210G0854 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO210G1360 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 100 34.0
PSO339G0767 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO339G2448 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO339G6349 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO339G6423 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO384G1356 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO478G0481 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 102 26.5
PSO478G1433 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO528G0220 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO541G6328 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO761G0585 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 100 34.0
PSO782G2549 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO782G4552 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO832G1501 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
PSO832G2155 Papaver somniferum HOM05D000017 ORTHO05D000013 4.2e-06 55.5 84 35.7
Sabra14G0083900 Salix brachista HOM05D000017 ORTHO05D000013 4.2e-06 55.5 81 39.5
Sopen02g010180 Solanum pennellii HOM05D000017 ORTHO05D009909 4.2e-06 55.5 97 30.9
Atru.chr10.1873 Acer truncatum HOM05D000017 ORTHO05D000013 5.5e-06 55.1 95 30.5
Atru.chr3.3437 Acer truncatum HOM05D000017 ORTHO05D000013 5.5e-06 55.1 111 31.5
Actinidia00337 Actinidia chinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 100 31.0
arahy.Tifrunner.gnm1.ann1.31P59F Arachis hypogaea HOM05D000017 ORTHO05D000013 5.5e-06 55.1 123 28.5
C02p27370 Brassica napus HOM05D038929 ORTHO05D031987 5.5e-06 55.1 75 41.3
CSS0001578 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 60 40.0
CSS0007981 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 60 40.0
CSS0008184 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 60 40.0
CSS0014296 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 60 40.0
CSS0015352 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 60 40.0
CSS0042409 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.5e-06 55.1 60 40.0
Dinv23640 Davidia involucrata HOM05D008341 ORTHO05D009679 5.5e-06 55.1 59 37.3
PSO832G4583 Papaver somniferum HOM05D000017 ORTHO05D000013 5.5e-06 55.1 84 35.7
Sopen00g010330 Solanum pennellii HOM05D000017 ORTHO05D000013 5.5e-06 55.1 106 29.2
CSS0024128 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 7.2e-06 54.7 70 38.6
CSS0025680 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 7.2e-06 54.7 60 38.3
CANSAT78G0789 Cannabis sativa HOM05D000017 ORTHO05D000013 7.2e-06 54.7 60 36.7
Nitab4.5_0001180g0200 Nicotiana tabacum HOM05D000017 ORTHO05D000308 7.2e-06 54.7 118 27.1
PGR042G0757 Punica granatum HOM05D000017 ORTHO05D000013 7.2e-06 54.7 95 33.7
Rhsim11G0147200 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.2e-06 54.7 103 29.1
THA.LOC104807873 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 7.2e-06 54.7 105 26.7
CSS0010991 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 9.4e-06 54.3 109 30.3
Dinv16753 Davidia involucrata HOM05D008341 ORTHO05D009679 9.4e-06 54.3 59 35.6
Dinv40927 Davidia involucrata HOM05D008341 ORTHO05D009679 9.4e-06 54.3 59 39.0
ECA246G1601 Erigeron canadensis HOM05D000017 ORTHO05D000013 9.4e-06 54.3 59 35.6
PGR004G0052 Punica granatum HOM05D000017 ORTHO05D000013 9.4e-06 54.3 79 35.4
PGR142G4382 Punica granatum HOM05D000017 ORTHO05D000013 9.4e-06 54.3 95 33.7
SHI45280 Sapria himalayana HOM05D000017 ORTHO05D000013 9.4e-06 54.3 86 29.1
Sopen10g022230 Solanum pennellii HOM05D000017 ORTHO05D000013 9.4e-06 54.3 86 32.6
TWI36G0864 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 9.4e-06 54.3 60 41.7


User provided reference genes

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