Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 2.0e-68 262.3 133 100.0
C06p34150 Brassica napus HOM05D003431 ORTHO05D014368 3.2e-42 175.3 106 89.6
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 1.7e-27 126.3 87 75.9
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 3.8e-27 125.2 87 74.7
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 3.8e-27 125.2 87 75.9
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 3.8e-27 125.2 87 75.9
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 5.0e-27 124.8 87 74.7
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 5.0e-27 124.8 87 74.7
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 5.0e-27 124.8 87 74.7
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 5.0e-27 124.8 87 74.7
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 5.0e-27 124.8 87 74.7
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 5.0e-27 124.8 87 74.7
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 1.1e-26 123.6 87 73.6
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 1.5e-26 123.2 87 73.6
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 1.9e-26 122.9 87 72.4
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 1.9e-26 122.9 87 72.4
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 1.9e-26 122.9 87 72.4
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.9e-26 122.9 87 72.4
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 2.5e-26 122.5 87 73.6
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 4.2e-26 121.7 87 72.4
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 1.6e-25 119.8 87 71.3
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 2.7e-25 119.0 95 69.5
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 6.1e-25 117.9 87 71.3
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 6.1e-25 117.9 86 70.9
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 8.0e-25 117.5 62 96.8
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 1.0e-24 117.1 86 69.8
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 1.0e-24 117.1 87 70.1
BcaB08g35512 Brassica carinata HOM05D003431 ORTHO05D014368 5.2e-24 114.8 63 87.3
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 3.7e-22 108.6 101 62.4
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 3.7e-22 108.6 87 64.4
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 4.8e-22 108.2 87 63.2
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 4.8e-22 108.2 87 62.1
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 8.3e-22 107.5 87 64.4
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 1.1e-21 107.1 87 64.4
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 1.4e-21 106.7 87 64.4
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 2.4e-21 105.9 87 60.9
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 4.1e-21 105.1 87 60.9
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 4.1e-21 105.1 87 59.8
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 7.0e-21 104.4 87 62.1
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 7.0e-21 104.4 87 63.2
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 9.1e-21 104.0 87 60.9
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 9.1e-21 104.0 87 63.2
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 1.2e-20 103.6 87 59.8
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 2.0e-20 102.8 87 62.1
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 2.7e-20 102.4 87 58.6
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 3.5e-20 102.1 86 60.5
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 3.5e-20 102.1 87 62.1
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 3.5e-20 102.1 87 59.8
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 3.5e-20 102.1 87 60.9
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 3.5e-20 102.1 87 59.8
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 4.5e-20 101.7 87 60.9
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 4.5e-20 101.7 87 58.6
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 4.5e-20 101.7 87 58.6
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.5e-20 101.7 87 60.9
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 5.9e-20 101.3 87 58.6
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 7.7e-20 100.9 87 62.1
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 7.7e-20 100.9 87 56.3
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 7.7e-20 100.9 87 59.8
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 7.7e-20 100.9 87 58.6
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 1.0e-19 100.5 60 80.0
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 1.0e-19 100.5 87 58.6
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 1.3e-19 100.1 98 63.3
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.3e-19 100.1 87 57.5
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.3e-19 100.1 87 57.5
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 1.3e-19 100.1 87 60.9
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 1.3e-19 100.1 87 59.8
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 1.3e-19 100.1 87 59.8
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 1.3e-19 100.1 86 59.3
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 1.3e-19 100.1 86 59.3
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 1.7e-19 99.8 87 57.5
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.7e-19 99.8 87 60.9
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.7e-19 99.8 87 60.9
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.7e-19 99.8 87 60.9
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.7e-19 99.8 87 59.8
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 2.3e-19 99.4 87 58.6
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 2.3e-19 99.4 87 57.5
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 2.9e-19 99.0 87 57.5
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 5.0e-19 98.2 87 57.5
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 5.0e-19 98.2 87 57.5
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 56.3
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 57.5
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 55.2
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 55.2
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 55.2
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 56.3
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 58.6
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 56.3
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 6.6e-19 97.8 87 58.6
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 8.6e-19 97.4 87 56.3
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 8.6e-19 97.4 87 57.5
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 8.6e-19 97.4 87 57.5
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 8.6e-19 97.4 87 56.3
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 1.1e-18 97.1 86 59.3
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 1.1e-18 97.1 87 57.5
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 1.1e-18 97.1 87 56.3
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 1.1e-18 97.1 87 58.6
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 1.5e-18 96.7 87 55.2
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 1.5e-18 96.7 87 57.5
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.5e-18 96.7 84 58.3
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 1.5e-18 96.7 87 56.3
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 1.9e-18 96.3 87 56.3
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-18 96.3 87 56.3
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 1.9e-18 96.3 87 57.5
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 1.9e-18 96.3 87 55.2
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 3.3e-18 95.5 87 54.0
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 3.3e-18 95.5 87 56.3
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 4.2e-18 95.1 87 55.2
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-18 95.1 87 55.2
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-18 95.1 87 55.2
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-18 95.1 87 55.2
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 5.5e-18 94.7 87 56.3
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 5.5e-18 94.7 87 55.2
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 5.5e-18 94.7 87 55.2
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 7.2e-18 94.4 87 55.2
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 9.5e-18 94.0 87 51.7
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 1.2e-17 93.6 87 54.0
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 1.2e-17 93.6 87 55.2
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 1.2e-17 93.6 87 54.0
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 1.6e-17 93.2 87 52.9
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 1.6e-17 93.2 86 53.5
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.1e-17 92.8 87 54.0
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 3.6e-17 92.0 87 54.0
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 3.6e-17 92.0 86 55.8
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 4.7e-17 91.7 87 54.0
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 1.0e-16 90.5 87 50.6
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 1.0e-16 90.5 87 50.6
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 1.4e-16 90.1 87 51.7
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 1.4e-16 90.1 86 52.3
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 1.8e-16 89.7 92 56.5
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 2.3e-16 89.4 86 51.2
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 3.0e-16 89.0 99 56.6
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 3.0e-16 89.0 87 54.0
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 3.0e-16 89.0 87 56.3
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 3.0e-16 89.0 87 52.9
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 4.0e-16 88.6 87 50.6
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 4.0e-16 88.6 87 52.9
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 4.0e-16 88.6 86 54.7
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 6.8e-16 87.8 86 52.3
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 1.2e-15 87.0 87 51.7
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.2e-15 87.0 87 51.7
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 1.2e-15 87.0 86 51.2
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.5e-15 86.7 87 51.7
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 3.4e-15 85.5 87 49.4
BolC5t28997H Brassica oleracea HOM05D003431 ORTHO05D014368 2.8e-14 82.4 96 56.2
CARHR057180 Cardamine hirsuta HOM05D003431 ORTHO05D014368 8.3e-14 80.9 63 73.0
Zm00001eb078820 Zea mays HOM05D003431 ORTHO05D005152 1.1e-13 80.5 84 47.6
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.8e-13 79.7 87 47.1
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.2e-12 77.0 87 46.0
BraA04t16596Z Brassica rapa HOM05D003431 ORTHO05D014368 7.8e-12 74.3 42 88.1
Zm00001eb026620 Zea mays HOM05D003431 ORTHO05D005152 2.9e-11 72.4 67 52.2
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 1.1e-10 70.5 132 34.8
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 3.3e-10 68.9 54 68.5
BcaB06g27242 Brassica carinata HOM05D005064 ORTHO05D006611 2.8e-09 65.9 88 44.3
SEGI_29948 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 4.7e-09 65.1 64 48.4
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 1.4e-08 63.5 64 48.4
ATR0085G001 Amborella trichopoda HOM05D003431 ORTHO05D014368 1.8e-08 63.2 64 45.3
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 5.2e-08 61.6 87 43.7
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 4.4e-07 58.5 46 67.4
A02p18670 Brassica napus HOM05D003431 ORTHO05D101668 4.4e-07 58.5 57 63.2
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 4.4e-07 58.5 46 67.4
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 7.5e-07 57.8 45 68.9
BcaB04g18067 Brassica carinata HOM05D003431 ORTHO05D032197 9.8e-07 57.4 111 41.4
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 9.8e-07 57.4 43 72.1
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 1.3e-06 57.0 87 40.2
TAR636G2181 Trochodendron aralioides HOM05D003431 ORTHO05D005152 3.7e-06 55.5 42 64.3


User provided reference genes

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