Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 1.1e-93 346.7 177 100.0
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 2.4e-77 292.4 179 86.0
C06p35280 Brassica napus HOM05D003893 ORTHO05D021800 4.4e-63 245.0 136 90.4
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 7.3e-58 227.6 142 85.2
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 8.3e-54 214.2 182 66.5
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 8.3e-54 214.2 138 81.9
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 4.7e-49 198.4 182 62.1
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 3.1e-48 195.7 182 62.1
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 6.8e-48 194.5 182 60.4
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.0e-47 193.0 182 60.4
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 4.4e-47 191.8 182 61.0
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 4.4e-47 191.8 182 60.4
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.4e-45 186.8 182 61.0
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 1.9e-45 186.4 141 72.3
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 4.2e-45 185.3 182 62.1
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 4.2e-45 185.3 182 62.1
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 5.4e-45 184.9 182 60.4
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 4.6e-44 181.8 182 61.5
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.1e-42 177.2 182 57.7
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 6.2e-41 171.4 120 76.7
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 5.8e-23 111.7 182 42.9
BcaC02g11244 Brassica carinata HOM05D003893 ORTHO05D094965 5.1e-19 98.6 49 100.0
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.9e-16 88.2 133 39.8
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 6.9e-16 88.2 184 35.3
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 2.0e-15 86.7 186 33.3
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 3.4e-15 85.9 186 34.4
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.7e-14 83.6 189 33.9
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.0e-14 82.0 191 33.5
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 6.5e-14 81.6 190 34.2
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 1.4e-13 80.5 196 33.7
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 3.2e-13 79.3 167 36.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 6.1e-12 75.1 178 34.3
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 2.3e-11 73.2 164 32.9
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 5.1e-11 72.0 127 37.0
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.1e-10 70.9 190 31.6
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 1.1e-10 70.9 206 28.2
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.3e-10 69.3 160 32.5
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 7.4e-10 68.2 142 33.1
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 9.7e-10 67.8 208 28.8
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.6e-09 67.0 161 31.7
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 4.8e-09 65.5 196 26.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 8.2e-09 64.7 185 31.4
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.8e-08 63.5 188 29.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 1.8e-08 63.5 152 30.9
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 1.8e-08 63.5 192 25.0
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 1.8e-08 63.5 197 28.4
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 4.1e-08 62.4 197 27.9
A09p23880 Brassica napus HOM05D003893 ORTHO05D005167 5.3e-08 62.0 50 62.0
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 5.3e-08 62.0 182 30.2
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 5.3e-08 62.0 184 30.4
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 2.0e-07 60.1 163 29.4
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.0e-07 60.1 115 36.5
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 2.0e-07 60.1 176 29.5
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 2.0e-07 60.1 189 27.5
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 2.6e-07 59.7 157 27.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 2.6e-07 59.7 191 30.4
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.6e-07 59.7 191 30.4
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 7.7e-07 58.2 161 24.8
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 1.7e-06 57.0 157 30.6
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 2.9e-06 56.2 183 27.3
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.9e-06 56.2 191 27.7


User provided reference genes

Program Settings